GO Enrichment Analysis of Co-expressed Genes with
AT2G43340
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0018293: protein-FAD linkage | 0.00E+00 |
| 2 | GO:0034553: mitochondrial respiratory chain complex II assembly | 0.00E+00 |
| 3 | GO:0080094: response to trehalose-6-phosphate | 0.00E+00 |
| 4 | GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene | 0.00E+00 |
| 5 | GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) | 0.00E+00 |
| 6 | GO:0009661: chromoplast organization | 0.00E+00 |
| 7 | GO:0019878: lysine biosynthetic process via aminoadipic acid | 0.00E+00 |
| 8 | GO:0018215: protein phosphopantetheinylation | 0.00E+00 |
| 9 | GO:0016120: carotene biosynthetic process | 1.20E-05 |
| 10 | GO:0080065: 4-alpha-methyl-delta7-sterol oxidation | 8.78E-05 |
| 11 | GO:0006285: base-excision repair, AP site formation | 8.78E-05 |
| 12 | GO:1903409: reactive oxygen species biosynthetic process | 8.78E-05 |
| 13 | GO:0006169: adenosine salvage | 8.78E-05 |
| 14 | GO:0048438: floral whorl development | 8.78E-05 |
| 15 | GO:0000103: sulfate assimilation | 1.06E-04 |
| 16 | GO:0007154: cell communication | 2.08E-04 |
| 17 | GO:0010220: positive regulation of vernalization response | 2.08E-04 |
| 18 | GO:1904143: positive regulation of carotenoid biosynthetic process | 2.08E-04 |
| 19 | GO:0080183: response to photooxidative stress | 2.08E-04 |
| 20 | GO:0043100: pyrimidine nucleobase salvage | 2.08E-04 |
| 21 | GO:0019419: sulfate reduction | 3.48E-04 |
| 22 | GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion | 3.48E-04 |
| 23 | GO:1901562: response to paraquat | 3.48E-04 |
| 24 | GO:0016570: histone modification | 3.48E-04 |
| 25 | GO:0009741: response to brassinosteroid | 5.37E-04 |
| 26 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 6.59E-04 |
| 27 | GO:0010600: regulation of auxin biosynthetic process | 6.66E-04 |
| 28 | GO:0009902: chloroplast relocation | 6.66E-04 |
| 29 | GO:0010021: amylopectin biosynthetic process | 6.66E-04 |
| 30 | GO:0006646: phosphatidylethanolamine biosynthetic process | 6.66E-04 |
| 31 | GO:0070534: protein K63-linked ubiquitination | 6.66E-04 |
| 32 | GO:0044209: AMP salvage | 8.44E-04 |
| 33 | GO:0009739: response to gibberellin | 9.73E-04 |
| 34 | GO:0006555: methionine metabolic process | 1.03E-03 |
| 35 | GO:0070814: hydrogen sulfide biosynthetic process | 1.03E-03 |
| 36 | GO:0000060: protein import into nucleus, translocation | 1.03E-03 |
| 37 | GO:0010190: cytochrome b6f complex assembly | 1.03E-03 |
| 38 | GO:0006121: mitochondrial electron transport, succinate to ubiquinone | 1.03E-03 |
| 39 | GO:0006301: postreplication repair | 1.03E-03 |
| 40 | GO:0010077: maintenance of inflorescence meristem identity | 1.23E-03 |
| 41 | GO:0019509: L-methionine salvage from methylthioadenosine | 1.23E-03 |
| 42 | GO:0010076: maintenance of floral meristem identity | 1.23E-03 |
| 43 | GO:0017148: negative regulation of translation | 1.23E-03 |
| 44 | GO:0006368: transcription elongation from RNA polymerase II promoter | 1.44E-03 |
