GO Enrichment Analysis of Co-expressed Genes with
AT2G43360
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0006114: glycerol biosynthetic process | 0.00E+00 |
| 3 | GO:1904966: positive regulation of vitamin E biosynthetic process | 7.07E-05 |
| 4 | GO:1904964: positive regulation of phytol biosynthetic process | 7.07E-05 |
| 5 | GO:0009658: chloroplast organization | 1.20E-04 |
| 6 | GO:0001736: establishment of planar polarity | 1.70E-04 |
| 7 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.70E-04 |
| 8 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.70E-04 |
| 9 | GO:0015979: photosynthesis | 2.17E-04 |
| 10 | GO:2001141: regulation of RNA biosynthetic process | 4.15E-04 |
| 11 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 4.15E-04 |
| 12 | GO:0016558: protein import into peroxisome matrix | 7.00E-04 |
| 13 | GO:0006564: L-serine biosynthetic process | 7.00E-04 |
| 14 | GO:0010190: cytochrome b6f complex assembly | 8.57E-04 |
| 15 | GO:0032973: amino acid export | 8.57E-04 |
| 16 | GO:0016311: dephosphorylation | 8.75E-04 |
| 17 | GO:1901259: chloroplast rRNA processing | 1.02E-03 |
| 18 | GO:0009772: photosynthetic electron transport in photosystem II | 1.19E-03 |
| 19 | GO:0043090: amino acid import | 1.19E-03 |
| 20 | GO:0000105: histidine biosynthetic process | 1.37E-03 |
| 21 | GO:0009231: riboflavin biosynthetic process | 1.37E-03 |
| 22 | GO:0048564: photosystem I assembly | 1.37E-03 |
| 23 | GO:0042255: ribosome assembly | 1.37E-03 |
| 24 | GO:0006353: DNA-templated transcription, termination | 1.37E-03 |
| 25 | GO:0017004: cytochrome complex assembly | 1.56E-03 |
| 26 | GO:0071482: cellular response to light stimulus | 1.56E-03 |
| 27 | GO:0080144: amino acid homeostasis | 1.76E-03 |
| 28 | GO:0000373: Group II intron splicing | 1.76E-03 |
| 29 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 2.19E-03 |
| 30 | GO:0048829: root cap development | 2.19E-03 |
| 31 | GO:1903507: negative regulation of nucleic acid-templated transcription | 2.41E-03 |
| 32 | GO:0006352: DNA-templated transcription, initiation | 2.41E-03 |
| 33 | GO:0048765: root hair cell differentiation | 2.41E-03 |
| 34 | GO:0009773: photosynthetic electron transport in photosystem I | 2.41E-03 |
| 35 | GO:0010020: chloroplast fission | 3.12E-03 |
| 36 | GO:0000162: tryptophan biosynthetic process | 3.63E-03 |
| 37 | GO:0003333: amino acid transmembrane transport | 4.44E-03 |
| 38 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 4.73E-03 |
| 39 | GO:0009451: RNA modification | 4.87E-03 |
| 40 | GO:0008380: RNA splicing | 5.68E-03 |
| 41 | GO:0008033: tRNA processing | 5.93E-03 |
| 42 | GO:0000413: protein peptidyl-prolyl isomerization | 5.93E-03 |
| 43 | GO:0009958: positive gravitropism | 6.24E-03 |
| 44 | GO:0048868: pollen tube development | 6.24E-03 |
| 45 | GO:0015986: ATP synthesis coupled proton transport | 6.56E-03 |
| 46 | GO:0007018: microtubule-based movement | 6.56E-03 |
| 47 | GO:0006814: sodium ion transport | 6.56E-03 |
| 48 | GO:0006635: fatty acid beta-oxidation | 7.22E-03 |
| 49 | GO:0010193: response to ozone | 7.22E-03 |
| 50 | GO:0016032: viral process | 7.56E-03 |
