GO Enrichment Analysis of Co-expressed Genes with
AT2G44860
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 2 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 3 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 4 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 5 | GO:0031120: snRNA pseudouridine synthesis | 0.00E+00 |
| 6 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 7 | GO:0031118: rRNA pseudouridine synthesis | 0.00E+00 |
| 8 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 9 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 10 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 11 | GO:0034050: host programmed cell death induced by symbiont | 0.00E+00 |
| 12 | GO:1904874: positive regulation of telomerase RNA localization to Cajal body | 0.00E+00 |
| 13 | GO:0006412: translation | 3.82E-81 |
| 14 | GO:0042254: ribosome biogenesis | 9.08E-28 |
| 15 | GO:0006364: rRNA processing | 9.72E-16 |
| 16 | GO:0006626: protein targeting to mitochondrion | 8.40E-10 |
| 17 | GO:0042274: ribosomal small subunit biogenesis | 8.68E-07 |
| 18 | GO:0000470: maturation of LSU-rRNA | 3.73E-06 |
| 19 | GO:0009735: response to cytokinin | 4.85E-06 |
| 20 | GO:0048569: post-embryonic animal organ development | 6.85E-06 |
| 21 | GO:0006413: translational initiation | 8.83E-06 |
| 22 | GO:0000027: ribosomal large subunit assembly | 9.16E-06 |
| 23 | GO:0007005: mitochondrion organization | 1.70E-05 |
| 24 | GO:0042256: mature ribosome assembly | 2.39E-05 |
| 25 | GO:0045039: protein import into mitochondrial inner membrane | 2.39E-05 |
| 26 | GO:0010162: seed dormancy process | 5.16E-05 |
| 27 | GO:0000460: maturation of 5.8S rRNA | 9.22E-05 |
| 28 | GO:0042273: ribosomal large subunit biogenesis | 9.22E-05 |
| 29 | GO:0031167: rRNA methylation | 1.43E-04 |
| 30 | GO:0000054: ribosomal subunit export from nucleus | 2.77E-04 |
| 31 | GO:0006458: 'de novo' protein folding | 2.77E-04 |
| 32 | GO:0009955: adaxial/abaxial pattern specification | 2.77E-04 |
| 33 | GO:0019877: diaminopimelate biosynthetic process | 3.92E-04 |
| 34 | GO:0043985: histone H4-R3 methylation | 3.92E-04 |
| 35 | GO:0006169: adenosine salvage | 3.92E-04 |
| 36 | GO:0006407: rRNA export from nucleus | 3.92E-04 |
| 37 | GO:0000469: cleavage involved in rRNA processing | 3.92E-04 |
| 38 | GO:0035266: meristem growth | 3.92E-04 |
| 39 | GO:0030490: maturation of SSU-rRNA | 3.92E-04 |
| 40 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.92E-04 |
| 41 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.92E-04 |
| 42 | GO:0008033: tRNA processing | 4.45E-04 |
| 43 | GO:0000028: ribosomal small subunit assembly | 4.48E-04 |
| 44 | GO:0010197: polar nucleus fusion | 4.90E-04 |
| 45 | GO:0001510: RNA methylation | 5.48E-04 |
| 46 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 8.49E-04 |
| 47 | GO:0045905: positive regulation of translational termination | 8.49E-04 |
| 48 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 8.49E-04 |
| 49 | GO:0045901: positive regulation of translational elongation | 8.49E-04 |
| 50 | GO:0045041: protein import into mitochondrial intermembrane space | 8.49E-04 |
| 51 | GO:0034470: ncRNA processing | 8.49E-04 |
