co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G45180

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090279: regulation of calcium ion import	0.00E+00
2	GO:0015717: triose phosphate transport	0.00E+00
3	GO:0071474: cellular hyperosmotic response	0.00E+00
4	GO:0007172: signal complex assembly	0.00E+00
5	GO:0015979: photosynthesis	7.61E-18
6	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.70E-07
7	GO:0006000: fructose metabolic process	1.03E-06
8	GO:0009773: photosynthetic electron transport in photosystem I	1.11E-06
9	GO:0006094: gluconeogenesis	1.83E-06
10	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.48E-06
11	GO:0006109: regulation of carbohydrate metabolic process	4.77E-06
12	GO:0009768: photosynthesis, light harvesting in photosystem I	4.94E-06
13	GO:0009735: response to cytokinin	8.23E-06
14	GO:0009645: response to low light intensity stimulus	2.41E-05
15	GO:0006002: fructose 6-phosphate metabolic process	4.07E-05
16	GO:0018298: protein-chromophore linkage	5.43E-05
17	GO:0010480: microsporocyte differentiation	6.91E-05
18	GO:0080093: regulation of photorespiration	6.91E-05
19	GO:0031998: regulation of fatty acid beta-oxidation	6.91E-05
20	GO:0043085: positive regulation of catalytic activity	8.80E-05
21	GO:0005986: sucrose biosynthetic process	1.19E-04
22	GO:0009644: response to high light intensity	1.27E-04
23	GO:0009934: regulation of meristem structural organization	1.36E-04
24	GO:0009409: response to cold	1.42E-04
25	GO:0051262: protein tetramerization	1.66E-04
26	GO:0043086: negative regulation of catalytic activity	2.19E-04
27	GO:0035436: triose phosphate transmembrane transport	2.81E-04
28	GO:0006662: glycerol ether metabolic process	3.94E-04
29	GO:1901332: negative regulation of lateral root development	4.06E-04
30	GO:0015976: carbon utilization	5.42E-04
31	GO:0010023: proanthocyanidin biosynthetic process	5.42E-04
32	GO:0009765: photosynthesis, light harvesting	5.42E-04
33	GO:0015713: phosphoglycerate transport	5.42E-04
34	GO:0006097: glyoxylate cycle	6.87E-04
35	GO:0035434: copper ion transmembrane transport	6.87E-04
36	GO:0009643: photosynthetic acclimation	8.40E-04
37	GO:0042549: photosystem II stabilization	8.40E-04
38	GO:0006810: transport	8.71E-04
39	GO:0010218: response to far red light	9.79E-04
40	GO:0009955: adaxial/abaxial pattern specification	9.99E-04
41	GO:1901259: chloroplast rRNA processing	9.99E-04
42	GO:0009637: response to blue light	1.12E-03
43	GO:0034599: cellular response to oxidative stress	1.16E-03
44	GO:0048437: floral organ development	1.17E-03
45	GO:0006353: DNA-templated transcription, termination	1.34E-03
46	GO:0010114: response to red light	1.42E-03
47	GO:0032544: plastid translation	1.53E-03
48	GO:0045454: cell redox homeostasis	1.59E-03
49	GO:0042761: very long-chain fatty acid biosynthetic process	1.93E-03
50	GO:0019684: photosynthesis, light reaction	2.36E-03
51	GO:0009750: response to fructose	2.36E-03
52	GO:0048229: gametophyte development	2.36E-03
53	GO:0010015: root morphogenesis	2.36E-03
54	GO:0030154: cell differentiation	2.49E-03
55	GO:0071365: cellular response to auxin stimulus	2.58E-03
56	GO:0005983: starch catabolic process	2.58E-03
57	GO:0006108: malate metabolic process	2.82E-03
58	GO:0009718: anthocyanin-containing compound biosynthetic process	2.82E-03
59	GO:0010075: regulation of meristem growth	2.82E-03
60	GO:0006302: double-strand break repair	3.06E-03
61	GO:0019253: reductive pentose-phosphate cycle	3.06E-03
62	GO:0005985: sucrose metabolic process	3.30E-03
63	GO:0010025: wax biosynthetic process	3.56E-03
64	GO:0006825: copper ion transport	4.08E-03
65	GO:0007017: microtubule-based process	4.08E-03
66	GO:0051321: meiotic cell cycle	4.35E-03
67	GO:0061077: chaperone-mediated protein folding	4.35E-03
68	GO:0048653: anther development	5.80E-03
69	GO:0071554: cell wall organization or biogenesis	7.07E-03
70	GO:0048235: pollen sperm cell differentiation	7.40E-03
71	GO:0006970: response to osmotic stress	7.68E-03
72	GO:0071281: cellular response to iron ion	7.73E-03
73	GO:0006310: DNA recombination	8.08E-03
74	GO:0009723: response to ethylene	8.25E-03
75	GO:0080167: response to karrikin	8.84E-03
76	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.15E-03
77	GO:0009627: systemic acquired resistance	9.87E-03
78	GO:0015995: chlorophyll biosynthetic process	1.02E-02
79	GO:0042742: defense response to bacterium	1.05E-02
80	GO:0016311: dephosphorylation	1.06E-02
81	GO:0006869: lipid transport	1.16E-02
82	GO:0009751: response to salicylic acid	1.29E-02
83	GO:0006099: tricarboxylic acid cycle	1.34E-02