| 51 | GO:0032502: developmental process | 7.56E-03 |
| 52 | GO:0018298: protein-chromophore linkage | 1.13E-02 |
| 53 | GO:0009817: defense response to fungus, incompatible interaction | 1.13E-02 |
| 54 | GO:0010311: lateral root formation | 1.17E-02 |
| 55 | GO:0006865: amino acid transport | 1.29E-02 |
| 56 | GO:0016042: lipid catabolic process | 1.31E-02 |
| 57 | GO:0009637: response to blue light | 1.33E-02 |
| 58 | GO:0009867: jasmonic acid mediated signaling pathway | 1.33E-02 |
| 59 | GO:0010114: response to red light | 1.59E-02 |
| 60 | GO:0009926: auxin polar transport | 1.59E-02 |
| 61 | GO:0006810: transport | 1.78E-02 |
| 62 | GO:0031347: regulation of defense response | 1.82E-02 |
| 63 | GO:0010224: response to UV-B | 2.01E-02 |
| 64 | GO:0048316: seed development | 2.26E-02 |
| 65 | GO:0009611: response to wounding | 2.46E-02 |
| 66 | GO:0009553: embryo sac development | 2.47E-02 |
| 67 | GO:0009624: response to nematode | 2.53E-02 |
| 68 | GO:0006412: translation | 2.77E-02 |
| 69 | GO:0006952: defense response | 3.03E-02 |
| 70 | GO:0006457: protein folding | 3.11E-02 |
| 71 | GO:0009793: embryo development ending in seed dormancy | 3.14E-02 |
| 72 | GO:0009790: embryo development | 3.31E-02 |
| 73 | GO:0007166: cell surface receptor signaling pathway | 4.10E-02 |
| 74 | GO:0071555: cell wall organization | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity | 0.00E+00 |
| 2 | GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity | 0.00E+00 |
| 3 | GO:0043136: glycerol-3-phosphatase activity | 0.00E+00 |
| 4 | GO:0000121: glycerol-1-phosphatase activity | 0.00E+00 |
| 5 | GO:0042623: ATPase activity, coupled | 0.00E+00 |
| 6 | GO:0019843: rRNA binding | 2.89E-05 |
| 7 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.48E-04 |
| 8 | GO:0004617: phosphoglycerate dehydrogenase activity | 1.70E-04 |
| 9 | GO:0008508: bile acid:sodium symporter activity | 4.15E-04 |
| 10 | GO:0001053: plastid sigma factor activity | 5.53E-04 |
| 11 | GO:0010011: auxin binding | 5.53E-04 |
| 12 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 5.53E-04 |
| 13 | GO:0004045: aminoacyl-tRNA hydrolase activity | 5.53E-04 |
| 14 | GO:0016987: sigma factor activity | 5.53E-04 |
| 15 | GO:0010328: auxin influx transmembrane transporter activity | 5.53E-04 |
| 16 | GO:0043495: protein anchor | 5.53E-04 |
| 17 | GO:0008195: phosphatidate phosphatase activity | 1.02E-03 |
| 18 | GO:0019899: enzyme binding | 1.19E-03 |
| 19 | GO:0003993: acid phosphatase activity | 1.20E-03 |
| 20 | GO:0015171: amino acid transmembrane transporter activity | 2.17E-03 |
| 21 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 3.12E-03 |
| 22 | GO:0005528: FK506 binding | 3.89E-03 |
| 23 | GO:0003714: transcription corepressor activity | 3.89E-03 |
| 24 | GO:0043424: protein histidine kinase binding | 4.17E-03 |
| 25 | GO:0022891: substrate-specific transmembrane transporter activity | 5.02E-03 |
| 26 | GO:0003727: single-stranded RNA binding | 5.32E-03 |
| 27 | GO:0042802: identical protein binding | 6.05E-03 |
| 28 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 6.24E-03 |