| 52 | GO:0006452: translational frameshifting | 8.49E-04 |
| 53 | GO:0009967: positive regulation of signal transduction | 8.49E-04 |
| 54 | GO:0006913: nucleocytoplasmic transport | 1.04E-03 |
| 55 | GO:0009553: embryo sac development | 1.10E-03 |
| 56 | GO:0046686: response to cadmium ion | 1.27E-03 |
| 57 | GO:0006556: S-adenosylmethionine biosynthetic process | 1.38E-03 |
| 58 | GO:1902626: assembly of large subunit precursor of preribosome | 1.38E-03 |
| 59 | GO:0002181: cytoplasmic translation | 1.38E-03 |
| 60 | GO:0006414: translational elongation | 1.96E-03 |
| 61 | GO:0006164: purine nucleotide biosynthetic process | 1.99E-03 |
| 62 | GO:0009855: determination of bilateral symmetry | 1.99E-03 |
| 63 | GO:0051131: chaperone-mediated protein complex assembly | 1.99E-03 |
| 64 | GO:0007004: telomere maintenance via telomerase | 1.99E-03 |
| 65 | GO:0010971: positive regulation of G2/M transition of mitotic cell cycle | 1.99E-03 |
| 66 | GO:0030150: protein import into mitochondrial matrix | 2.10E-03 |
| 67 | GO:0009944: polarity specification of adaxial/abaxial axis | 2.10E-03 |
| 68 | GO:0015031: protein transport | 2.23E-03 |
| 69 | GO:0006334: nucleosome assembly | 2.54E-03 |
| 70 | GO:0061077: chaperone-mediated protein folding | 2.54E-03 |
| 71 | GO:0051205: protein insertion into membrane | 2.67E-03 |
| 72 | GO:0051781: positive regulation of cell division | 2.67E-03 |
| 73 | GO:0071215: cellular response to abscisic acid stimulus | 3.04E-03 |
| 74 | GO:0009294: DNA mediated transformation | 3.04E-03 |
| 75 | GO:0040007: growth | 3.04E-03 |
| 76 | GO:0097428: protein maturation by iron-sulfur cluster transfer | 3.42E-03 |
| 77 | GO:0006461: protein complex assembly | 3.42E-03 |
| 78 | GO:0044209: AMP salvage | 3.42E-03 |
| 79 | GO:0010375: stomatal complex patterning | 3.42E-03 |
| 80 | GO:0009793: embryo development ending in seed dormancy | 3.53E-03 |
| 81 | GO:0006606: protein import into nucleus | 3.87E-03 |
| 82 | GO:0000741: karyogamy | 4.23E-03 |
| 83 | GO:0016070: RNA metabolic process | 4.23E-03 |
| 84 | GO:0016554: cytidine to uridine editing | 4.23E-03 |
| 85 | GO:0042026: protein refolding | 5.09E-03 |
| 86 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 5.09E-03 |
| 87 | GO:0016444: somatic cell DNA recombination | 5.09E-03 |
| 88 | GO:0010374: stomatal complex development | 6.02E-03 |
| 89 | GO:0080186: developmental vegetative growth | 6.02E-03 |
| 90 | GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | 7.00E-03 |
| 91 | GO:0001522: pseudouridine synthesis | 7.00E-03 |
| 92 | GO:0001558: regulation of cell growth | 8.03E-03 |
| 93 | GO:0022900: electron transport chain | 8.03E-03 |
| 94 | GO:0048507: meristem development | 9.12E-03 |
| 95 | GO:0006189: 'de novo' IMP biosynthetic process | 9.12E-03 |
| 96 | GO:0007338: single fertilization | 9.12E-03 |
| 97 | GO:0010311: lateral root formation | 1.03E-02 |
| 98 | GO:0010449: root meristem growth | 1.03E-02 |
| 99 | GO:0030422: production of siRNA involved in RNA interference | 1.14E-02 |
| 100 | GO:0006259: DNA metabolic process | 1.14E-02 |
| 101 | GO:0009089: lysine biosynthetic process via diaminopimelate | 1.27E-02 |
