GO Enrichment Analysis of Co-expressed Genes with
AT2G45340
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 2 | GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene | 0.00E+00 |
| 3 | GO:1903409: reactive oxygen species biosynthetic process | 1.00E-04 |
| 4 | GO:0071461: cellular response to redox state | 1.00E-04 |
| 5 | GO:0006430: lysyl-tRNA aminoacylation | 1.00E-04 |
| 6 | GO:0080065: 4-alpha-methyl-delta7-sterol oxidation | 1.00E-04 |
| 7 | GO:1902265: abscisic acid homeostasis | 1.00E-04 |
| 8 | GO:0055062: phosphate ion homeostasis | 1.30E-04 |
| 9 | GO:0055114: oxidation-reduction process | 1.45E-04 |
| 10 | GO:0080005: photosystem stoichiometry adjustment | 2.36E-04 |
| 11 | GO:0007154: cell communication | 2.36E-04 |
| 12 | GO:0009257: 10-formyltetrahydrofolate biosynthetic process | 2.36E-04 |
| 13 | GO:0043100: pyrimidine nucleobase salvage | 2.36E-04 |
| 14 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.36E-04 |
| 15 | GO:0044375: regulation of peroxisome size | 3.92E-04 |
| 16 | GO:0031022: nuclear migration along microfilament | 3.92E-04 |
| 17 | GO:0009113: purine nucleobase biosynthetic process | 5.64E-04 |
| 18 | GO:0006882: cellular zinc ion homeostasis | 5.64E-04 |
| 19 | GO:2001141: regulation of RNA biosynthetic process | 5.64E-04 |
| 20 | GO:0010371: regulation of gibberellin biosynthetic process | 5.64E-04 |
| 21 | GO:1902476: chloride transmembrane transport | 5.64E-04 |
| 22 | GO:0010148: transpiration | 5.64E-04 |
| 23 | GO:0009902: chloroplast relocation | 7.50E-04 |
| 24 | GO:0010021: amylopectin biosynthetic process | 7.50E-04 |
| 25 | GO:0006552: leucine catabolic process | 7.50E-04 |
| 26 | GO:0010236: plastoquinone biosynthetic process | 9.47E-04 |
| 27 | GO:0016120: carotene biosynthetic process | 9.47E-04 |
| 28 | GO:0071805: potassium ion transmembrane transport | 9.96E-04 |
| 29 | GO:0016126: sterol biosynthetic process | 1.11E-03 |
| 30 | GO:0006555: methionine metabolic process | 1.16E-03 |
| 31 | GO:0010411: xyloglucan metabolic process | 1.30E-03 |
| 32 | GO:0009903: chloroplast avoidance movement | 1.38E-03 |
| 33 | GO:0019509: L-methionine salvage from methylthioadenosine | 1.38E-03 |
| 34 | GO:0006821: chloride transport | 1.62E-03 |
| 35 | GO:0030026: cellular manganese ion homeostasis | 1.62E-03 |
| 36 | GO:0050790: regulation of catalytic activity | 1.62E-03 |
| 37 | GO:0009396: folic acid-containing compound biosynthetic process | 1.62E-03 |
| 38 | GO:0009850: auxin metabolic process | 1.87E-03 |
| 39 | GO:0009231: riboflavin biosynthetic process | 1.87E-03 |
| 40 | GO:0006102: isocitrate metabolic process | 1.87E-03 |
| 41 | GO:0016559: peroxisome fission | 1.87E-03 |
| 42 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 1.87E-03 |
| 43 | GO:0071482: cellular response to light stimulus | 2.14E-03 |
| 44 | GO:0009821: alkaloid biosynthetic process | 2.41E-03 |
| 45 | GO:0034765: regulation of ion transmembrane transport | 2.41E-03 |
| 46 | GO:0035999: tetrahydrofolate interconversion | 2.70E-03 |
| 47 | GO:0045036: protein targeting to chloroplast | 3.00E-03 |
| 48 | GO:0006352: DNA-templated transcription, initiation | 3.31E-03 |
| 49 | GO:0016485: protein processing | 3.31E-03 |
| 50 | GO:0006816: calcium ion transport | 3.31E-03 |
| 51 | GO:0008285: negative regulation of cell proliferation | 3.31E-03 |
| 52 | GO:0030048: actin filament-based movement | 3.95E-03 |
| 53 | GO:0050826: response to freezing | 3.95E-03 |
