co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G43920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:1905177: tracheary element differentiation	0.00E+00
3	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0030155: regulation of cell adhesion	0.00E+00
6	GO:0019323: pentose catabolic process	0.00E+00
7	GO:0000025: maltose catabolic process	0.00E+00
8	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
9	GO:0005980: glycogen catabolic process	0.00E+00
10	GO:0016553: base conversion or substitution editing	0.00E+00
11	GO:0009735: response to cytokinin	4.99E-10
12	GO:0032544: plastid translation	3.22E-09
13	GO:0042254: ribosome biogenesis	4.44E-07
14	GO:0006412: translation	5.60E-07
15	GO:0015979: photosynthesis	1.77E-06
16	GO:0005983: starch catabolic process	2.39E-06
17	GO:0009409: response to cold	2.95E-06
18	GO:0009773: photosynthetic electron transport in photosystem I	6.43E-05
19	GO:0010021: amylopectin biosynthetic process	9.11E-05
20	GO:0019464: glycine decarboxylation via glycine cleavage system	9.11E-05
21	GO:0006461: protein complex assembly	1.42E-04
22	GO:0009817: defense response to fungus, incompatible interaction	1.87E-04
23	GO:0043489: RNA stabilization	3.89E-04
24	GO:0044262: cellular carbohydrate metabolic process	3.89E-04
25	GO:0032958: inositol phosphate biosynthetic process	3.89E-04
26	GO:0000023: maltose metabolic process	3.89E-04
27	GO:0005978: glycogen biosynthetic process	4.44E-04
28	GO:0030091: protein repair	4.44E-04
29	GO:0019252: starch biosynthetic process	5.82E-04
30	GO:0010206: photosystem II repair	6.50E-04
31	GO:0005982: starch metabolic process	7.68E-04
32	GO:0005976: polysaccharide metabolic process	8.44E-04
33	GO:0006521: regulation of cellular amino acid metabolic process	8.44E-04
34	GO:0030388: fructose 1,6-bisphosphate metabolic process	8.44E-04
35	GO:0010027: thylakoid membrane organization	1.01E-03
36	GO:0009658: chloroplast organization	1.18E-03
37	GO:0042742: defense response to bacterium	1.22E-03
38	GO:0015995: chlorophyll biosynthetic process	1.24E-03
39	GO:0006979: response to oxidative stress	1.25E-03
40	GO:0006094: gluconeogenesis	1.33E-03
41	GO:0006518: peptide metabolic process	1.37E-03
42	GO:0010623: programmed cell death involved in cell development	1.37E-03
43	GO:0080055: low-affinity nitrate transport	1.37E-03
44	GO:0016050: vesicle organization	1.37E-03
45	GO:0048281: inflorescence morphogenesis	1.37E-03
46	GO:0006000: fructose metabolic process	1.37E-03
47	GO:0009631: cold acclimation	1.69E-03
48	GO:0010731: protein glutathionylation	1.97E-03
49	GO:0006228: UTP biosynthetic process	1.97E-03
50	GO:0006424: glutamyl-tRNA aminoacylation	1.97E-03
51	GO:0010148: transpiration	1.97E-03
52	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.97E-03
53	GO:0006020: inositol metabolic process	1.97E-03
54	GO:1901000: regulation of response to salt stress	1.97E-03
55	GO:0006241: CTP biosynthetic process	1.97E-03
56	GO:0030100: regulation of endocytosis	1.97E-03
57	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.97E-03
58	GO:0006165: nucleoside diphosphate phosphorylation	1.97E-03
59	GO:0006289: nucleotide-excision repair	2.08E-03
60	GO:0045454: cell redox homeostasis	2.37E-03
61	GO:0061077: chaperone-mediated protein folding	2.52E-03
62	GO:0006546: glycine catabolic process	2.65E-03
63	GO:0010508: positive regulation of autophagy	2.65E-03
64	GO:0006021: inositol biosynthetic process	2.65E-03
65	GO:0010037: response to carbon dioxide	2.65E-03
66	GO:0006808: regulation of nitrogen utilization	2.65E-03