| 102 | GO:0006879: cellular iron ion homeostasis | 1.27E-02 |
| 103 | GO:0006352: DNA-templated transcription, initiation | 1.27E-02 |
| 104 | GO:0010015: root morphogenesis | 1.27E-02 |
| 105 | GO:0012501: programmed cell death | 1.40E-02 |
| 106 | GO:0006820: anion transport | 1.40E-02 |
| 107 | GO:0006108: malate metabolic process | 1.53E-02 |
| 108 | GO:2000012: regulation of auxin polar transport | 1.53E-02 |
| 109 | GO:0008283: cell proliferation | 1.60E-02 |
| 110 | GO:0010030: positive regulation of seed germination | 1.81E-02 |
| 111 | GO:0010073: meristem maintenance | 2.25E-02 |
| 112 | GO:0051302: regulation of cell division | 2.25E-02 |
| 113 | GO:0006730: one-carbon metabolic process | 2.57E-02 |
| 114 | GO:0016226: iron-sulfur cluster assembly | 2.57E-02 |
| 115 | GO:0009693: ethylene biosynthetic process | 2.73E-02 |
| 116 | GO:0016569: covalent chromatin modification | 2.90E-02 |
| 117 | GO:0009561: megagametogenesis | 2.90E-02 |
| 118 | GO:0010501: RNA secondary structure unwinding | 3.25E-02 |
| 119 | GO:0000413: protein peptidyl-prolyl isomerization | 3.25E-02 |
| 120 | GO:0010305: leaf vascular tissue pattern formation | 3.42E-02 |
| 121 | GO:0009960: endosperm development | 3.42E-02 |
| 122 | GO:0000398: mRNA splicing, via spliceosome | 3.55E-02 |
| 123 | GO:0080156: mitochondrial mRNA modification | 3.98E-02 |
| 124 | GO:0016032: viral process | 4.17E-02 |
| 125 | GO:0032502: developmental process | 4.17E-02 |
| 126 | GO:0071281: cellular response to iron ion | 4.36E-02 |
| 127 | GO:0009790: embryo development | 4.49E-02 |
| 128 | GO:0009567: double fertilization forming a zygote and endosperm | 4.56E-02 |
| 129 | GO:0009651: response to salt stress | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034513: box H/ACA snoRNA binding | 0.00E+00 |
| 2 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 3 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 4 | GO:0050355: triphosphatase activity | 0.00E+00 |
| 5 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 6 | GO:0003735: structural constituent of ribosome | 3.35E-98 |
| 7 | GO:0003729: mRNA binding | 1.55E-18 |
| 8 | GO:0019843: rRNA binding | 1.36E-12 |
| 9 | GO:0003723: RNA binding | 4.77E-12 |
| 10 | GO:0030515: snoRNA binding | 7.73E-10 |
| 11 | GO:0003746: translation elongation factor activity | 2.46E-09 |
| 12 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 7.63E-07 |
| 13 | GO:0003743: translation initiation factor activity | 1.81E-05 |
| 14 | GO:0008649: rRNA methyltransferase activity | 2.39E-05 |
| 15 | GO:0001055: RNA polymerase II activity | 3.99E-05 |
| 16 | GO:0044183: protein binding involved in protein folding | 6.53E-05 |
| 17 | GO:0004407: histone deacetylase activity | 1.92E-04 |
| 18 | GO:0000166: nucleotide binding | 2.16E-04 |
| 19 | GO:0008026: ATP-dependent helicase activity | 2.24E-04 |
| 20 | GO:0004001: adenosine kinase activity | 3.92E-04 |
| 21 | GO:0008746: NAD(P)+ transhydrogenase activity | 3.92E-04 |
| 22 | GO:0004128: cytochrome-b5 reductase activity, acting on NAD(P)H | 3.92E-04 |
| 23 | GO:0042134: rRNA primary transcript binding | 3.92E-04 |
| 24 | GO:0008840: 4-hydroxy-tetrahydrodipicolinate synthase | 3.92E-04 |
