GO Enrichment Analysis of Co-expressed Genes with
AT2G46250
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 2 | GO:0042493: response to drug | 0.00E+00 |
| 3 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 4 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 5 | GO:0015979: photosynthesis | 3.66E-08 |
| 6 | GO:0009765: photosynthesis, light harvesting | 4.77E-06 |
| 7 | GO:0042549: photosystem II stabilization | 1.23E-05 |
| 8 | GO:0010205: photoinhibition | 6.19E-05 |
| 9 | GO:0043953: protein transport by the Tat complex | 6.91E-05 |
| 10 | GO:0000476: maturation of 4.5S rRNA | 6.91E-05 |
| 11 | GO:0000967: rRNA 5'-end processing | 6.91E-05 |
| 12 | GO:1904966: positive regulation of vitamin E biosynthetic process | 6.91E-05 |
| 13 | GO:0000481: maturation of 5S rRNA | 6.91E-05 |
| 14 | GO:1904964: positive regulation of phytol biosynthetic process | 6.91E-05 |
| 15 | GO:0042371: vitamin K biosynthetic process | 6.91E-05 |
| 16 | GO:0065002: intracellular protein transmembrane transport | 6.91E-05 |
| 17 | GO:0043007: maintenance of rDNA | 6.91E-05 |
| 18 | GO:0034337: RNA folding | 6.91E-05 |
| 19 | GO:0006419: alanyl-tRNA aminoacylation | 6.91E-05 |
| 20 | GO:0019684: photosynthesis, light reaction | 8.80E-05 |
| 21 | GO:0035304: regulation of protein dephosphorylation | 1.66E-04 |
| 22 | GO:0080181: lateral root branching | 1.66E-04 |
| 23 | GO:0034470: ncRNA processing | 1.66E-04 |
| 24 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.66E-04 |
| 25 | GO:0071398: cellular response to fatty acid | 2.81E-04 |
| 26 | GO:0005977: glycogen metabolic process | 2.81E-04 |
| 27 | GO:0009650: UV protection | 4.06E-04 |
| 28 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 4.06E-04 |
| 29 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 4.06E-04 |
| 30 | GO:0010021: amylopectin biosynthetic process | 5.42E-04 |
| 31 | GO:0006564: L-serine biosynthetic process | 6.87E-04 |
| 32 | GO:0010236: plastoquinone biosynthetic process | 6.87E-04 |
| 33 | GO:0015995: chlorophyll biosynthetic process | 8.10E-04 |
| 34 | GO:0018298: protein-chromophore linkage | 8.92E-04 |
| 35 | GO:1901259: chloroplast rRNA processing | 9.99E-04 |
| 36 | GO:0042372: phylloquinone biosynthetic process | 9.99E-04 |
| 37 | GO:0009769: photosynthesis, light harvesting in photosystem II | 1.17E-03 |
| 38 | GO:0009645: response to low light intensity stimulus | 1.17E-03 |
| 39 | GO:0006400: tRNA modification | 1.17E-03 |
| 40 | GO:0009772: photosynthetic electron transport in photosystem II | 1.17E-03 |
| 41 | GO:0032508: DNA duplex unwinding | 1.34E-03 |
| 42 | GO:0016559: peroxisome fission | 1.34E-03 |
| 43 | GO:0017004: cytochrome complex assembly | 1.53E-03 |
| 44 | GO:0009089: lysine biosynthetic process via diaminopimelate | 2.36E-03 |
| 45 | GO:1903507: negative regulation of nucleic acid-templated transcription | 2.36E-03 |
| 46 | GO:0009773: photosynthetic electron transport in photosystem I | 2.36E-03 |
| 47 | GO:0005983: starch catabolic process | 2.58E-03 |
| 48 | GO:0010628: positive regulation of gene expression | 2.82E-03 |
| 49 | GO:0010020: chloroplast fission | 3.06E-03 |
| 50 | GO:0010207: photosystem II assembly | 3.06E-03 |
| 51 | GO:0010030: positive regulation of seed germination | 3.30E-03 |
| 52 | GO:0009768: photosynthesis, light harvesting in photosystem I | 4.08E-03 |
| 53 | GO:0005975: carbohydrate metabolic process | 4.13E-03 |