67	GO:0015976: carbon utilization	2.65E-03
68	GO:0010023: proanthocyanidin biosynthetic process	2.65E-03
69	GO:0009765: photosynthesis, light harvesting	2.65E-03
70	GO:0006109: regulation of carbohydrate metabolic process	2.65E-03
71	GO:0006183: GTP biosynthetic process	2.65E-03
72	GO:0045727: positive regulation of translation	2.65E-03
73	GO:2000122: negative regulation of stomatal complex development	2.65E-03
74	GO:0010600: regulation of auxin biosynthetic process	2.65E-03
75	GO:0006552: leucine catabolic process	2.65E-03
76	GO:0006544: glycine metabolic process	3.40E-03
77	GO:0032543: mitochondrial translation	3.40E-03
78	GO:0046686: response to cadmium ion	3.53E-03
79	GO:0006563: L-serine metabolic process	4.20E-03
80	GO:0000470: maturation of LSU-rRNA	4.20E-03
81	GO:0009913: epidermal cell differentiation	4.20E-03
82	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.06E-03
83	GO:0006458: 'de novo' protein folding	5.06E-03
84	GO:1901259: chloroplast rRNA processing	5.06E-03
85	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	5.06E-03
86	GO:0009955: adaxial/abaxial pattern specification	5.06E-03
87	GO:0071470: cellular response to osmotic stress	5.06E-03
88	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	5.06E-03
89	GO:0042026: protein refolding	5.06E-03
90	GO:0030163: protein catabolic process	5.81E-03
91	GO:0009645: response to low light intensity stimulus	5.98E-03
92	GO:0022904: respiratory electron transport chain	5.98E-03
93	GO:0010103: stomatal complex morphogenesis	5.98E-03
94	GO:0010161: red light signaling pathway	5.98E-03
95	GO:0010196: nonphotochemical quenching	5.98E-03
96	GO:0070370: cellular heat acclimation	5.98E-03
97	GO:0006353: DNA-templated transcription, termination	6.95E-03
98	GO:0009704: de-etiolation	6.95E-03
99	GO:0010928: regulation of auxin mediated signaling pathway	6.95E-03
100	GO:0009657: plastid organization	7.98E-03
101	GO:0006002: fructose 6-phosphate metabolic process	7.98E-03
102	GO:0001558: regulation of cell growth	7.98E-03
103	GO:0006783: heme biosynthetic process	9.05E-03
104	GO:0005975: carbohydrate metabolic process	9.22E-03
105	GO:0035999: tetrahydrofolate interconversion	1.02E-02
106	GO:0042761: very long-chain fatty acid biosynthetic process	1.02E-02
107	GO:0031627: telomeric loop formation	1.14E-02
108	GO:0006782: protoporphyrinogen IX biosynthetic process	1.14E-02
109	GO:0007623: circadian rhythm	1.21E-02
110	GO:0055114: oxidation-reduction process	1.24E-02
111	GO:0043085: positive regulation of catalytic activity	1.26E-02
112	GO:0006415: translational termination	1.26E-02
113	GO:0009750: response to fructose	1.26E-02
114	GO:0016485: protein processing	1.26E-02
115	GO:0010015: root morphogenesis	1.26E-02
116	GO:0034599: cellular response to oxidative stress	1.28E-02
117	GO:0008152: metabolic process	1.48E-02
118	GO:0010102: lateral root morphogenesis	1.52E-02
119	GO:0006006: glucose metabolic process	1.52E-02
120	GO:0009718: anthocyanin-containing compound biosynthetic process	1.52E-02
121	GO:0009767: photosynthetic electron transport chain	1.52E-02
122	GO:0005986: sucrose biosynthetic process	1.52E-02
123	GO:0009266: response to temperature stimulus	1.65E-02
124	GO:0010020: chloroplast fission	1.65E-02
125	GO:0009644: response to high light intensity	1.72E-02
126	GO:0010025: wax biosynthetic process	1.94E-02
127	GO:0009944: polarity specification of adaxial/abaxial axis	2.08E-02
128	GO:0000027: ribosomal large subunit assembly	2.08E-02
129	GO:0009585: red, far-red light phototransduction	2.14E-02
