Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G43460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
2GO:0090239: regulation of histone H4 acetylation0.00E+00
3GO:0000740: nuclear membrane fusion0.00E+00
4GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
5GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
6GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
7GO:0046487: glyoxylate metabolic process0.00E+00
8GO:0007530: sex determination0.00E+00
9GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
10GO:0006412: translation6.95E-158
11GO:0042254: ribosome biogenesis6.66E-64
12GO:0000027: ribosomal large subunit assembly3.79E-11
13GO:0000028: ribosomal small subunit assembly2.24E-08
14GO:0006626: protein targeting to mitochondrion7.79E-07
15GO:0006511: ubiquitin-dependent protein catabolic process2.09E-06
16GO:0009735: response to cytokinin8.52E-06
17GO:0009955: adaxial/abaxial pattern specification3.07E-05
18GO:0002181: cytoplasmic translation7.27E-05
19GO:1902626: assembly of large subunit precursor of preribosome7.27E-05
20GO:0000387: spliceosomal snRNP assembly1.62E-04
21GO:0006414: translational elongation2.63E-04
22GO:0006820: anion transport3.06E-04
23GO:0000398: mRNA splicing, via spliceosome3.24E-04
24GO:0043248: proteasome assembly5.30E-04
25GO:0045040: protein import into mitochondrial outer membrane5.30E-04
26GO:0051603: proteolysis involved in cellular protein catabolic process6.34E-04
27GO:0006475: internal protein amino acid acetylation7.28E-04
28GO:0015801: aromatic amino acid transport7.28E-04
29GO:0017198: N-terminal peptidyl-serine acetylation7.28E-04
30GO:0030490: maturation of SSU-rRNA7.28E-04
31GO:2001006: regulation of cellulose biosynthetic process7.28E-04
32GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.28E-04
33GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.28E-04
34GO:0018002: N-terminal peptidyl-glutamic acid acetylation7.28E-04
35GO:0032365: intracellular lipid transport7.28E-04
36GO:0006407: rRNA export from nucleus7.28E-04
37GO:0061077: chaperone-mediated protein folding8.47E-04
38GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c8.94E-04
39GO:0009651: response to salt stress1.05E-03
40GO:0000413: protein peptidyl-prolyl isomerization1.44E-03
41GO:0006432: phenylalanyl-tRNA aminoacylation1.57E-03
42GO:0045905: positive regulation of translational termination1.57E-03
43GO:0071668: plant-type cell wall assembly1.57E-03
44GO:0045901: positive regulation of translational elongation1.57E-03
45GO:0045041: protein import into mitochondrial intermembrane space1.57E-03
46GO:0048569: post-embryonic animal organ development1.57E-03
47GO:0043981: histone H4-K5 acetylation1.57E-03
48GO:0006452: translational frameshifting1.57E-03
49GO:0010198: synergid death1.57E-03
50GO:0051788: response to misfolded protein1.57E-03
51GO:0015786: UDP-glucose transport1.57E-03
52GO:0098656: anion transmembrane transport1.62E-03
53GO:0009245: lipid A biosynthetic process1.62E-03
54GO:0009965: leaf morphogenesis2.14E-03
55GO:0046686: response to cadmium ion2.55E-03
56GO:0009150: purine ribonucleotide metabolic process2.60E-03
57GO:0045793: positive regulation of cell size2.60E-03
58GO:0015783: GDP-fucose transport2.60E-03
59GO:0034227: tRNA thio-modification2.60E-03
60GO:0042256: mature ribosome assembly2.60E-03
61GO:0090506: axillary shoot meristem initiation2.60E-03
62GO:0010452: histone H3-K36 methylation2.60E-03
63GO:1904278: positive regulation of wax biosynthetic process2.60E-03
64GO:0009793: embryo development ending in seed dormancy3.53E-03
65GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.59E-03
66GO:0006168: adenine salvage3.78E-03
67GO:0009558: embryo sac cellularization3.78E-03
68GO:0032877: positive regulation of DNA endoreduplication3.78E-03
69GO:0046836: glycolipid transport3.78E-03
70GO:0006166: purine ribonucleoside salvage3.78E-03
71GO:0070301: cellular response to hydrogen peroxide3.78E-03
