co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G44620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015746: citrate transport	0.00E+00
2	GO:0009236: cobalamin biosynthetic process	0.00E+00
3	GO:0001881: receptor recycling	0.00E+00
4	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
5	GO:0015822: ornithine transport	0.00E+00
6	GO:0006412: translation	4.82E-42
7	GO:0042254: ribosome biogenesis	7.74E-19
8	GO:0006511: ubiquitin-dependent protein catabolic process	5.96E-10
9	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.18E-07
10	GO:0009853: photorespiration	2.08E-07
11	GO:0051603: proteolysis involved in cellular protein catabolic process	1.70E-06
12	GO:0000027: ribosomal large subunit assembly	1.74E-05
13	GO:0000028: ribosomal small subunit assembly	2.54E-05
14	GO:1902626: assembly of large subunit precursor of preribosome	3.47E-05
15	GO:0006165: nucleoside diphosphate phosphorylation	7.46E-05
16	GO:0006228: UTP biosynthetic process	7.46E-05
17	GO:0006241: CTP biosynthetic process	7.46E-05
18	GO:0015986: ATP synthesis coupled proton transport	8.11E-05
19	GO:0006183: GTP biosynthetic process	1.30E-04
20	GO:0046686: response to cadmium ion	3.76E-04
21	GO:0031539: positive regulation of anthocyanin metabolic process	4.81E-04
22	GO:0031468: nuclear envelope reassembly	4.81E-04
23	GO:0009852: auxin catabolic process	4.81E-04
24	GO:0000066: mitochondrial ornithine transport	4.81E-04
25	GO:2001006: regulation of cellulose biosynthetic process	4.81E-04
26	GO:0019354: siroheme biosynthetic process	4.81E-04
27	GO:0009240: isopentenyl diphosphate biosynthetic process	4.81E-04
28	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	4.86E-04
29	GO:0006099: tricarboxylic acid cycle	4.98E-04
30	GO:0015991: ATP hydrolysis coupled proton transport	6.58E-04
31	GO:0022900: electron transport chain	7.39E-04
32	GO:0009060: aerobic respiration	8.84E-04
33	GO:0098656: anion transmembrane transport	8.84E-04
34	GO:0006432: phenylalanyl-tRNA aminoacylation	1.04E-03
35	GO:0045905: positive regulation of translational termination	1.04E-03
36	GO:0071668: plant-type cell wall assembly	1.04E-03
37	GO:0050992: dimethylallyl diphosphate biosynthetic process	1.04E-03
38	GO:0045901: positive regulation of translational elongation	1.04E-03
39	GO:0006452: translational frameshifting	1.04E-03
40	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.17E-03
41	GO:0009651: response to salt stress	1.53E-03
42	GO:0006820: anion transport	1.60E-03
43	GO:0008333: endosome to lysosome transport	1.69E-03
44	GO:0080121: AMP transport	1.69E-03
45	GO:0045793: positive regulation of cell size	1.69E-03
46	GO:0006760: folic acid-containing compound metabolic process	1.69E-03
47	GO:0006108: malate metabolic process	1.82E-03
48	GO:0006006: glucose metabolic process	1.82E-03
49	GO:0007030: Golgi organization	2.30E-03
50	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.45E-03
51	GO:0009963: positive regulation of flavonoid biosynthetic process	2.45E-03
52	GO:0006168: adenine salvage	2.45E-03
53	GO:0032877: positive regulation of DNA endoreduplication	2.45E-03
54	GO:0046836: glycolipid transport	2.45E-03
55	GO:0006166: purine ribonucleoside salvage	2.45E-03
56	GO:0070301: cellular response to hydrogen peroxide	2.45E-03
57	GO:0006107: oxaloacetate metabolic process	2.45E-03
58	GO:0006487: protein N-linked glycosylation	2.85E-03
59	GO:0006221: pyrimidine nucleotide biosynthetic process	3.30E-03
60	GO:0015867: ATP transport	3.30E-03
61	GO:0032366: intracellular sterol transport	3.30E-03
62	GO:0044205: 'de novo' UMP biosynthetic process	3.30E-03
63	GO:0051781: positive regulation of cell division	3.30E-03
64	GO:0010363: regulation of plant-type hypersensitive response	3.30E-03
65	GO:0015992: proton transport	3.46E-03
66	GO:0044209: AMP salvage	4.23E-03
67	GO:0015866: ADP transport	5.24E-03
68	GO:0043248: proteasome assembly	5.24E-03
69	GO:0000413: protein peptidyl-prolyl isomerization	5.27E-03
70	GO:0006662: glycerol ether metabolic process	5.69E-03
71	GO:0000911: cytokinesis by cell plate formation	6.32E-03
