co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G44230

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
2	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0030155: regulation of cell adhesion	0.00E+00
5	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
6	GO:0015979: photosynthesis	5.73E-09
7	GO:0009773: photosynthetic electron transport in photosystem I	7.66E-06
8	GO:0005983: starch catabolic process	9.76E-06
9	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.03E-05
10	GO:0032544: plastid translation	1.42E-04
11	GO:0080093: regulation of photorespiration	1.56E-04
12	GO:0031998: regulation of fatty acid beta-oxidation	1.56E-04
13	GO:0000023: maltose metabolic process	1.56E-04
14	GO:0000025: maltose catabolic process	1.56E-04
15	GO:0015995: chlorophyll biosynthetic process	2.31E-04
16	GO:0005976: polysaccharide metabolic process	3.55E-04
17	GO:0018026: peptidyl-lysine monomethylation	3.55E-04
18	GO:0031648: protein destabilization	3.55E-04
19	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.55E-04
20	GO:0048281: inflorescence morphogenesis	5.82E-04
21	GO:0006000: fructose metabolic process	5.82E-04
22	GO:0009405: pathogenesis	5.82E-04
23	GO:0009768: photosynthesis, light harvesting in photosystem I	6.43E-04
24	GO:0061077: chaperone-mediated protein folding	7.05E-04
25	GO:0009735: response to cytokinin	7.84E-04
26	GO:0010148: transpiration	8.33E-04
27	GO:0010021: amylopectin biosynthetic process	1.10E-03
28	GO:0006808: regulation of nitrogen utilization	1.10E-03
29	GO:0009765: photosynthesis, light harvesting	1.10E-03
30	GO:0010600: regulation of auxin biosynthetic process	1.10E-03
31	GO:0006097: glyoxylate cycle	1.40E-03
32	GO:0006810: transport	1.71E-03
33	GO:0009635: response to herbicide	1.72E-03
34	GO:0042549: photosystem II stabilization	1.72E-03
35	GO:0010027: thylakoid membrane organization	1.99E-03
36	GO:0006458: 'de novo' protein folding	2.06E-03
37	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.06E-03
38	GO:0042026: protein refolding	2.06E-03
39	GO:0009769: photosynthesis, light harvesting in photosystem II	2.42E-03
40	GO:0070370: cellular heat acclimation	2.42E-03
41	GO:0009645: response to low light intensity stimulus	2.42E-03
42	GO:0010103: stomatal complex morphogenesis	2.42E-03
43	GO:0010161: red light signaling pathway	2.42E-03
44	GO:0018298: protein-chromophore linkage	2.59E-03
45	GO:0006353: DNA-templated transcription, termination	2.80E-03
46	GO:0030091: protein repair	2.80E-03
47	GO:0009704: de-etiolation	2.80E-03
48	GO:0010928: regulation of auxin mediated signaling pathway	2.80E-03
49	GO:0005978: glycogen biosynthetic process	2.80E-03
50	GO:0009631: cold acclimation	2.99E-03
51	GO:0001558: regulation of cell growth	3.21E-03
52	GO:0006002: fructose 6-phosphate metabolic process	3.21E-03
53	GO:0055114: oxidation-reduction process	3.43E-03
54	GO:0051865: protein autoubiquitination	3.63E-03
55	GO:0010206: photosystem II repair	3.63E-03
56	GO:0009658: chloroplast organization	3.92E-03
57	GO:0042254: ribosome biogenesis	4.02E-03
58	GO:0005982: starch metabolic process	4.06E-03
59	GO:0006779: porphyrin-containing compound biosynthetic process	4.06E-03
60	GO:0043069: negative regulation of programmed cell death	4.52E-03
61	GO:0048829: root cap development	4.52E-03
62	GO:0031627: telomeric loop formation	4.52E-03
63	GO:0006782: protoporphyrinogen IX biosynthetic process	4.52E-03
64	GO:0009644: response to high light intensity	4.55E-03
65	GO:0006415: translational termination	4.99E-03
66	GO:0009073: aromatic amino acid family biosynthetic process	4.99E-03
67	GO:0009750: response to fructose	4.99E-03