| 54 | GO:0048511: rhythmic process | 4.35E-03 |
| 55 | GO:0009269: response to desiccation | 4.35E-03 |
| 56 | GO:0048278: vesicle docking | 4.35E-03 |
| 57 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 4.63E-03 |
| 58 | GO:0009411: response to UV | 4.91E-03 |
| 59 | GO:0071369: cellular response to ethylene stimulus | 4.91E-03 |
| 60 | GO:0009693: ethylene biosynthetic process | 4.91E-03 |
| 61 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 5.50E-03 |
| 62 | GO:0042631: cellular response to water deprivation | 5.80E-03 |
| 63 | GO:0006520: cellular amino acid metabolic process | 6.11E-03 |
| 64 | GO:0061025: membrane fusion | 6.42E-03 |
| 65 | GO:0006814: sodium ion transport | 6.42E-03 |
| 66 | GO:0042752: regulation of circadian rhythm | 6.42E-03 |
| 67 | GO:0019252: starch biosynthetic process | 6.74E-03 |
| 68 | GO:0071554: cell wall organization or biogenesis | 7.07E-03 |
| 69 | GO:0010583: response to cyclopentenone | 7.40E-03 |
| 70 | GO:0032502: developmental process | 7.40E-03 |
| 71 | GO:0009567: double fertilization forming a zygote and endosperm | 8.08E-03 |
| 72 | GO:0010027: thylakoid membrane organization | 9.13E-03 |
| 73 | GO:0006906: vesicle fusion | 9.87E-03 |
| 74 | GO:0016311: dephosphorylation | 1.06E-02 |
| 75 | GO:0009817: defense response to fungus, incompatible interaction | 1.10E-02 |
| 76 | GO:0010218: response to far red light | 1.18E-02 |
| 77 | GO:0032259: methylation | 1.25E-02 |
| 78 | GO:0009637: response to blue light | 1.30E-02 |
| 79 | GO:0006281: DNA repair | 1.31E-02 |
| 80 | GO:0006887: exocytosis | 1.47E-02 |
| 81 | GO:0010114: response to red light | 1.56E-02 |
| 82 | GO:0009644: response to high light intensity | 1.65E-02 |
| 83 | GO:0031347: regulation of defense response | 1.78E-02 |
| 84 | GO:0007623: circadian rhythm | 3.65E-02 |
| 85 | GO:0006470: protein dephosphorylation | 4.01E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 2 | GO:0036361: racemase activity, acting on amino acids and derivatives | 0.00E+00 |
| 3 | GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives | 0.00E+00 |
| 4 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 5 | GO:0010242: oxygen evolving activity | 6.91E-05 |
| 6 | GO:0019203: carbohydrate phosphatase activity | 6.91E-05 |
| 7 | GO:0050308: sugar-phosphatase activity | 6.91E-05 |
| 8 | GO:0004813: alanine-tRNA ligase activity | 6.91E-05 |
| 9 | GO:0019156: isoamylase activity | 1.66E-04 |
| 10 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 1.66E-04 |
| 11 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 1.66E-04 |
| 12 | GO:0004617: phosphoglycerate dehydrogenase activity | 1.66E-04 |
| 13 | GO:0016851: magnesium chelatase activity | 4.06E-04 |
| 14 | GO:0008508: bile acid:sodium symporter activity | 4.06E-04 |
| 15 | GO:0043495: protein anchor | 5.42E-04 |
| 16 | GO:0004659: prenyltransferase activity | 5.42E-04 |
| 17 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 5.42E-04 |
| 18 | GO:0080032: methyl jasmonate esterase activity | 5.42E-04 |
| 19 | GO:0016597: amino acid binding | 6.55E-04 |
| 20 | GO:0016168: chlorophyll binding | 7.30E-04 |
| 21 | GO:0042578: phosphoric ester hydrolase activity | 8.40E-04 |
| 22 | GO:0004556: alpha-amylase activity | 8.40E-04 |
| 23 | GO:0004462: lactoylglutathione lyase activity | 8.40E-04 |
| 24 | GO:2001070: starch binding | 8.40E-04 |
| 25 | GO:0080030: methyl indole-3-acetate esterase activity | 8.40E-04 |
