GO Enrichment Analysis of Co-expressed Genes with
AT2G43560
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 2 | GO:0019323: pentose catabolic process | 0.00E+00 |
| 3 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 4 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 5 | GO:0006223: uracil salvage | 0.00E+00 |
| 6 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 7 | GO:1905177: tracheary element differentiation | 0.00E+00 |
| 8 | GO:0032544: plastid translation | 1.18E-12 |
| 9 | GO:0009735: response to cytokinin | 1.25E-12 |
| 10 | GO:0006412: translation | 4.99E-11 |
| 11 | GO:0009409: response to cold | 1.74E-08 |
| 12 | GO:0042254: ribosome biogenesis | 1.64E-07 |
| 13 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.69E-07 |
| 14 | GO:0015979: photosynthesis | 5.92E-07 |
| 15 | GO:0042742: defense response to bacterium | 2.11E-05 |
| 16 | GO:0009658: chloroplast organization | 2.89E-05 |
| 17 | GO:0000413: protein peptidyl-prolyl isomerization | 1.31E-04 |
| 18 | GO:0010196: nonphotochemical quenching | 1.40E-04 |
| 19 | GO:0010028: xanthophyll cycle | 2.11E-04 |
| 20 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.11E-04 |
| 21 | GO:0043489: RNA stabilization | 2.11E-04 |
| 22 | GO:0044262: cellular carbohydrate metabolic process | 2.11E-04 |
| 23 | GO:0010206: photosystem II repair | 2.70E-04 |
| 24 | GO:0010027: thylakoid membrane organization | 3.27E-04 |
| 25 | GO:0009773: photosynthetic electron transport in photosystem I | 4.36E-04 |
| 26 | GO:0009817: defense response to fungus, incompatible interaction | 4.62E-04 |
| 27 | GO:0016122: xanthophyll metabolic process | 4.71E-04 |
| 28 | GO:0010270: photosystem II oxygen evolving complex assembly | 4.71E-04 |
| 29 | GO:0045454: cell redox homeostasis | 4.89E-04 |
| 30 | GO:0005983: starch catabolic process | 4.99E-04 |
| 31 | GO:0009631: cold acclimation | 5.55E-04 |
| 32 | GO:0034599: cellular response to oxidative stress | 6.60E-04 |
| 33 | GO:0055114: oxidation-reduction process | 6.80E-04 |
| 34 | GO:0006518: peptide metabolic process | 7.67E-04 |
| 35 | GO:0010623: programmed cell death involved in cell development | 7.67E-04 |
| 36 | GO:0006289: nucleotide-excision repair | 8.76E-04 |
| 37 | GO:0006241: CTP biosynthetic process | 1.09E-03 |
| 38 | GO:0006165: nucleoside diphosphate phosphorylation | 1.09E-03 |
| 39 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.09E-03 |
| 40 | GO:0006228: UTP biosynthetic process | 1.09E-03 |
| 41 | GO:0010731: protein glutathionylation | 1.09E-03 |
| 42 | GO:0006424: glutamyl-tRNA aminoacylation | 1.09E-03 |
| 43 | GO:0015976: carbon utilization | 1.45E-03 |
| 44 | GO:0006109: regulation of carbohydrate metabolic process | 1.45E-03 |
| 45 | GO:0006183: GTP biosynthetic process | 1.45E-03 |
| 46 | GO:0045727: positive regulation of translation | 1.45E-03 |
| 47 | GO:0015994: chlorophyll metabolic process | 1.45E-03 |
| 48 | GO:0010508: positive regulation of autophagy | 1.45E-03 |
| 49 | GO:2000122: negative regulation of stomatal complex development | 1.45E-03 |
| 50 | GO:0044206: UMP salvage | 1.45E-03 |
| 51 | GO:0006546: glycine catabolic process | 1.45E-03 |
| 52 | GO:0010037: response to carbon dioxide | 1.45E-03 |
| 53 | GO:0006808: regulation of nitrogen utilization | 1.45E-03 |
| 54 | GO:0006461: protein complex assembly | 1.85E-03 |
| 55 | GO:0006544: glycine metabolic process | 1.85E-03 |
| 56 | GO:0043097: pyrimidine nucleoside salvage | 1.85E-03 |