| 54 | GO:0007031: peroxisome organization | 4.64E-03 |
| 55 | GO:0006071: glycerol metabolic process | 5.00E-03 |
| 56 | GO:0010073: meristem maintenance | 5.75E-03 |
| 57 | GO:0008299: isoprenoid biosynthetic process | 5.75E-03 |
| 58 | GO:0006418: tRNA aminoacylation for protein translation | 5.75E-03 |
| 59 | GO:0031408: oxylipin biosynthetic process | 6.14E-03 |
| 60 | GO:0006366: transcription from RNA polymerase II promoter | 6.14E-03 |
| 61 | GO:0019748: secondary metabolic process | 6.54E-03 |
| 62 | GO:0010227: floral organ abscission | 6.94E-03 |
| 63 | GO:0016117: carotenoid biosynthetic process | 7.78E-03 |
| 64 | GO:0042335: cuticle development | 8.21E-03 |
| 65 | GO:0042391: regulation of membrane potential | 8.21E-03 |
| 66 | GO:0010182: sugar mediated signaling pathway | 8.65E-03 |
| 67 | GO:0009741: response to brassinosteroid | 8.65E-03 |
| 68 | GO:0019252: starch biosynthetic process | 9.56E-03 |
| 69 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.00E-02 |
| 70 | GO:1901657: glycosyl compound metabolic process | 1.10E-02 |
| 71 | GO:0009658: chloroplast organization | 1.18E-02 |
| 72 | GO:0010029: regulation of seed germination | 1.35E-02 |
| 73 | GO:0042128: nitrate assimilation | 1.40E-02 |
| 74 | GO:0015995: chlorophyll biosynthetic process | 1.46E-02 |
| 75 | GO:0048481: plant ovule development | 1.57E-02 |
| 76 | GO:0018298: protein-chromophore linkage | 1.57E-02 |
| 77 | GO:0010043: response to zinc ion | 1.74E-02 |
| 78 | GO:0007568: aging | 1.74E-02 |
| 79 | GO:0009631: cold acclimation | 1.74E-02 |
| 80 | GO:0006865: amino acid transport | 1.80E-02 |
| 81 | GO:0009637: response to blue light | 1.86E-02 |
| 82 | GO:0006099: tricarboxylic acid cycle | 1.91E-02 |
| 83 | GO:0009640: photomorphogenesis | 2.22E-02 |
| 84 | GO:0042546: cell wall biogenesis | 2.29E-02 |
| 85 | GO:0006508: proteolysis | 2.56E-02 |
| 86 | GO:0009809: lignin biosynthetic process | 2.75E-02 |
| 87 | GO:0006813: potassium ion transport | 2.75E-02 |
| 88 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.81E-02 |
| 89 | GO:0006857: oligopeptide transport | 2.88E-02 |
| 90 | GO:0005975: carbohydrate metabolic process | 3.34E-02 |
| 91 | GO:0009624: response to nematode | 3.53E-02 |
| 92 | GO:0035556: intracellular signal transduction | 4.05E-02 |
| 93 | GO:0009058: biosynthetic process | 4.30E-02 |
| 94 | GO:0042744: hydrogen peroxide catabolic process | 4.54E-02 |
| 95 | GO:0006457: protein folding | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047504: (-)-menthol dehydrogenase activity | 0.00E+00 |
| 2 | GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity | 0.00E+00 |
| 3 | GO:0047501: (+)-neomenthol dehydrogenase activity | 0.00E+00 |
| 4 | GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity | 0.00E+00 |
| 5 | GO:0016719: carotene 7,8-desaturase activity | 0.00E+00 |
| 6 | GO:0015205: nucleobase transmembrane transporter activity | 0.00E+00 |
| 7 | GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity | 0.00E+00 |
| 8 | GO:0008106: alcohol dehydrogenase (NADP+) activity | 4.78E-06 |
| 9 | GO:0016491: oxidoreductase activity | 7.57E-05 |
| 10 | GO:0052638: indole-3-butyrate beta-glucosyltransferase activity | 1.00E-04 |
| 11 | GO:0016783: sulfurtransferase activity | 1.00E-04 |
| 12 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 1.00E-04 |
| 13 | GO:0004485: methylcrotonoyl-CoA carboxylase activity | 1.00E-04 |
| 14 | GO:0046480: galactolipid galactosyltransferase activity | 1.00E-04 |