| 29 | GO:0048038: quinone binding | 7.22E-03 |
| 30 | GO:0016788: hydrolase activity, acting on ester bonds | 7.50E-03 |
| 31 | GO:0016597: amino acid binding | 8.97E-03 |
| 32 | GO:0016168: chlorophyll binding | 9.71E-03 |
| 33 | GO:0052689: carboxylic ester hydrolase activity | 1.01E-02 |
| 34 | GO:0004519: endonuclease activity | 1.47E-02 |
| 35 | GO:0015293: symporter activity | 1.73E-02 |
| 36 | GO:0005198: structural molecule activity | 1.73E-02 |
| 37 | GO:0051287: NAD binding | 1.82E-02 |
| 38 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.97E-02 |
| 39 | GO:0003690: double-stranded DNA binding | 2.01E-02 |
| 40 | GO:0016887: ATPase activity | 2.10E-02 |
| 41 | GO:0003777: microtubule motor activity | 2.11E-02 |
| 42 | GO:0004650: polygalacturonase activity | 2.37E-02 |
| 43 | GO:0003735: structural constituent of ribosome | 2.60E-02 |
| 44 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.17E-02 |
| 45 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 3.55E-02 |
| 46 | GO:0008017: microtubule binding | 3.85E-02 |
| 47 | GO:0005525: GTP binding | 3.94E-02 |
| 48 | GO:0005509: calcium ion binding | 4.47E-02 |
| 49 | GO:0008168: methyltransferase activity | 4.95E-02 |
| 50 | GO:0003723: RNA binding | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009349: riboflavin synthase complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.37E-14 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 4.84E-10 |
| 4 | GO:0009543: chloroplast thylakoid lumen | 3.20E-08 |
| 5 | GO:0042651: thylakoid membrane | 5.22E-06 |
| 6 | GO:0009570: chloroplast stroma | 1.15E-05 |
| 7 | GO:0030095: chloroplast photosystem II | 1.41E-04 |
| 8 | GO:0009579: thylakoid | 1.73E-04 |
| 9 | GO:0009654: photosystem II oxygen evolving complex | 2.22E-04 |
| 10 | GO:0042646: plastid nucleoid | 4.15E-04 |
| 11 | GO:0019898: extrinsic component of membrane | 4.67E-04 |
| 12 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 8.57E-04 |
| 13 | GO:0009534: chloroplast thylakoid | 1.05E-03 |
| 14 | GO:0009986: cell surface | 1.19E-03 |
| 15 | GO:0009533: chloroplast stromal thylakoid | 1.19E-03 |
| 16 | GO:0005874: microtubule | 1.27E-03 |
| 17 | GO:0031977: thylakoid lumen | 1.36E-03 |
| 18 | GO:0009538: photosystem I reaction center | 1.37E-03 |
| 19 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.76E-03 |
| 20 | GO:0042644: chloroplast nucleoid | 1.76E-03 |
| 21 | GO:0009941: chloroplast envelope | 1.97E-03 |
| 22 | GO:0009505: plant-type cell wall | 3.24E-03 |
| 23 | GO:0010287: plastoglobule | 3.28E-03 |
| 24 | GO:0009532: plastid stroma | 4.44E-03 |
| 25 | GO:0005871: kinesin complex | 5.62E-03 |
| 26 | GO:0046658: anchored component of plasma membrane | 6.30E-03 |
| 27 | GO:0009523: photosystem II | 6.89E-03 |
| 28 | GO:0031225: anchored component of membrane | 7.83E-03 |
| 29 | GO:0005778: peroxisomal membrane | 8.61E-03 |
| 30 | GO:0010319: stromule | 8.61E-03 |
| 31 | GO:0030529: intracellular ribonucleoprotein complex | 9.34E-03 |
| 32 | GO:0005840: ribosome | 1.16E-02 |
| 33 | GO:0015934: large ribosomal subunit | 1.25E-02 |
| 34 | GO:0016020: membrane | 1.87E-02 |