130	GO:0007017: microtubule-based process	2.24E-02
131	GO:0009768: photosynthesis, light harvesting in photosystem I	2.24E-02
132	GO:0051302: regulation of cell division	2.24E-02
133	GO:0035428: hexose transmembrane transport	2.55E-02
134	GO:0030245: cellulose catabolic process	2.55E-02
135	GO:0010017: red or far-red light signaling pathway	2.55E-02
136	GO:0009411: response to UV	2.71E-02
137	GO:0001944: vasculature development	2.71E-02
138	GO:0006012: galactose metabolic process	2.71E-02
139	GO:0009686: gibberellin biosynthetic process	2.71E-02
140	GO:0080167: response to karrikin	2.77E-02
141	GO:0010089: xylem development	2.88E-02
142	GO:0006284: base-excision repair	2.88E-02
143	GO:0009414: response to water deprivation	3.00E-02
144	GO:0042335: cuticle development	3.22E-02
145	GO:0006662: glycerol ether metabolic process	3.40E-02
146	GO:0046323: glucose import	3.40E-02
147	GO:0015986: ATP synthesis coupled proton transport	3.58E-02
148	GO:0009646: response to absence of light	3.58E-02
149	GO:0048825: cotyledon development	3.76E-02
150	GO:0008654: phospholipid biosynthetic process	3.76E-02
151	GO:0000302: response to reactive oxygen species	3.95E-02
152	GO:0071281: cellular response to iron ion	4.33E-02
153	GO:0009790: embryo development	4.44E-02
154	GO:0006629: lipid metabolic process	4.48E-02
155	GO:0006310: DNA recombination	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0048039: ubiquinone binding	0.00E+00
2	GO:0009899: ent-kaurene synthase activity	0.00E+00
3	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
4	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0008184: glycogen phosphorylase activity	0.00E+00
7	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
8	GO:0004134: 4-alpha-glucanotransferase activity	0.00E+00
9	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
10	GO:0004645: phosphorylase activity	0.00E+00
11	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
12	GO:0019843: rRNA binding	4.65E-14
13	GO:0003735: structural constituent of ribosome	2.41E-09
14	GO:0008266: poly(U) RNA binding	4.28E-06
15	GO:0005528: FK506 binding	1.89E-04
16	GO:0051920: peroxiredoxin activity	2.74E-04
17	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.74E-04
18	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	3.89E-04
19	GO:0004853: uroporphyrinogen decarboxylase activity	3.89E-04
20	GO:0019203: carbohydrate phosphatase activity	3.89E-04
21	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	3.89E-04
22	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	3.89E-04
23	GO:0000829: inositol heptakisphosphate kinase activity	3.89E-04
24	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.89E-04
25	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.89E-04
26	GO:0004856: xylulokinase activity	3.89E-04
27	GO:0000828: inositol hexakisphosphate kinase activity	3.89E-04
28	GO:0009496: plastoquinol--plastocyanin reductase activity	3.89E-04
29	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	3.89E-04
30	GO:0016209: antioxidant activity	4.44E-04
31	GO:0004512: inositol-3-phosphate synthase activity	8.44E-04
32	GO:0050736: O-malonyltransferase activity	8.44E-04
33	GO:0008967: phosphoglycolate phosphatase activity	8.44E-04
34	GO:0016868: intramolecular transferase activity, phosphotransferases	8.44E-04
35	GO:0010297: heteropolysaccharide binding	8.44E-04
36	GO:0033201: alpha-1,4-glucan synthase activity	8.44E-04
37	GO:0004750: ribulose-phosphate 3-epimerase activity	8.44E-04
38	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	8.44E-04