72GO:0051085: chaperone mediated protein folding requiring cofactor3.78E-03
73GO:0006241: CTP biosynthetic process3.78E-03
74GO:0072334: UDP-galactose transmembrane transport3.78E-03
75GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.78E-03
76GO:0009647: skotomorphogenesis3.78E-03
77GO:0006165: nucleoside diphosphate phosphorylation3.78E-03
78GO:0006228: UTP biosynthetic process3.78E-03
79GO:0006164: purine nucleotide biosynthetic process3.78E-03
80GO:0006446: regulation of translational initiation3.85E-03
81GO:2000032: regulation of secondary shoot formation5.10E-03
82GO:0009165: nucleotide biosynthetic process5.10E-03
83GO:0051781: positive regulation of cell division5.10E-03
84GO:0042274: ribosomal small subunit biogenesis5.10E-03
85GO:0006183: GTP biosynthetic process5.10E-03
86GO:0010363: regulation of plant-type hypersensitive response5.10E-03
87GO:0006621: protein retention in ER lumen5.10E-03
88GO:0006289: nucleotide-excision repair5.36E-03
89GO:0006487: protein N-linked glycosylation5.36E-03
90GO:0009116: nucleoside metabolic process5.36E-03
91GO:0030150: protein import into mitochondrial matrix5.36E-03
92GO:1902183: regulation of shoot apical meristem development6.57E-03
93GO:0044209: AMP salvage6.57E-03
94GO:0006574: valine catabolic process8.16E-03
95GO:0001731: formation of translation preinitiation complex8.16E-03
96GO:0051568: histone H3-K4 methylation8.16E-03
97GO:0000470: maturation of LSU-rRNA8.16E-03
98GO:0098655: cation transmembrane transport9.88E-03
99GO:0009554: megasporogenesis9.88E-03
100GO:1901001: negative regulation of response to salt stress9.88E-03
101GO:0000911: cytokinesis by cell plate formation9.88E-03
102GO:0042026: protein refolding9.88E-03
103GO:0006458: 'de novo' protein folding9.88E-03
104GO:0000054: ribosomal subunit export from nucleus9.88E-03
105GO:0006413: translational initiation1.01E-02
106GO:0032880: regulation of protein localization1.17E-02
107GO:0048528: post-embryonic root development1.17E-02
108GO:0031540: regulation of anthocyanin biosynthetic process1.37E-02
109GO:0009690: cytokinin metabolic process1.37E-02
110GO:0010204: defense response signaling pathway, resistance gene-independent1.57E-02
111GO:0043562: cellular response to nitrogen levels1.57E-02
112GO:0009808: lignin metabolic process1.57E-02
113GO:0022900: electron transport chain1.57E-02
114GO:0006189: 'de novo' IMP biosynthetic process1.79E-02
115GO:0048589: developmental growth1.79E-02
116GO:0009060: aerobic respiration1.79E-02
117GO:0015780: nucleotide-sugar transport1.79E-02
118GO:0015031: protein transport2.06E-02
119GO:0043069: negative regulation of programmed cell death2.25E-02
120GO:0016441: posttranscriptional gene silencing2.25E-02
121GO:0010015: root morphogenesis2.49E-02
122GO:0006913: nucleocytoplasmic transport2.49E-02
123GO:0015770: sucrose transport2.49E-02
124GO:0016925: protein sumoylation2.75E-02
125GO:0006790: sulfur compound metabolic process2.75E-02
126GO:0010043: response to zinc ion2.94E-02
127GO:0009910: negative regulation of flower development2.94E-02
128GO:2000028: regulation of photoperiodism, flowering3.01E-02
129GO:0010102: lateral root morphogenesis3.01E-02
130GO:0010628: positive regulation of gene expression3.01E-02
131GO:0048467: gynoecium development3.28E-02
132GO:0010039: response to iron ion3.56E-02
133GO:0006406: mRNA export from nucleus4.14E-02
134GO:0008283: cell proliferation4.14E-02
135GO:0000209: protein polyubiquitination4.31E-02
136GO:0009644: response to high light intensity4.48E-02
137GO:0003333: amino acid transmembrane transport4.75E-02
138GO:0015992: proton transport4.75E-02
139GO:0051260: protein homooligomerization4.75E-02
140GO:0010431: seed maturation4.75E-02
141GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process5.00E-02
RankGO TermAdjusted P value
1GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
2GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
3GO:0003735: structural constituent of ribosome4.80E-201