| 25 | GO:0030371: translation repressor activity | 3.92E-04 |
| 26 | GO:0043022: ribosome binding | 4.48E-04 |
| 27 | GO:0005078: MAP-kinase scaffold activity | 8.49E-04 |
| 28 | GO:0043141: ATP-dependent 5'-3' DNA helicase activity | 8.49E-04 |
| 29 | GO:0036455: iron-sulfur transferase activity | 8.49E-04 |
| 30 | GO:0043021: ribonucleoprotein complex binding | 8.49E-04 |
| 31 | GO:0070034: telomerase RNA binding | 8.49E-04 |
| 32 | GO:0001054: RNA polymerase I activity | 1.04E-03 |
| 33 | GO:0051082: unfolded protein binding | 1.16E-03 |
| 34 | GO:0001056: RNA polymerase III activity | 1.19E-03 |
| 35 | GO:0070181: small ribosomal subunit rRNA binding | 1.38E-03 |
| 36 | GO:0004478: methionine adenosyltransferase activity | 1.38E-03 |
| 37 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 1.38E-03 |
| 38 | GO:0043023: ribosomal large subunit binding | 1.99E-03 |
| 39 | GO:0008097: 5S rRNA binding | 1.99E-03 |
| 40 | GO:0008198: ferrous iron binding | 3.42E-03 |
| 41 | GO:0004040: amidase activity | 3.42E-03 |
| 42 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.90E-03 |
| 43 | GO:0016615: malate dehydrogenase activity | 4.23E-03 |
| 44 | GO:0030060: L-malate dehydrogenase activity | 5.09E-03 |
| 45 | GO:0004656: procollagen-proline 4-dioxygenase activity | 5.09E-03 |
| 46 | GO:0008235: metalloexopeptidase activity | 6.02E-03 |
| 47 | GO:0015288: porin activity | 7.00E-03 |
| 48 | GO:0008135: translation factor activity, RNA binding | 8.03E-03 |
| 49 | GO:0008308: voltage-gated anion channel activity | 8.03E-03 |
| 50 | GO:0004004: ATP-dependent RNA helicase activity | 8.80E-03 |
| 51 | GO:0003678: DNA helicase activity | 9.12E-03 |
| 52 | GO:0050897: cobalt ion binding | 1.13E-02 |
| 53 | GO:0003924: GTPase activity | 1.30E-02 |
| 54 | GO:0000049: tRNA binding | 1.40E-02 |
| 55 | GO:0042393: histone binding | 1.42E-02 |
| 56 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.42E-02 |
| 57 | GO:0015266: protein channel activity | 1.53E-02 |
| 58 | GO:0009982: pseudouridine synthase activity | 1.53E-02 |
| 59 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.73E-02 |
| 60 | GO:0005507: copper ion binding | 1.76E-02 |
| 61 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.87E-02 |
| 62 | GO:0031418: L-ascorbic acid binding | 2.10E-02 |
| 63 | GO:0005528: FK506 binding | 2.10E-02 |
| 64 | GO:0051087: chaperone binding | 2.25E-02 |
| 65 | GO:0008536: Ran GTPase binding | 3.42E-02 |
| 66 | GO:0008080: N-acetyltransferase activity | 3.42E-02 |
| 67 | GO:0010181: FMN binding | 3.61E-02 |
| 68 | GO:0008565: protein transporter activity | 4.60E-02 |
| 69 | GO:0008483: transaminase activity | 4.76E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 2 | GO:0072589: box H/ACA scaRNP complex | 0.00E+00 |
| 3 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 4 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 5 | GO:0090661: box H/ACA telomerase RNP complex | 0.00E+00 |
| 6 | GO:0005840: ribosome | 3.02E-60 |
| 7 | GO:0022625: cytosolic large ribosomal subunit | 1.33E-55 |
| 8 | GO:0022626: cytosolic ribosome | 4.60E-54 |
| 9 | GO:0005730: nucleolus | 3.67E-53 |