39	GO:0003844: 1,4-alpha-glucan branching enzyme activity	8.44E-04
40	GO:0044183: protein binding involved in protein folding	1.03E-03
41	GO:0047372: acylglycerol lipase activity	1.03E-03
42	GO:0004565: beta-galactosidase activity	1.33E-03
43	GO:0017108: 5'-flap endonuclease activity	1.37E-03
44	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.37E-03
45	GO:0030267: glyoxylate reductase (NADP) activity	1.37E-03
46	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.37E-03
47	GO:0004324: ferredoxin-NADP+ reductase activity	1.37E-03
48	GO:0043169: cation binding	1.37E-03
49	GO:0004373: glycogen (starch) synthase activity	1.37E-03
50	GO:0017150: tRNA dihydrouridine synthase activity	1.37E-03
51	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.37E-03
52	GO:0005504: fatty acid binding	1.37E-03
53	GO:0004222: metalloendopeptidase activity	1.59E-03
54	GO:0016149: translation release factor activity, codon specific	1.97E-03
55	GO:0016851: magnesium chelatase activity	1.97E-03
56	GO:0004550: nucleoside diphosphate kinase activity	1.97E-03
57	GO:0043023: ribosomal large subunit binding	1.97E-03
58	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.97E-03
59	GO:0019201: nucleotide kinase activity	1.97E-03
60	GO:0016491: oxidoreductase activity	2.37E-03
61	GO:0008878: glucose-1-phosphate adenylyltransferase activity	2.65E-03
62	GO:0042277: peptide binding	2.65E-03
63	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.65E-03
64	GO:0019104: DNA N-glycosylase activity	2.65E-03
65	GO:0045430: chalcone isomerase activity	2.65E-03
66	GO:0009011: starch synthase activity	2.65E-03
67	GO:0019199: transmembrane receptor protein kinase activity	2.65E-03
68	GO:0051537: 2 iron, 2 sulfur cluster binding	2.91E-03
69	GO:0030570: pectate lyase activity	3.01E-03
70	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.20E-03
71	GO:0004372: glycine hydroxymethyltransferase activity	3.40E-03
72	GO:0003959: NADPH dehydrogenase activity	3.40E-03
73	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.40E-03
74	GO:0009055: electron carrier activity	3.89E-03
75	GO:2001070: starch binding	4.20E-03
76	GO:0004332: fructose-bisphosphate aldolase activity	4.20E-03
77	GO:0004130: cytochrome-c peroxidase activity	4.20E-03
78	GO:0050662: coenzyme binding	4.44E-03
79	GO:0004602: glutathione peroxidase activity	5.06E-03
80	GO:0004017: adenylate kinase activity	5.06E-03
81	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	5.06E-03
82	GO:0048038: quinone binding	5.10E-03
83	GO:0004033: aldo-keto reductase (NADP) activity	6.95E-03
84	GO:0004034: aldose 1-epimerase activity	6.95E-03
85	GO:0015078: hydrogen ion transmembrane transporter activity	7.98E-03
86	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	9.05E-03
87	GO:0003747: translation release factor activity	9.05E-03
88	GO:0008236: serine-type peptidase activity	9.18E-03
89	GO:0030170: pyridoxal phosphate binding	9.19E-03
90	GO:0004252: serine-type endopeptidase activity	9.19E-03
91	GO:0008047: enzyme activator activity	1.14E-02
92	GO:0003691: double-stranded telomeric DNA binding	1.26E-02
93	GO:0015386: potassium:proton antiporter activity	1.26E-02
94	GO:0004022: alcohol dehydrogenase (NAD) activity	1.52E-02
95	GO:0004089: carbonate dehydratase activity	1.52E-02
96	GO:0031072: heat shock protein binding	1.52E-02
97	GO:0004190: aspartic-type endopeptidase activity	1.79E-02
98	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.94E-02
99	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.94E-02
100	GO:0031409: pigment binding	1.94E-02