72	GO:0000054: ribosomal subunit export from nucleus	6.32E-03
73	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	7.48E-03
74	GO:0022904: respiratory electron transport chain	7.48E-03
75	GO:0010044: response to aluminum ion	7.48E-03
76	GO:0032880: regulation of protein localization	7.48E-03
77	GO:0009787: regulation of abscisic acid-activated signaling pathway	8.71E-03
78	GO:0006506: GPI anchor biosynthetic process	8.71E-03
79	GO:0009690: cytokinin metabolic process	8.71E-03
80	GO:0048658: anther wall tapetum development	8.71E-03
81	GO:0009231: riboflavin biosynthetic process	8.71E-03
82	GO:0009808: lignin metabolic process	1.00E-02
83	GO:0010099: regulation of photomorphogenesis	1.00E-02
84	GO:0080144: amino acid homeostasis	1.14E-02
85	GO:0006754: ATP biosynthetic process	1.14E-02
86	GO:0048589: developmental growth	1.14E-02
87	GO:0009245: lipid A biosynthetic process	1.14E-02
88	GO:0000387: spliceosomal snRNP assembly	1.28E-02
89	GO:0009735: response to cytokinin	1.40E-02
90	GO:0000103: sulfate assimilation	1.43E-02
91	GO:0043069: negative regulation of programmed cell death	1.43E-02
92	GO:0045454: cell redox homeostasis	1.52E-02
93	GO:0010043: response to zinc ion	1.55E-02
94	GO:0052544: defense response by callose deposition in cell wall	1.58E-02
95	GO:0016925: protein sumoylation	1.74E-02
96	GO:0034599: cellular response to oxidative stress	1.78E-02
97	GO:0010102: lateral root morphogenesis	1.91E-02
98	GO:0006807: nitrogen compound metabolic process	1.91E-02
99	GO:0006626: protein targeting to mitochondrion	1.91E-02
100	GO:0006839: mitochondrial transport	1.94E-02
101	GO:0042742: defense response to bacterium	2.06E-02
102	GO:0007034: vacuolar transport	2.08E-02
103	GO:0048467: gynoecium development	2.08E-02
104	GO:0019853: L-ascorbic acid biosynthetic process	2.26E-02
105	GO:0010039: response to iron ion	2.26E-02
106	GO:0009617: response to bacterium	2.29E-02
107	GO:0042753: positive regulation of circadian rhythm	2.44E-02
108	GO:0006071: glycerol metabolic process	2.44E-02
109	GO:0009965: leaf morphogenesis	2.47E-02
110	GO:0006406: mRNA export from nucleus	2.62E-02
111	GO:0009116: nucleoside metabolic process	2.62E-02
112	GO:0008299: isoprenoid biosynthetic process	2.82E-02
113	GO:0010431: seed maturation	3.01E-02
114	GO:0061077: chaperone-mediated protein folding	3.01E-02
115	GO:0016226: iron-sulfur cluster assembly	3.21E-02
116	GO:0006414: translational elongation	3.21E-02
117	GO:0007005: mitochondrion organization	3.21E-02
118	GO:0010017: red or far-red light signaling pathway	3.21E-02
119	GO:0006012: galactose metabolic process	3.42E-02
120	GO:0010089: xylem development	3.63E-02
121	GO:0042147: retrograde transport, endosome to Golgi	3.84E-02
122	GO:0055114: oxidation-reduction process	4.02E-02
123	GO:0080022: primary root development	4.06E-02
124	GO:0034220: ion transmembrane transport	4.06E-02
125	GO:0006606: protein import into nucleus	4.06E-02
126	GO:0009958: positive gravitropism	4.28E-02
127	GO:0009793: embryo development ending in seed dormancy	4.30E-02
128	GO:0061025: membrane fusion	4.51E-02
129	GO:0006623: protein targeting to vacuole	4.74E-02
130	GO:0000398: mRNA splicing, via spliceosome	4.84E-02
131	GO:0000302: response to reactive oxygen species	4.97E-02
132	GO:0010193: response to ozone	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0050152: omega-amidase activity	0.00E+00
2	GO:0051266: sirohydrochlorin ferrochelatase activity	0.00E+00
3	GO:0004746: riboflavin synthase activity	0.00E+00
4	GO:0004151: dihydroorotase activity	0.00E+00
5	GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity	0.00E+00
6	GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity	0.00E+00
7	GO:0016852: sirohydrochlorin cobaltochelatase activity	0.00E+00
8	GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
9	GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
10	GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity	0.00E+00
11	GO:0003735: structural constituent of ribosome	3.96E-56
12	GO:0004298: threonine-type endopeptidase activity	1.45E-26