| 57 | GO:0032543: mitochondrial translation | 1.85E-03 |
| 58 | GO:0019252: starch biosynthetic process | 1.97E-03 |
| 59 | GO:0000302: response to reactive oxygen species | 2.10E-03 |
| 60 | GO:0042549: photosystem II stabilization | 2.28E-03 |
| 61 | GO:0000470: maturation of LSU-rRNA | 2.28E-03 |
| 62 | GO:0006828: manganese ion transport | 2.28E-03 |
| 63 | GO:0006206: pyrimidine nucleobase metabolic process | 2.28E-03 |
| 64 | GO:0006563: L-serine metabolic process | 2.28E-03 |
| 65 | GO:0009955: adaxial/abaxial pattern specification | 2.74E-03 |
| 66 | GO:1901259: chloroplast rRNA processing | 2.74E-03 |
| 67 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.74E-03 |
| 68 | GO:0010019: chloroplast-nucleus signaling pathway | 2.74E-03 |
| 69 | GO:0010555: response to mannitol | 2.74E-03 |
| 70 | GO:0015995: chlorophyll biosynthetic process | 3.56E-03 |
| 71 | GO:0019827: stem cell population maintenance | 3.74E-03 |
| 72 | GO:0008610: lipid biosynthetic process | 3.74E-03 |
| 73 | GO:0005978: glycogen biosynthetic process | 3.74E-03 |
| 74 | GO:0009642: response to light intensity | 3.74E-03 |
| 75 | GO:0009704: de-etiolation | 3.74E-03 |
| 76 | GO:0007623: circadian rhythm | 3.87E-03 |
| 77 | GO:0009657: plastid organization | 4.29E-03 |
| 78 | GO:0006783: heme biosynthetic process | 4.85E-03 |
| 79 | GO:0009853: photorespiration | 4.99E-03 |
| 80 | GO:0005982: starch metabolic process | 5.44E-03 |
| 81 | GO:0035999: tetrahydrofolate interconversion | 5.44E-03 |
| 82 | GO:0006631: fatty acid metabolic process | 5.93E-03 |
| 83 | GO:0006782: protoporphyrinogen IX biosynthetic process | 6.06E-03 |
| 84 | GO:0006816: calcium ion transport | 6.69E-03 |
| 85 | GO:0006415: translational termination | 6.69E-03 |
| 86 | GO:0009089: lysine biosynthetic process via diaminopimelate | 6.69E-03 |
| 87 | GO:0043085: positive regulation of catalytic activity | 6.69E-03 |
| 88 | GO:0016485: protein processing | 6.69E-03 |
| 89 | GO:0045037: protein import into chloroplast stroma | 7.36E-03 |
| 90 | GO:0009767: photosynthetic electron transport chain | 8.04E-03 |
| 91 | GO:0010102: lateral root morphogenesis | 8.04E-03 |
| 92 | GO:0009585: red, far-red light phototransduction | 8.67E-03 |
| 93 | GO:0010020: chloroplast fission | 8.75E-03 |
| 94 | GO:0010207: photosystem II assembly | 8.75E-03 |
| 95 | GO:0019344: cysteine biosynthetic process | 1.10E-02 |
| 96 | GO:0009116: nucleoside metabolic process | 1.10E-02 |
| 97 | GO:0000027: ribosomal large subunit assembly | 1.10E-02 |
| 98 | GO:0030150: protein import into mitochondrial matrix | 1.10E-02 |
| 99 | GO:0051017: actin filament bundle assembly | 1.10E-02 |
| 100 | GO:0006418: tRNA aminoacylation for protein translation | 1.18E-02 |
| 101 | GO:0007017: microtubule-based process | 1.18E-02 |
| 102 | GO:0006012: galactose metabolic process | 1.43E-02 |
| 103 | GO:0009411: response to UV | 1.43E-02 |
| 104 | GO:0046686: response to cadmium ion | 1.44E-02 |
| 105 | GO:0010089: xylem development | 1.52E-02 |
| 106 | GO:0006284: base-excision repair | 1.52E-02 |
| 107 | GO:0008152: metabolic process | 1.65E-02 |
| 108 | GO:0042744: hydrogen peroxide catabolic process | 1.77E-02 |
| 109 | GO:0006662: glycerol ether metabolic process | 1.79E-02 |
| 110 | GO:0009790: embryo development | 1.81E-02 |
| 111 | GO:0015986: ATP synthesis coupled proton transport | 1.88E-02 |
| 112 | GO:0009749: response to glucose | 1.98E-02 |
| 113 | GO:0032502: developmental process | 2.18E-02 |