68	GO:0010628: positive regulation of gene expression	5.98E-03
69	GO:0006108: malate metabolic process	5.98E-03
70	GO:0018107: peptidyl-threonine phosphorylation	5.98E-03
71	GO:0006094: gluconeogenesis	5.98E-03
72	GO:0005986: sucrose biosynthetic process	5.98E-03
73	GO:0009266: response to temperature stimulus	6.50E-03
74	GO:0006302: double-strand break repair	6.50E-03
75	GO:0006412: translation	7.35E-03
76	GO:0006636: unsaturated fatty acid biosynthetic process	7.59E-03
77	GO:0009944: polarity specification of adaxial/abaxial axis	8.16E-03
78	GO:0007017: microtubule-based process	8.74E-03
79	GO:0051302: regulation of cell division	8.74E-03
80	GO:0051321: meiotic cell cycle	9.34E-03
81	GO:0019915: lipid storage	9.34E-03
82	GO:0035428: hexose transmembrane transport	9.96E-03
83	GO:2000022: regulation of jasmonic acid mediated signaling pathway	9.96E-03
84	GO:0010017: red or far-red light signaling pathway	9.96E-03
85	GO:0009686: gibberellin biosynthetic process	1.06E-02
86	GO:0001944: vasculature development	1.06E-02
87	GO:0009790: embryo development	1.18E-02
88	GO:0006979: response to oxidative stress	1.20E-02
89	GO:0006633: fatty acid biosynthetic process	1.27E-02
90	GO:0046323: glucose import	1.32E-02
91	GO:0019252: starch biosynthetic process	1.46E-02
92	GO:0071554: cell wall organization or biogenesis	1.54E-02
93	GO:0009409: response to cold	1.87E-02
94	GO:0009607: response to biotic stimulus	2.07E-02
95	GO:0009627: systemic acquired resistance	2.16E-02
96	GO:0016311: dephosphorylation	2.32E-02
97	GO:0009817: defense response to fungus, incompatible interaction	2.41E-02
98	GO:0010218: response to far red light	2.58E-02
99	GO:0009834: plant-type secondary cell wall biogenesis	2.58E-02
100	GO:0010119: regulation of stomatal movement	2.67E-02
101	GO:0009637: response to blue light	2.85E-02
102	GO:0006099: tricarboxylic acid cycle	2.94E-02
103	GO:0006631: fatty acid metabolic process	3.22E-02
104	GO:0010114: response to red light	3.42E-02
105	GO:0006869: lipid transport	3.53E-02
106	GO:0009965: leaf morphogenesis	3.71E-02
107	GO:0009664: plant-type cell wall organization	4.01E-02
108	GO:0006364: rRNA processing	4.22E-02
109	GO:0009585: red, far-red light phototransduction	4.22E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
3	GO:0009899: ent-kaurene synthase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0019843: rRNA binding	1.77E-05
7	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.93E-05
8	GO:2001070: starch binding	4.69E-05
9	GO:0048038: quinone binding	1.08E-04
10	GO:0004134: 4-alpha-glucanotransferase activity	1.56E-04
11	GO:0019203: carbohydrate phosphatase activity	1.56E-04
12	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.56E-04
13	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.56E-04
14	GO:0080132: fatty acid alpha-hydroxylase activity	1.56E-04
15	GO:0050308: sugar-phosphatase activity	1.56E-04
16	GO:0003844: 1,4-alpha-glucan branching enzyme activity	3.55E-04
17	GO:0042389: omega-3 fatty acid desaturase activity	3.55E-04
18	GO:0016868: intramolecular transferase activity, phosphotransferases	3.55E-04
19	GO:0010297: heteropolysaccharide binding	3.55E-04
20	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.55E-04
21	GO:0031409: pigment binding	5.28E-04
22	GO:0090729: toxin activity	5.82E-04
23	GO:0043169: cation binding	5.82E-04
24	GO:0017150: tRNA dihydrouridine synthase activity	5.82E-04
25	GO:0005528: FK506 binding	5.84E-04
26	GO:0016851: magnesium chelatase activity	8.33E-04
27	GO:0016149: translation release factor activity, codon specific	8.33E-04
28	GO:0043023: ribosomal large subunit binding	8.33E-04
29	GO:0042277: peptide binding	1.10E-03