13	GO:0008233: peptidase activity	1.12E-11
14	GO:0003729: mRNA binding	4.22E-10
15	GO:0008121: ubiquinol-cytochrome-c reductase activity	2.31E-07
16	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.54E-07
17	GO:0050897: cobalt ion binding	4.49E-05
18	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	7.06E-05
19	GO:0004550: nucleoside diphosphate kinase activity	7.46E-05
20	GO:0004129: cytochrome-c oxidase activity	1.04E-04
21	GO:0004576: oligosaccharyl transferase activity	1.30E-04
22	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	2.00E-04
23	GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity	4.81E-04
24	GO:0080047: GDP-L-galactose phosphorylase activity	4.81E-04
25	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	4.81E-04
26	GO:0080048: GDP-D-glucose phosphorylase activity	4.81E-04
27	GO:0015137: citrate transmembrane transporter activity	4.81E-04
28	GO:0015288: porin activity	6.06E-04
29	GO:0008308: voltage-gated anion channel activity	7.39E-04
30	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.71E-04
31	GO:0000064: L-ornithine transmembrane transporter activity	1.04E-03
32	GO:0004826: phenylalanine-tRNA ligase activity	1.04E-03
33	GO:1990585: hydroxyproline O-arabinosyltransferase activity	1.04E-03
34	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.40E-03
35	GO:0070181: small ribosomal subunit rRNA binding	1.69E-03
36	GO:0005047: signal recognition particle binding	1.69E-03
37	GO:0003999: adenine phosphoribosyltransferase activity	2.45E-03
38	GO:0008097: 5S rRNA binding	2.45E-03
39	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	2.45E-03
40	GO:0017089: glycolipid transporter activity	2.45E-03
41	GO:0019843: rRNA binding	2.61E-03
42	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.30E-03
43	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	3.30E-03
44	GO:0050302: indole-3-acetaldehyde oxidase activity	3.30E-03
45	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	3.30E-03
46	GO:0010011: auxin binding	3.30E-03
47	GO:0051861: glycolipid binding	3.30E-03
48	GO:0051539: 4 iron, 4 sulfur cluster binding	3.38E-03
49	GO:0004540: ribonuclease activity	3.46E-03
50	GO:0080122: AMP transmembrane transporter activity	4.23E-03
51	GO:0016651: oxidoreductase activity, acting on NAD(P)H	4.23E-03
52	GO:0005496: steroid binding	4.23E-03
53	GO:0031386: protein tag	4.23E-03
54	GO:0047134: protein-disulfide reductase activity	4.88E-03
55	GO:0031177: phosphopantetheine binding	5.24E-03
56	GO:0051117: ATPase binding	5.24E-03
57	GO:0016615: malate dehydrogenase activity	5.24E-03
58	GO:0080046: quercetin 4'-O-glucosyltransferase activity	5.24E-03
59	GO:0004791: thioredoxin-disulfide reductase activity	6.12E-03
60	GO:0030060: L-malate dehydrogenase activity	6.32E-03
61	GO:0000035: acyl binding	6.32E-03
62	GO:0004602: glutathione peroxidase activity	6.32E-03
63	GO:0005347: ATP transmembrane transporter activity	6.32E-03
64	GO:0015217: ADP transmembrane transporter activity	6.32E-03
65	GO:0051920: peroxiredoxin activity	6.32E-03
66	GO:0008143: poly(A) binding	7.48E-03
67	GO:0008320: protein transmembrane transporter activity	7.48E-03
68	GO:0005085: guanyl-nucleotide exchange factor activity	7.48E-03
69	GO:0042162: telomeric DNA binding	7.48E-03
70	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.02E-03
71	GO:0043022: ribosome binding	8.71E-03
72	GO:0016209: antioxidant activity	8.71E-03
73	GO:0035064: methylated histone binding	8.71E-03
74	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	8.71E-03
75	GO:0004034: aldose 1-epimerase activity	8.71E-03
76	GO:0015035: protein disulfide oxidoreductase activity	9.45E-03
77	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.14E-02
78	GO:0001055: RNA polymerase II activity	1.28E-02
79	GO:0047617: acyl-CoA hydrolase activity	1.28E-02
80	GO:0008794: arsenate reductase (glutaredoxin) activity	1.58E-02
81	GO:0001054: RNA polymerase I activity	1.58E-02
82	GO:0003746: translation elongation factor activity	1.70E-02
83	GO:0000049: tRNA binding	1.74E-02
84	GO:0001056: RNA polymerase III activity	1.74E-02