| 114 | GO:0010583: response to cyclopentenone | 2.18E-02 |
| 115 | GO:0006979: response to oxidative stress | 2.28E-02 |
| 116 | GO:0030163: protein catabolic process | 2.28E-02 |
| 117 | GO:0015031: protein transport | 3.21E-02 |
| 118 | GO:0048481: plant ovule development | 3.27E-02 |
| 119 | GO:0000160: phosphorelay signal transduction system | 3.38E-02 |
| 120 | GO:0009813: flavonoid biosynthetic process | 3.38E-02 |
| 121 | GO:0010119: regulation of stomatal movement | 3.62E-02 |
| 122 | GO:0045087: innate immune response | 3.86E-02 |
| 123 | GO:0080167: response to karrikin | 4.11E-02 |
| 124 | GO:0006457: protein folding | 4.12E-02 |
| 125 | GO:0005975: carbohydrate metabolic process | 4.15E-02 |
| 126 | GO:0006508: proteolysis | 4.47E-02 |
| 127 | GO:0042542: response to hydrogen peroxide | 4.50E-02 |
| 128 | GO:0009744: response to sucrose | 4.63E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 2 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 3 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 4 | GO:0010303: limit dextrinase activity | 0.00E+00 |
| 5 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 6 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 7 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 8 | GO:0051060: pullulanase activity | 0.00E+00 |
| 9 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 10 | GO:0019843: rRNA binding | 1.38E-16 |
| 11 | GO:0003735: structural constituent of ribosome | 1.27E-13 |
| 12 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.64E-07 |
| 13 | GO:0008266: poly(U) RNA binding | 5.99E-07 |
| 14 | GO:0051920: peroxiredoxin activity | 1.32E-06 |
| 15 | GO:0016209: antioxidant activity | 3.28E-06 |
| 16 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.76E-05 |
| 17 | GO:0005528: FK506 binding | 5.12E-05 |
| 18 | GO:0004130: cytochrome-c peroxidase activity | 7.64E-05 |
| 19 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 2.11E-04 |
| 20 | GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | 2.11E-04 |
| 21 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.11E-04 |
| 22 | GO:0005534: galactose binding | 2.11E-04 |
| 23 | GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity | 2.11E-04 |
| 24 | GO:0004856: xylulokinase activity | 2.11E-04 |
| 25 | GO:0009496: plastoquinol--plastocyanin reductase activity | 2.11E-04 |
| 26 | GO:0004853: uroporphyrinogen decarboxylase activity | 2.11E-04 |
| 27 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 2.11E-04 |
| 28 | GO:0019203: carbohydrate phosphatase activity | 2.11E-04 |
| 29 | GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity | 2.11E-04 |
| 30 | GO:0004750: ribulose-phosphate 3-epimerase activity | 4.71E-04 |
| 31 | GO:0018708: thiol S-methyltransferase activity | 4.71E-04 |
| 32 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 4.71E-04 |
| 33 | GO:0004222: metalloendopeptidase activity | 5.23E-04 |
| 34 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 7.67E-04 |
| 35 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 7.67E-04 |
| 36 | GO:0004324: ferredoxin-NADP+ reductase activity | 7.67E-04 |
| 37 | GO:0017150: tRNA dihydrouridine synthase activity | 7.67E-04 |
| 38 | GO:0002161: aminoacyl-tRNA editing activity | 7.67E-04 |
| 39 | GO:0004148: dihydrolipoyl dehydrogenase activity | 7.67E-04 |
| 40 | GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity | 7.67E-04 |
| 41 | GO:0005504: fatty acid binding | 7.67E-04 |