| 26 | GO:0008195: phosphatidate phosphatase activity | 9.99E-04 |
| 27 | GO:0003993: acid phosphatase activity | 1.16E-03 |
| 28 | GO:0019899: enzyme binding | 1.17E-03 |
| 29 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 1.73E-03 |
| 30 | GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity | 1.73E-03 |
| 31 | GO:0000049: tRNA binding | 2.58E-03 |
| 32 | GO:0008266: poly(U) RNA binding | 3.06E-03 |
| 33 | GO:0031409: pigment binding | 3.56E-03 |
| 34 | GO:0003714: transcription corepressor activity | 3.81E-03 |
| 35 | GO:0031418: L-ascorbic acid binding | 3.81E-03 |
| 36 | GO:0008017: microtubule binding | 4.83E-03 |
| 37 | GO:0022891: substrate-specific transmembrane transporter activity | 4.91E-03 |
| 38 | GO:0042802: identical protein binding | 5.86E-03 |
| 39 | GO:0048038: quinone binding | 7.07E-03 |
| 40 | GO:0016413: O-acetyltransferase activity | 8.77E-03 |
| 41 | GO:0030145: manganese ion binding | 1.22E-02 |
| 42 | GO:0000149: SNARE binding | 1.38E-02 |
| 43 | GO:0005484: SNAP receptor activity | 1.56E-02 |
| 44 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.74E-02 |
| 45 | GO:0051287: NAD binding | 1.78E-02 |
| 46 | GO:0008026: ATP-dependent helicase activity | 2.58E-02 |
| 47 | GO:0019843: rRNA binding | 2.90E-02 |
| 48 | GO:0016829: lyase activity | 3.07E-02 |
| 49 | GO:0003723: RNA binding | 4.74E-02 |
| 50 | GO:0008168: methyltransferase activity | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 2 | GO:0043235: receptor complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.23E-18 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 4.01E-10 |
| 5 | GO:0009570: chloroplast stroma | 1.01E-05 |
| 6 | GO:0009523: photosystem II | 1.76E-05 |
| 7 | GO:0009538: photosystem I reaction center | 3.18E-05 |
| 8 | GO:0031361: integral component of thylakoid membrane | 6.91E-05 |
| 9 | GO:0030095: chloroplast photosystem II | 1.36E-04 |
| 10 | GO:0009579: thylakoid | 1.62E-04 |
| 11 | GO:0009534: chloroplast thylakoid | 1.65E-04 |
| 12 | GO:0033281: TAT protein transport complex | 2.81E-04 |
| 13 | GO:0010007: magnesium chelatase complex | 2.81E-04 |
| 14 | GO:0010287: plastoglobule | 3.52E-04 |
| 15 | GO:0042646: plastid nucleoid | 4.06E-04 |
| 16 | GO:0009941: chloroplast envelope | 4.98E-04 |
| 17 | GO:0009517: PSII associated light-harvesting complex II | 5.42E-04 |
| 18 | GO:0009533: chloroplast stromal thylakoid | 1.17E-03 |
| 19 | GO:0042644: chloroplast nucleoid | 1.73E-03 |
| 20 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.73E-03 |
| 21 | GO:0055028: cortical microtubule | 2.14E-03 |
| 22 | GO:0032040: small-subunit processome | 2.58E-03 |
| 23 | GO:0030076: light-harvesting complex | 3.30E-03 |
| 24 | GO:0009543: chloroplast thylakoid lumen | 3.36E-03 |
| 25 | GO:0042651: thylakoid membrane | 4.08E-03 |
| 26 | GO:0009654: photosystem II oxygen evolving complex | 4.08E-03 |
| 27 | GO:0009522: photosystem I | 6.42E-03 |
| 28 | GO:0009504: cell plate | 6.74E-03 |
| 29 | GO:0019898: extrinsic component of membrane | 6.74E-03 |
| 30 | GO:0031969: chloroplast membrane | 8.84E-03 |
| 31 | GO:0009707: chloroplast outer membrane | 1.10E-02 |
| 32 | GO:0015934: large ribosomal subunit | 1.22E-02 |
| 33 | GO:0031977: thylakoid lumen | 1.47E-02 |
| 34 | GO:0031201: SNARE complex | 1.47E-02 |
| 35 | GO:0012505: endomembrane system | 2.42E-02 |
| 36 | GO:0009524: phragmoplast | 3.01E-02 |
| 37 | GO:0005840: ribosome | 4.91E-02 |