co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G44670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009236: cobalamin biosynthetic process	0.00E+00
2	GO:0001881: receptor recycling	0.00E+00
3	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
4	GO:0006412: translation	2.57E-41
5	GO:0042254: ribosome biogenesis	1.45E-14
6	GO:0000027: ribosomal large subunit assembly	6.29E-08
7	GO:0000028: ribosomal small subunit assembly	6.75E-06
8	GO:2001006: regulation of cellulose biosynthetic process	2.82E-04
9	GO:0019354: siroheme biosynthetic process	2.82E-04
10	GO:0009245: lipid A biosynthetic process	4.10E-04
11	GO:0045905: positive regulation of translational termination	6.19E-04
12	GO:0071668: plant-type cell wall assembly	6.19E-04
13	GO:0034243: regulation of transcription elongation from RNA polymerase II promoter	6.19E-04
14	GO:0045901: positive regulation of translational elongation	6.19E-04
15	GO:0006452: translational frameshifting	6.19E-04
16	GO:0006432: phenylalanyl-tRNA aminoacylation	6.19E-04
17	GO:0046417: chorismate metabolic process	1.00E-03
18	GO:0045793: positive regulation of cell size	1.00E-03
19	GO:0034227: tRNA thio-modification	1.00E-03
20	GO:0032786: positive regulation of DNA-templated transcription, elongation	1.00E-03
21	GO:0008333: endosome to lysosome transport	1.00E-03
22	GO:1902626: assembly of large subunit precursor of preribosome	1.00E-03
23	GO:0045454: cell redox homeostasis	1.03E-03
24	GO:0006289: nucleotide-excision repair	1.30E-03
25	GO:0032877: positive regulation of DNA endoreduplication	1.44E-03
26	GO:0006166: purine ribonucleoside salvage	1.44E-03
27	GO:0070301: cellular response to hydrogen peroxide	1.44E-03
28	GO:0006107: oxaloacetate metabolic process	1.44E-03
29	GO:0006241: CTP biosynthetic process	1.44E-03
30	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.44E-03
31	GO:0006165: nucleoside diphosphate phosphorylation	1.44E-03
32	GO:0006228: UTP biosynthetic process	1.44E-03
33	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.44E-03
34	GO:0006168: adenine salvage	1.44E-03
35	GO:0016226: iron-sulfur cluster assembly	1.72E-03
36	GO:0051781: positive regulation of cell division	1.92E-03
37	GO:0006183: GTP biosynthetic process	1.92E-03
38	GO:0000413: protein peptidyl-prolyl isomerization	2.39E-03
39	GO:0044209: AMP salvage	2.46E-03
40	GO:0006796: phosphate-containing compound metabolic process	3.03E-03
41	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.65E-03
42	GO:1900056: negative regulation of leaf senescence	4.30E-03
43	GO:0009231: riboflavin biosynthetic process	4.99E-03
44	GO:0009850: auxin metabolic process	4.99E-03
45	GO:0009690: cytokinin metabolic process	4.99E-03
46	GO:0009808: lignin metabolic process	5.72E-03
47	GO:0048589: developmental growth	6.48E-03
48	GO:0009651: response to salt stress	6.90E-03
49	GO:0000387: spliceosomal snRNP assembly	7.28E-03
50	GO:0009853: photorespiration	7.59E-03
51	GO:0006325: chromatin organization	8.11E-03
52	GO:0072593: reactive oxygen species metabolic process	8.97E-03
53	GO:0009073: aromatic amino acid family biosynthetic process	8.97E-03
54	GO:0009926: auxin polar transport	9.80E-03
55	GO:0016925: protein sumoylation	9.88E-03
56	GO:0008361: regulation of cell size	9.88E-03
57	GO:0046686: response to cadmium ion	1.03E-02
58	GO:0009644: response to high light intensity	1.06E-02
59	GO:0006108: malate metabolic process	1.08E-02
60	GO:0010102: lateral root morphogenesis	1.08E-02
61	GO:0006807: nitrogen compound metabolic process	1.08E-02
62	GO:0006626: protein targeting to mitochondrion	1.08E-02
63	GO:0009965: leaf morphogenesis	1.10E-02
64	GO:0010020: chloroplast fission	1.18E-02
65	GO:0007034: vacuolar transport	1.18E-02
66	GO:0010039: response to iron ion	1.28E-02
67	GO:0009735: response to cytokinin	1.29E-02
68	GO:0006071: glycerol metabolic process	1.38E-02
69	GO:0034976: response to endoplasmic reticulum stress	1.38E-02