4GO:0003729: mRNA binding1.30E-32
5GO:0019843: rRNA binding9.51E-17
6GO:0004298: threonine-type endopeptidase activity1.75E-12
7GO:0008233: peptidase activity6.01E-06
8GO:0015288: porin activity6.82E-05
9GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.17E-05
10GO:0008308: voltage-gated anion channel activity9.43E-05
11GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.28E-04
12GO:0008097: 5S rRNA binding1.51E-04
13GO:0001055: RNA polymerase II activity1.62E-04
14GO:0003746: translation elongation factor activity2.09E-04
15GO:0001054: RNA polymerase I activity2.52E-04
16GO:0004576: oligosaccharyl transferase activity2.54E-04
17GO:0001056: RNA polymerase III activity3.06E-04
18GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity3.81E-04
19GO:0031177: phosphopantetheine binding5.30E-04
20GO:0000035: acyl binding7.00E-04
21GO:0005080: protein kinase C binding7.28E-04
22GO:0035614: snRNA stem-loop binding7.28E-04
23GO:1990189: peptide-serine-N-acetyltransferase activity7.28E-04
24GO:1990190: peptide-glutamate-N-acetyltransferase activity7.28E-04
25GO:0008121: ubiquinol-cytochrome-c reductase activity8.94E-04
26GO:0043022: ribosome binding1.11E-03
27GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.11E-03
28GO:0030619: U1 snRNA binding1.57E-03
29GO:0015173: aromatic amino acid transmembrane transporter activity1.57E-03
30GO:0032934: sterol binding1.57E-03
31GO:0004826: phenylalanine-tRNA ligase activity1.57E-03
32GO:0005457: GDP-fucose transmembrane transporter activity2.60E-03
33GO:0070180: large ribosomal subunit rRNA binding2.60E-03
34GO:0005047: signal recognition particle binding2.60E-03
35GO:0070181: small ribosomal subunit rRNA binding2.60E-03
36GO:0044183: protein binding involved in protein folding2.61E-03
37GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.83E-03
38GO:0015266: protein channel activity3.40E-03
39GO:0022890: inorganic cation transmembrane transporter activity3.78E-03
40GO:0005460: UDP-glucose transmembrane transporter activity3.78E-03
41GO:0004550: nucleoside diphosphate kinase activity3.78E-03
42GO:0047627: adenylylsulfatase activity3.78E-03
43GO:0017089: glycolipid transporter activity3.78E-03
44GO:0004749: ribose phosphate diphosphokinase activity3.78E-03
45GO:0003999: adenine phosphoribosyltransferase activity3.78E-03
46GO:0016004: phospholipase activator activity5.10E-03
47GO:0010011: auxin binding5.10E-03
48GO:0051861: glycolipid binding5.10E-03
49GO:0046923: ER retention sequence binding5.10E-03
50GO:0070628: proteasome binding5.10E-03
51GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances5.10E-03
52GO:0005528: FK506 binding5.36E-03
53GO:0031386: protein tag6.57E-03
54GO:0005459: UDP-galactose transmembrane transporter activity6.57E-03
55GO:0005275: amine transmembrane transporter activity6.57E-03
56GO:0031593: polyubiquitin binding8.16E-03
57GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity8.16E-03
58GO:0019887: protein kinase regulator activity9.88E-03
59GO:0051920: peroxiredoxin activity9.88E-03
60GO:0005338: nucleotide-sugar transmembrane transporter activity1.17E-02
61GO:0042162: telomeric DNA binding1.17E-02
62GO:0004872: receptor activity1.25E-02
63GO:0016209: antioxidant activity1.37E-02
64GO:0003743: translation initiation factor activity1.43E-02
65GO:0003723: RNA binding1.97E-02
66GO:0051082: unfolded protein binding2.04E-02
67GO:0008515: sucrose transmembrane transporter activity2.49E-02
68GO:0004129: cytochrome-c oxidase activity2.49E-02
69GO:0008794: arsenate reductase (glutaredoxin) activity2.49E-02
70GO:0046961: proton-transporting ATPase activity, rotational mechanism2.49E-02
71GO:0000049: tRNA binding2.75E-02
72GO:0050897: cobalt ion binding2.94E-02
73GO:0031072: heat shock protein binding3.01E-02
74GO:0051119: sugar transmembrane transporter activity3.56E-02
75GO:0043130: ubiquitin binding4.14E-02
76GO:0004540: ribonuclease activity4.75E-02
RankGO TermAdjusted P value