85	GO:0004089: carbonate dehydratase activity	1.91E-02
86	GO:0008266: poly(U) RNA binding	2.08E-02
87	GO:0004175: endopeptidase activity	2.08E-02
88	GO:0051537: 2 iron, 2 sulfur cluster binding	2.37E-02
89	GO:0051536: iron-sulfur cluster binding	2.62E-02
90	GO:0043130: ubiquitin binding	2.62E-02
91	GO:0005528: FK506 binding	2.62E-02
92	GO:0005507: copper ion binding	2.98E-02
93	GO:0004601: peroxidase activity	3.16E-02
94	GO:0016788: hydrolase activity, acting on ester bonds	3.24E-02
95	GO:0004872: receptor activity	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0097361: CIA complex	0.00E+00
2	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
3	GO:0005840: ribosome	5.51E-46
4	GO:0022626: cytosolic ribosome	5.15E-43
5	GO:0022625: cytosolic large ribosomal subunit	1.16E-35
6	GO:0005839: proteasome core complex	1.45E-26
7	GO:0000502: proteasome complex	5.20E-23
8	GO:0022627: cytosolic small ribosomal subunit	5.03E-21
9	GO:0005829: cytosol	9.10E-20
10	GO:0005747: mitochondrial respiratory chain complex I	6.80E-19
11	GO:0005774: vacuolar membrane	2.37E-16
12	GO:0005730: nucleolus	2.99E-15
13	GO:0019773: proteasome core complex, alpha-subunit complex	3.43E-13
14	GO:0005753: mitochondrial proton-transporting ATP synthase complex	9.49E-13
15	GO:0005737: cytoplasm	2.94E-11
16	GO:0005750: mitochondrial respiratory chain complex III	4.84E-11
17	GO:0045271: respiratory chain complex I	3.00E-10
18	GO:0005773: vacuole	2.88E-09
19	GO:0016020: membrane	8.99E-08
20	GO:0031966: mitochondrial membrane	1.18E-06
21	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.51E-06
22	GO:0005758: mitochondrial intermembrane space	1.74E-05
23	GO:0045273: respiratory chain complex II	2.54E-05
24	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	2.54E-05
25	GO:0009536: plastid	4.40E-05
26	GO:0005739: mitochondrion	6.19E-05
27	GO:0008250: oligosaccharyltransferase complex	2.00E-04
28	GO:0005746: mitochondrial respiratory chain	2.00E-04
29	GO:0009506: plasmodesma	4.02E-04
30	GO:0005732: small nucleolar ribonucleoprotein complex	4.24E-04
31	GO:0019774: proteasome core complex, beta-subunit complex	4.81E-04
32	GO:0046930: pore complex	7.39E-04
33	GO:0005697: telomerase holoenzyme complex	1.04E-03
34	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	1.04E-03
35	GO:0005618: cell wall	1.08E-03
36	GO:0005853: eukaryotic translation elongation factor 1 complex	1.69E-03
37	GO:0009507: chloroplast	1.82E-03
38	GO:0033180: proton-transporting V-type ATPase, V1 domain	2.45E-03
39	GO:1990726: Lsm1-7-Pat1 complex	2.45E-03
40	GO:0015934: large ribosomal subunit	2.54E-03
41	GO:0005783: endoplasmic reticulum	3.16E-03
42	GO:0016471: vacuolar proton-transporting V-type ATPase complex	3.30E-03
43	GO:0015935: small ribosomal subunit	3.46E-03
44	GO:0005741: mitochondrial outer membrane	3.46E-03
45	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	5.24E-03
46	GO:0005771: multivesicular body	5.24E-03
47	GO:0030904: retromer complex	5.24E-03
48	GO:0005801: cis-Golgi network	6.32E-03
49	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	7.48E-03
50	GO:0005688: U6 snRNP	8.71E-03
51	GO:0046540: U4/U6 x U5 tri-snRNP complex	1.00E-02
52	GO:0005788: endoplasmic reticulum lumen	1.08E-02
53	GO:0005763: mitochondrial small ribosomal subunit	1.14E-02
54	GO:0005736: DNA-directed RNA polymerase I complex	1.14E-02
55	GO:0005666: DNA-directed RNA polymerase III complex	1.28E-02
56	GO:0071011: precatalytic spliceosome	1.28E-02
57	GO:0005740: mitochondrial envelope	1.43E-02
58	GO:0000325: plant-type vacuole	1.55E-02
59	GO:0008541: proteasome regulatory particle, lid subcomplex	1.58E-02
60	GO:0071013: catalytic step 2 spliceosome	1.58E-02
61	GO:0005759: mitochondrial matrix	1.62E-02
62	GO:0005665: DNA-directed RNA polymerase II, core complex	1.74E-02
63	GO:0005743: mitochondrial inner membrane	1.86E-02
64	GO:0019013: viral nucleocapsid	1.91E-02
65	GO:0009508: plastid chromosome	1.91E-02
66	GO:0005886: plasma membrane	2.43E-02
67	GO:0000419: DNA-directed RNA polymerase V complex	2.44E-02
68	GO:0070469: respiratory chain	2.82E-02