| 15 | GO:0080079: cellobiose glucosidase activity | 1.00E-04 |
| 16 | GO:0004824: lysine-tRNA ligase activity | 1.00E-04 |
| 17 | GO:0015085: calcium ion transmembrane transporter activity | 1.00E-04 |
| 18 | GO:0001530: lipopolysaccharide binding | 1.00E-04 |
| 19 | GO:0009671: nitrate:proton symporter activity | 1.00E-04 |
| 20 | GO:0004329: formate-tetrahydrofolate ligase activity | 2.36E-04 |
| 21 | GO:0004450: isocitrate dehydrogenase (NADP+) activity | 2.36E-04 |
| 22 | GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | 2.36E-04 |
| 23 | GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity | 2.36E-04 |
| 24 | GO:0033201: alpha-1,4-glucan synthase activity | 2.36E-04 |
| 25 | GO:0015173: aromatic amino acid transmembrane transporter activity | 2.36E-04 |
| 26 | GO:0050347: trans-octaprenyltranstransferase activity | 2.36E-04 |
| 27 | GO:0004477: methenyltetrahydrofolate cyclohydrolase activity | 2.36E-04 |
| 28 | GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity | 2.36E-04 |
| 29 | GO:0004046: aminoacylase activity | 2.36E-04 |
| 30 | GO:0003988: acetyl-CoA C-acyltransferase activity | 2.36E-04 |
| 31 | GO:0004075: biotin carboxylase activity | 3.92E-04 |
| 32 | GO:0004180: carboxypeptidase activity | 3.92E-04 |
| 33 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 3.92E-04 |
| 34 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 3.92E-04 |
| 35 | GO:0004373: glycogen (starch) synthase activity | 3.92E-04 |
| 36 | GO:0003913: DNA photolyase activity | 3.92E-04 |
| 37 | GO:0004557: alpha-galactosidase activity | 3.92E-04 |
| 38 | GO:0003935: GTP cyclohydrolase II activity | 3.92E-04 |
| 39 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.43E-04 |
| 40 | GO:0004792: thiosulfate sulfurtransferase activity | 5.64E-04 |
| 41 | GO:0000254: C-4 methylsterol oxidase activity | 5.64E-04 |
| 42 | GO:0015175: neutral amino acid transmembrane transporter activity | 5.64E-04 |
| 43 | GO:0016851: magnesium chelatase activity | 5.64E-04 |
| 44 | GO:0009011: starch synthase activity | 7.50E-04 |
| 45 | GO:0005253: anion channel activity | 7.50E-04 |
| 46 | GO:0015368: calcium:cation antiporter activity | 7.50E-04 |
| 47 | GO:0001053: plastid sigma factor activity | 7.50E-04 |
| 48 | GO:0015369: calcium:proton antiporter activity | 7.50E-04 |
| 49 | GO:0016987: sigma factor activity | 7.50E-04 |
| 50 | GO:0004506: squalene monooxygenase activity | 7.50E-04 |
| 51 | GO:0005247: voltage-gated chloride channel activity | 1.16E-03 |
| 52 | GO:2001070: starch binding | 1.16E-03 |
| 53 | GO:0004709: MAP kinase kinase kinase activity | 1.16E-03 |
| 54 | GO:0005242: inward rectifier potassium channel activity | 1.38E-03 |
| 55 | GO:0016621: cinnamoyl-CoA reductase activity | 1.62E-03 |
| 56 | GO:0009881: photoreceptor activity | 1.62E-03 |
| 57 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 2.41E-03 |
| 58 | GO:0016844: strictosidine synthase activity | 2.70E-03 |
| 59 | GO:0004129: cytochrome-c oxidase activity | 3.31E-03 |
| 60 | GO:0008378: galactosyltransferase activity | 3.63E-03 |
| 61 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 4.30E-03 |
| 62 | GO:0001046: core promoter sequence-specific DNA binding | 5.37E-03 |
| 63 | GO:0015079: potassium ion transmembrane transporter activity | 5.75E-03 |
| 64 | GO:0004176: ATP-dependent peptidase activity | 6.14E-03 |
| 65 | GO:0004812: aminoacyl-tRNA ligase activity | 7.78E-03 |
| 66 | GO:0005249: voltage-gated potassium channel activity | 8.21E-03 |