101	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.94E-02
102	GO:0004857: enzyme inhibitor activity	2.08E-02
103	GO:0004601: peroxidase activity	2.11E-02
104	GO:0015079: potassium ion transmembrane transporter activity	2.24E-02
105	GO:0008810: cellulase activity	2.71E-02
106	GO:0051082: unfolded protein binding	3.05E-02
107	GO:0047134: protein-disulfide reductase activity	3.05E-02
108	GO:0015035: protein disulfide oxidoreductase activity	3.14E-02
109	GO:0001085: RNA polymerase II transcription factor binding	3.40E-02
110	GO:0004791: thioredoxin-disulfide reductase activity	3.58E-02
111	GO:0016853: isomerase activity	3.58E-02
112	GO:0005355: glucose transmembrane transporter activity	3.58E-02
113	GO:0016829: lyase activity	4.12E-02
114	GO:0004518: nuclease activity	4.14E-02
115	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.33E-02
116	GO:0003684: damaged DNA binding	4.53E-02
117	GO:0008237: metallopeptidase activity	4.72E-02
118	GO:0005200: structural constituent of cytoskeleton	4.72E-02
119	GO:0016597: amino acid binding	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0033557: Slx1-Slx4 complex	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
4	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
5	GO:0009507: chloroplast	8.14E-53
6	GO:0009941: chloroplast envelope	6.17E-46
7	GO:0009570: chloroplast stroma	6.48E-46
8	GO:0009534: chloroplast thylakoid	1.22E-34
9	GO:0009535: chloroplast thylakoid membrane	6.46E-29
10	GO:0009579: thylakoid	7.93E-25
11	GO:0010287: plastoglobule	5.44E-10
12	GO:0009543: chloroplast thylakoid lumen	7.16E-10
13	GO:0005840: ribosome	1.43E-09
14	GO:0031977: thylakoid lumen	2.66E-06
15	GO:0010319: stromule	5.65E-06
16	GO:0009533: chloroplast stromal thylakoid	1.01E-05
17	GO:0009501: amyloplast	1.51E-05
18	GO:0048046: apoplast	2.31E-05
19	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.96E-05
20	GO:0009295: nucleoid	9.41E-05
21	GO:0009508: plastid chromosome	9.74E-05
22	GO:0016020: membrane	1.53E-04
23	GO:0009706: chloroplast inner membrane	1.95E-04
24	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.89E-04
25	GO:0009538: photosystem I reaction center	4.44E-04
26	GO:0030093: chloroplast photosystem I	8.44E-04
27	GO:0000311: plastid large ribosomal subunit	1.17E-03
28	GO:0010007: magnesium chelatase complex	1.37E-03
29	GO:0030095: chloroplast photosystem II	1.50E-03
30	GO:0005960: glycine cleavage complex	1.97E-03
31	GO:0009512: cytochrome b6f complex	3.40E-03
32	GO:0005798: Golgi-associated vesicle	4.20E-03
33	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	4.20E-03
34	GO:0009523: photosystem II	4.76E-03
35	GO:0009536: plastid	5.83E-03
36	GO:0031305: integral component of mitochondrial inner membrane	6.95E-03
37	GO:0031969: chloroplast membrane	7.09E-03
38	GO:0000783: nuclear telomere cap complex	7.98E-03
39	GO:0042644: chloroplast nucleoid	9.05E-03
40	GO:0045298: tubulin complex	9.05E-03
41	GO:0005763: mitochondrial small ribosomal subunit	9.05E-03
42	GO:0005740: mitochondrial envelope	1.14E-02
43	GO:0000312: plastid small ribosomal subunit	1.65E-02
44	GO:0030076: light-harvesting complex	1.79E-02
45	GO:0005769: early endosome	1.94E-02
46	GO:0042651: thylakoid membrane	2.24E-02
47	GO:0009654: photosystem II oxygen evolving complex	2.24E-02
48	GO:0015935: small ribosomal subunit	2.39E-02
49	GO:0022625: cytosolic large ribosomal subunit	2.95E-02
50	GO:0009522: photosystem I	3.58E-02
51	GO:0019898: extrinsic component of membrane	3.76E-02
52	GO:0009505: plant-type cell wall	4.52E-02
53	GO:0005759: mitochondrial matrix	4.78E-02