70	GO:0009116: nucleoside metabolic process	1.48E-02
71	GO:0015992: proton transport	1.70E-02
72	GO:0061077: chaperone-mediated protein folding	1.70E-02
73	GO:0016569: covalent chromatin modification	1.78E-02
74	GO:0007005: mitochondrion organization	1.81E-02
75	GO:0010089: xylem development	2.05E-02
76	GO:0045492: xylan biosynthetic process	2.05E-02
77	GO:0042147: retrograde transport, endosome to Golgi	2.17E-02
78	GO:0000398: mRNA splicing, via spliceosome	2.18E-02
79	GO:0009793: embryo development ending in seed dormancy	2.20E-02
80	GO:0015991: ATP hydrolysis coupled proton transport	2.29E-02
81	GO:0006662: glycerol ether metabolic process	2.42E-02
82	GO:0006623: protein targeting to vacuole	2.67E-02
83	GO:0006414: translational elongation	2.68E-02
84	GO:0080156: mitochondrial mRNA modification	2.81E-02
85	GO:0006633: fatty acid biosynthetic process	2.97E-02
86	GO:0010090: trichome morphogenesis	3.08E-02
87	GO:0010286: heat acclimation	3.36E-02
88	GO:0010228: vegetative to reproductive phase transition of meristem	3.42E-02
89	GO:0000910: cytokinesis	3.50E-02
90	GO:0006974: cellular response to DNA damage stimulus	3.95E-02
91	GO:0006979: response to oxidative stress	4.22E-02
92	GO:0008219: cell death	4.41E-02
93	GO:0009826: unidimensional cell growth	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0016852: sirohydrochlorin cobaltochelatase activity	0.00E+00
2	GO:0050152: omega-amidase activity	0.00E+00
3	GO:0051266: sirohydrochlorin ferrochelatase activity	0.00E+00
4	GO:0004746: riboflavin synthase activity	0.00E+00
5	GO:0003735: structural constituent of ribosome	4.89E-51
6	GO:0003729: mRNA binding	4.43E-13
7	GO:0019843: rRNA binding	1.18E-04
8	GO:0031177: phosphopantetheine binding	1.22E-04
9	GO:0000035: acyl binding	1.67E-04
10	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.76E-04
11	GO:0010179: IAA-Ala conjugate hydrolase activity	2.82E-04
12	GO:0004826: phenylalanine-tRNA ligase activity	6.19E-04
13	GO:0018708: thiol S-methyltransferase activity	6.19E-04
14	GO:0004106: chorismate mutase activity	6.19E-04
15	GO:0004751: ribose-5-phosphate isomerase activity	1.00E-03
16	GO:0052692: raffinose alpha-galactosidase activity	1.00E-03
17	GO:0008430: selenium binding	1.00E-03
18	GO:0004557: alpha-galactosidase activity	1.00E-03
19	GO:0003746: translation elongation factor activity	1.05E-03
20	GO:0004550: nucleoside diphosphate kinase activity	1.44E-03
21	GO:0008097: 5S rRNA binding	1.44E-03
22	GO:0003999: adenine phosphoribosyltransferase activity	1.44E-03
23	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.44E-03
24	GO:0003723: RNA binding	1.68E-03
25	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.75E-03
26	GO:0010011: auxin binding	1.92E-03
27	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.92E-03
28	GO:0000993: RNA polymerase II core binding	1.92E-03
29	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.92E-03
30	GO:0070628: proteasome binding	1.92E-03
31	GO:0031386: protein tag	2.46E-03
32	GO:0004040: amidase activity	2.46E-03
33	GO:0031593: polyubiquitin binding	3.03E-03
34	GO:0016462: pyrophosphatase activity	3.03E-03
35	GO:0015035: protein disulfide oxidoreductase activity	3.42E-03
36	GO:0051920: peroxiredoxin activity	3.65E-03
37	GO:0042162: telomeric DNA binding	4.30E-03
38	GO:0004427: inorganic diphosphatase activity	4.30E-03
39	GO:0016209: antioxidant activity	4.99E-03
40	GO:0035064: methylated histone binding	4.99E-03
41	GO:0043022: ribosome binding	4.99E-03
42	GO:0008889: glycerophosphodiester phosphodiesterase activity	6.48E-03
43	GO:0001055: RNA polymerase II activity	7.28E-03
44	GO:0003697: single-stranded DNA binding	7.59E-03
45	GO:0003993: acid phosphatase activity	7.94E-03
46	GO:0008047: enzyme activator activity	8.11E-03
47	GO:0001054: RNA polymerase I activity	8.97E-03
48	GO:0008794: arsenate reductase (glutaredoxin) activity	8.97E-03
49	GO:0001056: RNA polymerase III activity	9.88E-03
50	GO:0000049: tRNA binding	9.88E-03