84	GO:0006096: glycolytic process	2.17E-02
85	GO:0006412: translation	2.64E-02
86	GO:0009737: response to abscisic acid	2.72E-02
87	GO:0009739: response to gibberellin	3.95E-02
88	GO:0006979: response to oxidative stress	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.70E-07
2	GO:0031409: pigment binding	3.44E-06
3	GO:0004857: enzyme inhibitor activity	4.14E-06
4	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.77E-06
5	GO:0016168: chlorophyll binding	3.91E-05
6	GO:0005227: calcium activated cation channel activity	6.91E-05
7	GO:0008047: enzyme activator activity	7.43E-05
8	GO:0033612: receptor serine/threonine kinase binding	2.38E-04
9	GO:0071917: triose-phosphate transmembrane transporter activity	2.81E-04
10	GO:0015035: protein disulfide oxidoreductase activity	2.93E-04
11	GO:0047134: protein-disulfide reductase activity	3.38E-04
12	GO:0016851: magnesium chelatase activity	4.06E-04
13	GO:0004791: thioredoxin-disulfide reductase activity	4.23E-04
14	GO:0048038: quinone binding	4.85E-04
15	GO:0015120: phosphoglycerate transmembrane transporter activity	5.42E-04
16	GO:0080032: methyl jasmonate esterase activity	5.42E-04
17	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.49E-04
18	GO:0016615: malate dehydrogenase activity	8.40E-04
19	GO:0080030: methyl indole-3-acetate esterase activity	8.40E-04
20	GO:0004332: fructose-bisphosphate aldolase activity	8.40E-04
21	GO:0030060: L-malate dehydrogenase activity	9.99E-04
22	GO:0005261: cation channel activity	9.99E-04
23	GO:0005375: copper ion transmembrane transporter activity	1.53E-03
24	GO:0004089: carbonate dehydratase activity	2.82E-03
25	GO:0004565: beta-galactosidase activity	2.82E-03
26	GO:0008266: poly(U) RNA binding	3.06E-03
27	GO:0019843: rRNA binding	3.36E-03
28	GO:0005528: FK506 binding	3.81E-03
29	GO:0008408: 3'-5' exonuclease activity	4.35E-03
30	GO:0001085: RNA polymerase II transcription factor binding	6.11E-03
31	GO:0003735: structural constituent of ribosome	6.22E-03
32	GO:0005200: structural constituent of cytoskeleton	8.42E-03
33	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	8.42E-03
34	GO:0016413: O-acetyltransferase activity	8.77E-03
35	GO:0005509: calcium ion binding	9.46E-03
36	GO:0030145: manganese ion binding	1.22E-02
37	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.22E-02
38	GO:0051537: 2 iron, 2 sulfur cluster binding	1.65E-02
39	GO:0043621: protein self-association	1.65E-02
40	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.74E-02
41	GO:0008289: lipid binding	1.82E-02
42	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.22E-02
43	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.18E-02
44	GO:0046910: pectinesterase inhibitor activity	3.47E-02
45	GO:0015297: antiporter activity	3.53E-02
46	GO:0044212: transcription regulatory region DNA binding	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009535: chloroplast thylakoid membrane	4.61E-24
4	GO:0009534: chloroplast thylakoid	4.12E-18
5	GO:0009507: chloroplast	8.93E-16
6	GO:0009579: thylakoid	5.43E-15
7	GO:0009941: chloroplast envelope	1.11E-11
8	GO:0009538: photosystem I reaction center	7.74E-10
9	GO:0030095: chloroplast photosystem II	1.85E-08
10	GO:0009570: chloroplast stroma	1.48E-07
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.53E-07
12	GO:0010287: plastoglobule	9.19E-07
13	GO:0009543: chloroplast thylakoid lumen	1.06E-06
14	GO:0030076: light-harvesting complex	2.81E-06
15	GO:0009654: photosystem II oxygen evolving complex	4.94E-06
16	GO:0048046: apoplast	7.26E-06
17	GO:0009522: photosystem I	1.56E-05
18	GO:0019898: extrinsic component of membrane	1.76E-05
19	GO:0009782: photosystem I antenna complex	6.91E-05
20	GO:0000791: euchromatin	6.91E-05
21	GO:0030870: Mre11 complex	1.66E-04
22	GO:0010007: magnesium chelatase complex	2.81E-04
23	GO:0009523: photosystem II	4.53E-04
24	GO:0010319: stromule	6.19E-04
25	GO:0030915: Smc5-Smc6 complex	6.87E-04
26	GO:0000795: synaptonemal complex	6.87E-04
27	GO:0031977: thylakoid lumen	1.32E-03
28	GO:0005763: mitochondrial small ribosomal subunit	1.73E-03
29	GO:0045298: tubulin complex	1.73E-03
30	GO:0016020: membrane	2.98E-03
31	GO:0042651: thylakoid membrane	4.08E-03
32	GO:0015935: small ribosomal subunit	4.35E-03
33	GO:0000785: chromatin	7.40E-03
34	GO:0005667: transcription factor complex	9.87E-03
35	GO:0005840: ribosome	1.11E-02
36	GO:0000325: plant-type vacuole	1.22E-02
37	GO:0009505: plant-type cell wall	1.40E-02
38	GO:0005834: heterotrimeric G-protein complex	2.27E-02
39	GO:0016021: integral component of membrane	2.50E-02
40	GO:0005622: intracellular	4.12E-02