30	GO:0016279: protein-lysine N-methyltransferase activity	1.10E-03
31	GO:0019199: transmembrane receptor protein kinase activity	1.10E-03
32	GO:0016615: malate dehydrogenase activity	1.72E-03
33	GO:0030060: L-malate dehydrogenase activity	2.06E-03
34	GO:0004602: glutathione peroxidase activity	2.06E-03
35	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.06E-03
36	GO:0016168: chlorophyll binding	2.11E-03
37	GO:0004033: aldo-keto reductase (NADP) activity	2.80E-03
38	GO:0005337: nucleoside transmembrane transporter activity	2.80E-03
39	GO:0003735: structural constituent of ribosome	3.12E-03
40	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.21E-03
41	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	3.63E-03
42	GO:0003747: translation release factor activity	3.63E-03
43	GO:0000287: magnesium ion binding	3.83E-03
44	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.91E-03
45	GO:0044183: protein binding involved in protein folding	4.99E-03
46	GO:0003691: double-stranded telomeric DNA binding	4.99E-03
47	GO:0016491: oxidoreductase activity	5.09E-03
48	GO:0031072: heat shock protein binding	5.98E-03
49	GO:0004565: beta-galactosidase activity	5.98E-03
50	GO:0051082: unfolded protein binding	8.06E-03
51	GO:0009055: electron carrier activity	9.25E-03
52	GO:0008408: 3'-5' exonuclease activity	9.34E-03
53	GO:0030570: pectate lyase activity	1.06E-02
54	GO:0022891: substrate-specific transmembrane transporter activity	1.06E-02
55	GO:0016829: lyase activity	1.09E-02
56	GO:0003756: protein disulfide isomerase activity	1.12E-02
57	GO:0005355: glucose transmembrane transporter activity	1.39E-02
58	GO:0005200: structural constituent of cytoskeleton	1.84E-02
59	GO:0008483: transaminase activity	1.84E-02
60	GO:0016413: O-acetyltransferase activity	1.92E-02
61	GO:0016788: hydrolase activity, acting on ester bonds	2.21E-02
62	GO:0030145: manganese ion binding	2.67E-02
63	GO:0051537: 2 iron, 2 sulfur cluster binding	3.61E-02
64	GO:0043621: protein self-association	3.61E-02
65	GO:0005198: structural molecule activity	3.71E-02
66	GO:0003924: GTPase activity	3.96E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0042579: microbody	0.00E+00
3	GO:0009507: chloroplast	1.04E-26
4	GO:0009535: chloroplast thylakoid membrane	7.22E-15
5	GO:0009570: chloroplast stroma	7.08E-14
6	GO:0009941: chloroplast envelope	3.87E-13
7	GO:0009534: chloroplast thylakoid	4.38E-13
8	GO:0009579: thylakoid	1.45E-10
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.70E-08
10	GO:0009543: chloroplast thylakoid lumen	9.34E-07
11	GO:0010287: plastoglobule	1.55E-05
12	GO:0031977: thylakoid lumen	3.60E-05
13	GO:0009538: photosystem I reaction center	1.13E-04
14	GO:0000791: euchromatin	1.56E-04
15	GO:0030870: Mre11 complex	3.55E-04
16	GO:0030095: chloroplast photosystem II	4.23E-04
17	GO:0030076: light-harvesting complex	4.74E-04
18	GO:0010007: magnesium chelatase complex	5.82E-04
19	GO:0042651: thylakoid membrane	6.43E-04
20	GO:0009654: photosystem II oxygen evolving complex	6.43E-04
21	GO:0009522: photosystem I	1.21E-03
22	GO:0009523: photosystem II	1.30E-03
23	GO:0019898: extrinsic component of membrane	1.30E-03
24	GO:0000795: synaptonemal complex	1.40E-03
25	GO:0009501: amyloplast	2.80E-03
26	GO:0000783: nuclear telomere cap complex	3.21E-03
27	GO:0005840: ribosome	3.41E-03
28	GO:0045298: tubulin complex	3.63E-03
29	GO:0000785: chromatin	1.61E-02
30	GO:0009295: nucleoid	1.84E-02
31	GO:0005874: microtubule	2.60E-02
32	GO:0015934: large ribosomal subunit	2.67E-02
33	GO:0031969: chloroplast membrane	2.69E-02
34	GO:0048046: apoplast	2.91E-02
35	GO:0016020: membrane	3.72E-02
36	GO:0005834: heterotrimeric G-protein complex	4.97E-02