51	GO:0004089: carbonate dehydratase activity	1.08E-02
52	GO:0051536: iron-sulfur cluster binding	1.48E-02
53	GO:0043130: ubiquitin binding	1.48E-02
54	GO:0005528: FK506 binding	1.48E-02
55	GO:0004298: threonine-type endopeptidase activity	1.70E-02
56	GO:0003727: single-stranded RNA binding	2.05E-02
57	GO:0008514: organic anion transmembrane transporter activity	2.05E-02
58	GO:0003756: protein disulfide isomerase activity	2.05E-02
59	GO:0004722: protein serine/threonine phosphatase activity	2.14E-02
60	GO:0047134: protein-disulfide reductase activity	2.17E-02
61	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.42E-02
62	GO:0004791: thioredoxin-disulfide reductase activity	2.54E-02
63	GO:0004872: receptor activity	2.67E-02
64	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.81E-02
65	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.08E-02
66	GO:0003684: damaged DNA binding	3.22E-02
67	GO:0008237: metallopeptidase activity	3.36E-02
68	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.41E-02
69	GO:0008168: methyltransferase activity	4.84E-02
70	GO:0050897: cobalt ion binding	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
2	GO:0005675: holo TFIIH complex	0.00E+00
3	GO:0097361: CIA complex	0.00E+00
4	GO:0022626: cytosolic ribosome	6.27E-40
5	GO:0005840: ribosome	4.16E-34
6	GO:0022625: cytosolic large ribosomal subunit	1.22E-30
7	GO:0022627: cytosolic small ribosomal subunit	8.14E-23
8	GO:0005829: cytosol	5.87E-16
9	GO:0005737: cytoplasm	1.90E-10
10	GO:0005730: nucleolus	1.35E-09
11	GO:0015934: large ribosomal subunit	2.71E-07
12	GO:0009506: plasmodesma	2.93E-06
13	GO:0005774: vacuolar membrane	5.98E-06
14	GO:0005732: small nucleolar ribonucleoprotein complex	8.77E-05
15	GO:0016020: membrane	1.44E-04
16	GO:0005773: vacuole	1.74E-04
17	GO:0005618: cell wall	1.84E-04
18	GO:0032044: DSIF complex	2.82E-04
19	GO:0005788: endoplasmic reticulum lumen	6.00E-04
20	GO:0005697: telomerase holoenzyme complex	6.19E-04
21	GO:0005853: eukaryotic translation elongation factor 1 complex	1.00E-03
22	GO:0000439: core TFIIH complex	1.00E-03
23	GO:0005758: mitochondrial intermembrane space	1.30E-03
24	GO:0045271: respiratory chain complex I	1.44E-03
25	GO:0070469: respiratory chain	1.44E-03
26	GO:1990726: Lsm1-7-Pat1 complex	1.44E-03
27	GO:0015935: small ribosomal subunit	1.58E-03
28	GO:0016471: vacuolar proton-transporting V-type ATPase complex	1.92E-03
29	GO:0005747: mitochondrial respiratory chain complex I	2.71E-03
30	GO:0005771: multivesicular body	3.03E-03
31	GO:0030904: retromer complex	3.03E-03
32	GO:0045273: respiratory chain complex II	4.99E-03
33	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	4.99E-03
34	GO:0005688: U6 snRNP	4.99E-03
35	GO:0046540: U4/U6 x U5 tri-snRNP complex	5.72E-03
36	GO:0005759: mitochondrial matrix	5.86E-03
37	GO:0005763: mitochondrial small ribosomal subunit	6.48E-03
38	GO:0005736: DNA-directed RNA polymerase I complex	6.48E-03
39	GO:0031090: organelle membrane	6.48E-03
40	GO:0005783: endoplasmic reticulum	6.99E-03
41	GO:0005666: DNA-directed RNA polymerase III complex	7.28E-03
42	GO:0071011: precatalytic spliceosome	7.28E-03
43	GO:0000418: DNA-directed RNA polymerase IV complex	8.11E-03
44	GO:0071013: catalytic step 2 spliceosome	8.97E-03
45	GO:0048471: perinuclear region of cytoplasm	8.97E-03
46	GO:0009507: chloroplast	9.00E-03
47	GO:0005665: DNA-directed RNA polymerase II, core complex	9.88E-03
48	GO:0019013: viral nucleocapsid	1.08E-02
49	GO:0009508: plastid chromosome	1.08E-02
50	GO:0005750: mitochondrial respiratory chain complex III	1.18E-02
51	GO:0031966: mitochondrial membrane	1.23E-02
52	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.28E-02
53	GO:0000502: proteasome complex	1.32E-02
54	GO:0000419: DNA-directed RNA polymerase V complex	1.38E-02
55	GO:0005839: proteasome core complex	1.70E-02
56	GO:0009295: nucleoid	3.36E-02
57	GO:0000932: P-body	3.65E-02
58	GO:0000325: plant-type vacuole	4.88E-02