| 42 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 7.67E-04 |
| 43 | GO:0030267: glyoxylate reductase (NADP) activity | 7.67E-04 |
| 44 | GO:0070402: NADPH binding | 7.67E-04 |
| 45 | GO:0016149: translation release factor activity, codon specific | 1.09E-03 |
| 46 | GO:0004550: nucleoside diphosphate kinase activity | 1.09E-03 |
| 47 | GO:0043023: ribosomal large subunit binding | 1.09E-03 |
| 48 | GO:0004601: peroxidase activity | 1.30E-03 |
| 49 | GO:0004845: uracil phosphoribosyltransferase activity | 1.45E-03 |
| 50 | GO:0019104: DNA N-glycosylase activity | 1.45E-03 |
| 51 | GO:0045430: chalcone isomerase activity | 1.45E-03 |
| 52 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 1.45E-03 |
| 53 | GO:0050662: coenzyme binding | 1.83E-03 |
| 54 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.85E-03 |
| 55 | GO:0004372: glycine hydroxymethyltransferase activity | 1.85E-03 |
| 56 | GO:0003959: NADPH dehydrogenase activity | 1.85E-03 |
| 57 | GO:0045300: acyl-[acyl-carrier-protein] desaturase activity | 1.85E-03 |
| 58 | GO:0004556: alpha-amylase activity | 2.28E-03 |
| 59 | GO:0016688: L-ascorbate peroxidase activity | 2.28E-03 |
| 60 | GO:0004849: uridine kinase activity | 2.74E-03 |
| 61 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.74E-03 |
| 62 | GO:0004602: glutathione peroxidase activity | 2.74E-03 |
| 63 | GO:0004252: serine-type endopeptidase activity | 2.93E-03 |
| 64 | GO:0004620: phospholipase activity | 3.23E-03 |
| 65 | GO:0015288: porin activity | 3.74E-03 |
| 66 | GO:0004034: aldose 1-epimerase activity | 3.74E-03 |
| 67 | GO:0008236: serine-type peptidase activity | 3.75E-03 |
| 68 | GO:0015078: hydrogen ion transmembrane transporter activity | 4.29E-03 |
| 69 | GO:0003747: translation release factor activity | 4.85E-03 |
| 70 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 4.85E-03 |
| 71 | GO:0005384: manganese ion transmembrane transporter activity | 5.44E-03 |
| 72 | GO:0047617: acyl-CoA hydrolase activity | 5.44E-03 |
| 73 | GO:0008047: enzyme activator activity | 6.06E-03 |
| 74 | GO:0047372: acylglycerol lipase activity | 6.69E-03 |
| 75 | GO:0015386: potassium:proton antiporter activity | 6.69E-03 |
| 76 | GO:0000049: tRNA binding | 7.36E-03 |
| 77 | GO:0031072: heat shock protein binding | 8.04E-03 |
| 78 | GO:0015266: protein channel activity | 8.04E-03 |
| 79 | GO:0004022: alcohol dehydrogenase (NAD) activity | 8.04E-03 |
| 80 | GO:0004089: carbonate dehydratase activity | 8.04E-03 |
| 81 | GO:0015095: magnesium ion transmembrane transporter activity | 8.04E-03 |
| 82 | GO:0016787: hydrolase activity | 8.40E-03 |
| 83 | GO:0016491: oxidoreductase activity | 1.07E-02 |
| 84 | GO:0004857: enzyme inhibitor activity | 1.10E-02 |
| 85 | GO:0015079: potassium ion transmembrane transporter activity | 1.18E-02 |
| 86 | GO:0022891: substrate-specific transmembrane transporter activity | 1.43E-02 |
| 87 | GO:0004812: aminoacyl-tRNA ligase activity | 1.61E-02 |
| 88 | GO:0047134: protein-disulfide reductase activity | 1.61E-02 |
| 89 | GO:0004791: thioredoxin-disulfide reductase activity | 1.88E-02 |
| 90 | GO:0016853: isomerase activity | 1.88E-02 |
| 91 | GO:0048038: quinone binding | 2.08E-02 |
| 92 | GO:0000156: phosphorelay response regulator activity | 2.28E-02 |
| 93 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.28E-02 |
| 94 | GO:0051015: actin filament binding | 2.28E-02 |
| 95 | GO:0003684: damaged DNA binding | 2.38E-02 |
