Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G45000

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0055122: response to very low light intensity stimulus0.00E+00
2GO:0036228: protein targeting to nuclear inner membrane1.67E-05
3GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic1.67E-05
4GO:1902182: shoot apical meristem development1.67E-05
5GO:0000972: transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery1.67E-05
6GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.35E-05
7GO:0006610: ribosomal protein import into nucleus4.35E-05
8GO:0006606: protein import into nucleus5.28E-05
9GO:0042780: tRNA 3'-end processing7.77E-05
10GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic7.77E-05
11GO:0045604: regulation of epidermal cell differentiation7.77E-05
12GO:0007276: gamete generation1.17E-04
13GO:0016973: poly(A)+ mRNA export from nucleus2.09E-04
14GO:0006405: RNA export from nucleus2.09E-04
15GO:0000060: protein import into nucleus, translocation2.59E-04
16GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.11E-04
17GO:0048444: floral organ morphogenesis3.11E-04
18GO:0010077: maintenance of inflorescence meristem identity3.11E-04
19GO:0045995: regulation of embryonic development3.66E-04
20GO:0006997: nucleus organization4.82E-04
21GO:0009880: embryonic pattern specification4.82E-04
22GO:2000024: regulation of leaf development5.42E-04
23GO:0006607: NLS-bearing protein import into nucleus5.42E-04
24GO:0006349: regulation of gene expression by genetic imprinting6.04E-04
25GO:0006457: protein folding6.10E-04
26GO:0006913: nucleocytoplasmic transport7.34E-04
27GO:0051302: regulation of cell division1.23E-03
28GO:0010501: RNA secondary structure unwinding1.73E-03
29GO:0010197: polar nucleus fusion1.82E-03
30GO:0006342: chromatin silencing1.82E-03
31GO:0009960: endosperm development1.82E-03
32GO:0048825: cotyledon development2.00E-03
33GO:0009793: embryo development ending in seed dormancy3.02E-03
34GO:0051301: cell division4.18E-03
35GO:0006260: DNA replication5.09E-03
36GO:0006364: rRNA processing5.48E-03
37GO:0009909: regulation of flower development5.88E-03
38GO:0006417: regulation of translation5.88E-03
39GO:0009553: embryo sac development6.84E-03
40GO:0006413: translational initiation9.74E-03
41GO:0009451: RNA modification1.04E-02
42GO:0010228: vegetative to reproductive phase transition of meristem1.06E-02
43GO:0042254: ribosome biogenesis1.41E-02
44GO:0048366: leaf development1.56E-02
45GO:0045892: negative regulation of transcription, DNA-templated1.86E-02
46GO:0009408: response to heat2.14E-02
RankGO TermAdjusted P value
1GO:0000166: nucleotide binding3.68E-08
2GO:0001054: RNA polymerase I activity1.03E-05
3GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters4.35E-05
4GO:0043021: ribonucleoprotein complex binding4.35E-05
5GO:0042781: 3'-tRNA processing endoribonuclease activity7.77E-05
6GO:0004004: ATP-dependent RNA helicase activity1.33E-04
7GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.37E-04
8GO:0030515: snoRNA binding3.66E-04
9GO:0017056: structural constituent of nuclear pore4.23E-04
10GO:0008026: ATP-dependent helicase activity5.04E-04
11GO:0005487: nucleocytoplasmic transporter activity6.04E-04
12GO:0003723: RNA binding6.24E-04
13GO:0008139: nuclear localization sequence binding8.70E-04
14GO:0003887: DNA-directed DNA polymerase activity1.08E-03
15GO:0043130: ubiquitin binding1.16E-03
16GO:0008536: Ran GTPase binding1.82E-03
17GO:0042393: histone binding4.11E-03
18GO:0008565: protein transporter activity9.26E-03
19GO:0003743: translation initiation factor activity1.14E-02
20GO:0005515: protein binding2.27E-02
21GO:0004519: endonuclease activity2.27E-02
22GO:0005524: ATP binding3.78E-02
23GO:0005525: GTP binding4.59E-02
RankGO TermAdjusted P value
1GO:0005643: nuclear pore2.71E-06
2GO:0034399: nuclear periphery3.30E-06
3GO:0005736: DNA-directed RNA polymerase I complex5.52E-06
4GO:0034388: Pwp2p-containing subcomplex of 90S preribosome1.67E-05
5GO:0044611: nuclear pore inner ring1.67E-05
6GO:0005730: nucleolus2.84E-05
7GO:0070545: PeBoW complex4.35E-05
8GO:0005634: nucleus9.90E-05
9GO:0030687: preribosome, large subunit precursor3.66E-04
10GO:0032040: small-subunit processome8.01E-04
11GO:0080008: Cul4-RING E3 ubiquitin ligase complex1.33E-03
12GO:0031965: nuclear membrane2.00E-03
13GO:0005635: nuclear envelope5.74E-03
14GO:0005829: cytosol2.10E-02
15GO:0009506: plasmodesma2.75E-02
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Gene type



Gene DE type