1GO:0043186: P granule0.00E+00
2GO:0005675: holo TFIIH complex0.00E+00
3GO:0097361: CIA complex0.00E+00
4GO:0005840: ribosome9.77E-142
5GO:0022626: cytosolic ribosome1.87E-135
6GO:0022625: cytosolic large ribosomal subunit1.03E-118
7GO:0022627: cytosolic small ribosomal subunit2.35E-88
8GO:0005829: cytosol3.40E-47
9GO:0005737: cytoplasm7.82E-41
10GO:0005730: nucleolus8.64E-34
11GO:0009506: plasmodesma7.15E-24
12GO:0005774: vacuolar membrane1.32E-19
13GO:0015934: large ribosomal subunit1.17E-16
14GO:0000502: proteasome complex4.10E-13
15GO:0005839: proteasome core complex1.75E-12
16GO:0005773: vacuole5.23E-12
17GO:0016020: membrane2.25E-11
18GO:0015935: small ribosomal subunit4.47E-09
19GO:0005618: cell wall7.89E-08
20GO:0019773: proteasome core complex, alpha-subunit complex2.81E-06
21GO:0005742: mitochondrial outer membrane translocase complex2.81E-06
22GO:0005732: small nucleolar ribonucleoprotein complex5.45E-06
23GO:0009507: chloroplast1.43E-05
24GO:0005665: DNA-directed RNA polymerase II, core complex1.79E-05
25GO:0019013: viral nucleocapsid2.36E-05
26GO:0000419: DNA-directed RNA polymerase V complex4.86E-05
27GO:0005853: eukaryotic translation elongation factor 1 complex7.27E-05
28GO:0005741: mitochondrial outer membrane8.73E-05
29GO:0046930: pore complex9.43E-05
30GO:0005736: DNA-directed RNA polymerase I complex1.26E-04
31GO:0005666: DNA-directed RNA polymerase III complex1.62E-04
32GO:0008250: oligosaccharyltransferase complex3.81E-04
33GO:0072546: ER membrane protein complex7.28E-04
34GO:0030686: 90S preribosome7.28E-04
35GO:0005681: spliceosomal complex8.05E-04
36GO:0005886: plasma membrane8.15E-04
37GO:0005747: mitochondrial respiratory chain complex I8.52E-04
38GO:0035145: exon-exon junction complex1.57E-03
39GO:0031415: NatA complex1.57E-03
40GO:0005697: telomerase holoenzyme complex1.57E-03
41GO:0005685: U1 snRNP1.62E-03
42GO:0071011: precatalytic spliceosome1.92E-03
43GO:0000418: DNA-directed RNA polymerase IV complex2.25E-03
44GO:0034719: SMN-Sm protein complex2.60E-03
45GO:0000439: core TFIIH complex2.60E-03
46GO:0008541: proteasome regulatory particle, lid subcomplex2.61E-03
47GO:0071013: catalytic step 2 spliceosome2.61E-03
48GO:0005622: intracellular3.39E-03
49GO:0005788: endoplasmic reticulum lumen3.61E-03
50GO:0033180: proton-transporting V-type ATPase, V1 domain3.78E-03
51GO:1990726: Lsm1-7-Pat1 complex3.78E-03
52GO:0005750: mitochondrial respiratory chain complex III3.85E-03
53GO:0016471: vacuolar proton-transporting V-type ATPase complex5.10E-03
54GO:0016593: Cdc73/Paf1 complex5.10E-03
55GO:0005682: U5 snRNP5.10E-03
56GO:0005758: mitochondrial intermembrane space5.36E-03
57GO:0070469: respiratory chain5.92E-03
58GO:0005687: U4 snRNP6.57E-03
59GO:0097526: spliceosomal tri-snRNP complex6.57E-03
60GO:0005746: mitochondrial respiratory chain6.57E-03
61GO:0016282: eukaryotic 43S preinitiation complex8.16E-03
62GO:0033290: eukaryotic 48S preinitiation complex9.88E-03
63GO:0005689: U12-type spliceosomal complex9.88E-03
64GO:0016272: prefoldin complex9.88E-03
65GO:0005762: mitochondrial large ribosomal subunit9.88E-03
66GO:0071004: U2-type prespliceosome1.37E-02
67GO:0045273: respiratory chain complex II1.37E-02
68GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.37E-02
69GO:0005688: U6 snRNP1.37E-02
70GO:0046540: U4/U6 x U5 tri-snRNP complex1.57E-02
71GO:0031901: early endosome membrane1.79E-02
72GO:0015030: Cajal body2.01E-02
73GO:0005686: U2 snRNP2.25E-02
74GO:0005740: mitochondrial envelope2.25E-02
75GO:0005852: eukaryotic translation initiation factor 3 complex2.49E-02
76GO:0005783: endoplasmic reticulum2.55E-02
77GO:0031307: integral component of mitochondrial outer membrane2.75E-02
78GO:0009508: plastid chromosome3.01E-02
79GO:0005769: early endosome3.85E-02
80GO:0045271: respiratory chain complex I4.44E-02
81GO:0005743: mitochondrial inner membrane4.73E-02
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Gene type



Gene DE type