| 96 | GO:0008237: metallopeptidase activity | 2.49E-02 |
| 97 | GO:0005200: structural constituent of cytoskeleton | 2.49E-02 |
| 98 | GO:0016168: chlorophyll binding | 2.81E-02 |
| 99 | GO:0030247: polysaccharide binding | 3.04E-02 |
| 100 | GO:0008168: methyltransferase activity | 3.20E-02 |
| 101 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.27E-02 |
| 102 | GO:0003729: mRNA binding | 4.03E-02 |
| 103 | GO:0008233: peptidase activity | 4.04E-02 |
| 104 | GO:0004364: glutathione transferase activity | 4.50E-02 |
| 105 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0034426: etioplast membrane | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 1.68E-74 |
| 5 | GO:0009570: chloroplast stroma | 6.58E-57 |
| 6 | GO:0009941: chloroplast envelope | 1.22E-54 |
| 7 | GO:0009534: chloroplast thylakoid | 2.00E-41 |
| 8 | GO:0009579: thylakoid | 8.27E-40 |
| 9 | GO:0009535: chloroplast thylakoid membrane | 9.64E-35 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 1.38E-16 |
| 11 | GO:0031977: thylakoid lumen | 8.63E-16 |
| 12 | GO:0005840: ribosome | 1.22E-13 |
| 13 | GO:0010287: plastoglobule | 5.67E-09 |
| 14 | GO:0010319: stromule | 1.28E-08 |
| 15 | GO:0009533: chloroplast stromal thylakoid | 2.15E-06 |
| 16 | GO:0005960: glycine cleavage complex | 1.76E-05 |
| 17 | GO:0030095: chloroplast photosystem II | 3.01E-05 |
| 18 | GO:0048046: apoplast | 9.86E-05 |
| 19 | GO:0016020: membrane | 1.39E-04 |
| 20 | GO:0009538: photosystem I reaction center | 1.78E-04 |
| 21 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.11E-04 |
| 22 | GO:0009536: plastid | 2.12E-04 |
| 23 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.70E-04 |
| 24 | GO:0009295: nucleoid | 2.79E-04 |
| 25 | GO:0009706: chloroplast inner membrane | 2.87E-04 |
| 26 | GO:0030093: chloroplast photosystem I | 4.71E-04 |
| 27 | GO:0000311: plastid large ribosomal subunit | 4.99E-04 |
| 28 | GO:0009508: plastid chromosome | 5.67E-04 |
| 29 | GO:0009527: plastid outer membrane | 1.45E-03 |
| 30 | GO:0009517: PSII associated light-harvesting complex II | 1.45E-03 |
| 31 | GO:0009512: cytochrome b6f complex | 1.85E-03 |
| 32 | GO:0022625: cytosolic large ribosomal subunit | 1.95E-03 |
| 33 | GO:0009523: photosystem II | 1.97E-03 |
| 34 | GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o) | 2.28E-03 |
| 35 | GO:0009840: chloroplastic endopeptidase Clp complex | 2.74E-03 |
| 36 | GO:0031305: integral component of mitochondrial inner membrane | 3.74E-03 |
| 37 | GO:0046930: pore complex | 4.29E-03 |
| 38 | GO:0015934: large ribosomal subunit | 4.55E-03 |
| 39 | GO:0005763: mitochondrial small ribosomal subunit | 4.85E-03 |
| 40 | GO:0042644: chloroplast nucleoid | 4.85E-03 |
| 41 | GO:0045298: tubulin complex | 4.85E-03 |
| 42 | GO:0022626: cytosolic ribosome | 7.30E-03 |
| 43 | GO:0000312: plastid small ribosomal subunit | 8.75E-03 |
| 44 | GO:0031969: chloroplast membrane | 8.86E-03 |
| 45 | GO:0009654: photosystem II oxygen evolving complex | 1.18E-02 |
| 46 | GO:0015935: small ribosomal subunit | 1.26E-02 |
| 47 | GO:0009532: plastid stroma | 1.26E-02 |
| 48 | GO:0015629: actin cytoskeleton | 1.43E-02 |
| 49 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 1.52E-02 |
| 50 | GO:0005759: mitochondrial matrix | 1.95E-02 |
| 51 | GO:0019898: extrinsic component of membrane | 1.98E-02 |
| 52 | GO:0030529: intracellular ribonucleoprotein complex | 2.70E-02 |
| 53 | GO:0009707: chloroplast outer membrane | 3.27E-02 |