| 67 | GO:0030551: cyclic nucleotide binding | 8.21E-03 |
| 68 | GO:0008080: N-acetyltransferase activity | 8.65E-03 |
| 69 | GO:0050662: coenzyme binding | 9.10E-03 |
| 70 | GO:0010181: FMN binding | 9.10E-03 |
| 71 | GO:0042802: identical protein binding | 9.68E-03 |
| 72 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.00E-02 |
| 73 | GO:0048038: quinone binding | 1.00E-02 |
| 74 | GO:0004197: cysteine-type endopeptidase activity | 1.05E-02 |
| 75 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.16E-02 |
| 76 | GO:0008237: metallopeptidase activity | 1.20E-02 |
| 77 | GO:0016413: O-acetyltransferase activity | 1.25E-02 |
| 78 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.46E-02 |
| 79 | GO:0030247: polysaccharide binding | 1.46E-02 |
| 80 | GO:0008236: serine-type peptidase activity | 1.51E-02 |
| 81 | GO:0004222: metalloendopeptidase activity | 1.68E-02 |
| 82 | GO:0050897: cobalt ion binding | 1.74E-02 |
| 83 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 1.74E-02 |
| 84 | GO:0004871: signal transducer activity | 1.84E-02 |
| 85 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.86E-02 |
| 86 | GO:0003993: acid phosphatase activity | 1.91E-02 |
| 87 | GO:0008422: beta-glucosidase activity | 1.97E-02 |
| 88 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 1.97E-02 |
| 89 | GO:0004185: serine-type carboxypeptidase activity | 2.22E-02 |
| 90 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.35E-02 |
| 91 | GO:0015293: symporter activity | 2.41E-02 |
| 92 | GO:0051287: NAD binding | 2.55E-02 |
| 93 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.75E-02 |
| 94 | GO:0008234: cysteine-type peptidase activity | 2.95E-02 |
| 95 | GO:0015171: amino acid transmembrane transporter activity | 2.95E-02 |
| 96 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 3.31E-02 |
| 97 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 3.31E-02 |
| 98 | GO:0016887: ATPase activity | 3.36E-02 |
| 99 | GO:0016758: transferase activity, transferring hexosyl groups | 4.06E-02 |
| 100 | GO:0016740: transferase activity | 4.67E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.15E-05 |
| 2 | GO:0009509: chromoplast | 3.92E-04 |
| 3 | GO:0009526: plastid envelope | 7.50E-04 |
| 4 | GO:0034707: chloride channel complex | 1.16E-03 |
| 5 | GO:0031359: integral component of chloroplast outer membrane | 1.62E-03 |
| 6 | GO:0009501: amyloplast | 1.87E-03 |
| 7 | GO:0005777: peroxisome | 2.00E-03 |
| 8 | GO:0005773: vacuole | 2.01E-03 |
| 9 | GO:0005779: integral component of peroxisomal membrane | 2.14E-03 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.41E-03 |
| 11 | GO:0005764: lysosome | 4.30E-03 |
| 12 | GO:0009532: plastid stroma | 6.14E-03 |
| 13 | GO:0009705: plant-type vacuole membrane | 7.61E-03 |
| 14 | GO:0005615: extracellular space | 8.52E-03 |
| 15 | GO:0005778: peroxisomal membrane | 1.20E-02 |
| 16 | GO:0031969: chloroplast membrane | 1.47E-02 |
| 17 | GO:0009707: chloroplast outer membrane | 1.57E-02 |
| 18 | GO:0009535: chloroplast thylakoid membrane | 1.60E-02 |
| 19 | GO:0005886: plasma membrane | 2.45E-02 |
| 20 | GO:0009505: plant-type cell wall | 2.64E-02 |
| 21 | GO:0005783: endoplasmic reticulum | 3.12E-02 |
| 22 | GO:0009706: chloroplast inner membrane | 3.53E-02 |
| 23 | GO:0009543: chloroplast thylakoid lumen | 4.14E-02 |
| 24 | GO:0005623: cell | 4.22E-02 |
| 25 | GO:0009941: chloroplast envelope | 4.74E-02 |
| 26 | GO:0005759: mitochondrial matrix | 4.87E-02 |