| 10 | GO:0022627: cytosolic small ribosomal subunit | 2.63E-46 |
| 11 | GO:0005829: cytosol | 8.96E-26 |
| 12 | GO:0009506: plasmodesma | 4.67E-18 |
| 13 | GO:0005737: cytoplasm | 4.24E-15 |
| 14 | GO:0032040: small-subunit processome | 5.04E-12 |
| 15 | GO:0015934: large ribosomal subunit | 4.85E-11 |
| 16 | GO:0015935: small ribosomal subunit | 1.43E-10 |
| 17 | GO:0005773: vacuole | 4.72E-09 |
| 18 | GO:0005774: vacuolar membrane | 2.80E-08 |
| 19 | GO:0005618: cell wall | 7.88E-08 |
| 20 | GO:0015030: Cajal body | 8.42E-07 |
| 21 | GO:0031428: box C/D snoRNP complex | 3.73E-06 |
| 22 | GO:0005758: mitochondrial intermembrane space | 9.16E-06 |
| 23 | GO:0030687: preribosome, large subunit precursor | 1.02E-05 |
| 24 | GO:0016020: membrane | 3.17E-05 |
| 25 | GO:0000418: DNA-directed RNA polymerase IV complex | 5.16E-05 |
| 26 | GO:0031429: box H/ACA snoRNP complex | 5.22E-05 |
| 27 | GO:0005665: DNA-directed RNA polymerase II, core complex | 8.11E-05 |
| 28 | GO:0005743: mitochondrial inner membrane | 1.80E-04 |
| 29 | GO:0030686: 90S preribosome | 3.92E-04 |
| 30 | GO:0005759: mitochondrial matrix | 4.71E-04 |
| 31 | GO:0005742: mitochondrial outer membrane translocase complex | 5.48E-04 |
| 32 | GO:0005736: DNA-directed RNA polymerase I complex | 6.57E-04 |
| 33 | GO:0005666: DNA-directed RNA polymerase III complex | 7.75E-04 |
| 34 | GO:0070545: PeBoW complex | 8.49E-04 |
| 35 | GO:0005747: mitochondrial respiratory chain complex I | 9.18E-04 |
| 36 | GO:0005834: heterotrimeric G-protein complex | 9.62E-04 |
| 37 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.04E-03 |
| 38 | GO:0019013: viral nucleocapsid | 1.34E-03 |
| 39 | GO:0005853: eukaryotic translation elongation factor 1 complex | 1.38E-03 |
| 40 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.41E-03 |
| 41 | GO:0000419: DNA-directed RNA polymerase V complex | 1.89E-03 |
| 42 | GO:0009507: chloroplast | 1.94E-03 |
| 43 | GO:0005741: mitochondrial outer membrane | 2.54E-03 |
| 44 | GO:0016363: nuclear matrix | 5.09E-03 |
| 45 | GO:0016272: prefoldin complex | 5.09E-03 |
| 46 | GO:0031597: cytosolic proteasome complex | 5.09E-03 |
| 47 | GO:0031359: integral component of chloroplast outer membrane | 6.02E-03 |
| 48 | GO:0005732: small nucleolar ribonucleoprotein complex | 6.83E-03 |
| 49 | GO:0034399: nuclear periphery | 7.00E-03 |
| 50 | GO:0005688: U6 snRNP | 7.00E-03 |
| 51 | GO:0030529: intracellular ribonucleoprotein complex | 7.46E-03 |
| 52 | GO:0046930: pore complex | 8.03E-03 |
| 53 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 8.03E-03 |
| 54 | GO:0008180: COP9 signalosome | 9.12E-03 |
| 55 | GO:0005763: mitochondrial small ribosomal subunit | 9.12E-03 |
| 56 | GO:0005739: mitochondrion | 1.53E-02 |
| 57 | GO:0005635: nuclear envelope | 2.32E-02 |
| 58 | GO:0009532: plastid stroma | 2.41E-02 |
| 59 | GO:0005886: plasma membrane | 2.42E-02 |
| 60 | GO:0005622: intracellular | 2.56E-02 |
| 61 | GO:0005681: spliceosomal complex | 2.56E-02 |
| 62 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 2.90E-02 |
| 63 | GO:0005654: nucleoplasm | 3.75E-02 |
| 64 | GO:0016592: mediator complex | 4.17E-02 |
| 65 | GO:0010319: stromule | 4.76E-02 |