| 45 | GO:0050790: regulation of catalytic activity | 1.44E-03 |
| 46 | GO:0030091: protein repair | 1.66E-03 |
| 47 | GO:0050821: protein stabilization | 1.66E-03 |
| 48 | GO:0009231: riboflavin biosynthetic process | 1.66E-03 |
| 49 | GO:0015996: chlorophyll catabolic process | 1.89E-03 |
| 50 | GO:0009835: fruit ripening | 2.14E-03 |
| 51 | GO:0045454: cell redox homeostasis | 2.39E-03 |
| 52 | GO:0051555: flavonol biosynthetic process | 2.65E-03 |
| 53 | GO:0009970: cellular response to sulfate starvation | 2.65E-03 |
| 54 | GO:0000272: polysaccharide catabolic process | 2.93E-03 |
| 55 | GO:0010582: floral meristem determinacy | 3.21E-03 |
| 56 | GO:0010152: pollen maturation | 3.21E-03 |
| 57 | GO:0055114: oxidation-reduction process | 4.05E-03 |
| 58 | GO:0019344: cysteine biosynthetic process | 4.74E-03 |
| 59 | GO:0051017: actin filament bundle assembly | 4.74E-03 |
| 60 | GO:0040007: growth | 6.12E-03 |
| 61 | GO:0006284: base-excision repair | 6.48E-03 |
| 62 | GO:0016117: carotenoid biosynthetic process | 6.86E-03 |
| 63 | GO:0080022: primary root development | 7.24E-03 |
| 64 | GO:0006662: glycerol ether metabolic process | 7.62E-03 |
| 65 | GO:0010182: sugar mediated signaling pathway | 7.62E-03 |
| 66 | GO:0019252: starch biosynthetic process | 8.42E-03 |
| 67 | GO:0008654: phospholipid biosynthetic process | 8.42E-03 |
| 68 | GO:0009556: microsporogenesis | 8.42E-03 |
| 69 | GO:0009851: auxin biosynthetic process | 8.42E-03 |
| 70 | GO:0016032: viral process | 9.24E-03 |
| 71 | GO:0006468: protein phosphorylation | 9.33E-03 |
| 72 | GO:0009567: double fertilization forming a zygote and endosperm | 1.01E-02 |
| 73 | GO:0006464: cellular protein modification process | 1.01E-02 |
| 74 | GO:0016126: sterol biosynthetic process | 1.14E-02 |
| 75 | GO:0042128: nitrate assimilation | 1.24E-02 |
| 76 | GO:0015995: chlorophyll biosynthetic process | 1.28E-02 |
| 77 | GO:0010411: xyloglucan metabolic process | 1.28E-02 |
| 78 | GO:0018298: protein-chromophore linkage | 1.38E-02 |
| 79 | GO:0009813: flavonoid biosynthetic process | 1.43E-02 |
| 80 | GO:0006811: ion transport | 1.48E-02 |
| 81 | GO:0009407: toxin catabolic process | 1.48E-02 |
| 82 | GO:0007568: aging | 1.53E-02 |
| 83 | GO:0006099: tricarboxylic acid cycle | 1.68E-02 |
| 84 | GO:0034599: cellular response to oxidative stress | 1.68E-02 |
| 85 | GO:0016042: lipid catabolic process | 1.76E-02 |
| 86 | GO:0009636: response to toxic substance | 2.12E-02 |
| 87 | GO:0006855: drug transmembrane transport | 2.18E-02 |
| 88 | GO:0000165: MAPK cascade | 2.24E-02 |
| 89 | GO:0009809: lignin biosynthetic process | 2.41E-02 |
| 90 | GO:0009585: red, far-red light phototransduction | 2.41E-02 |
| 91 | GO:0006813: potassium ion transport | 2.41E-02 |
| 92 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.47E-02 |
| 93 | GO:0006857: oligopeptide transport | 2.53E-02 |
| 94 | GO:0009740: gibberellic acid mediated signaling pathway | 2.97E-02 |
| 95 | GO:0009742: brassinosteroid mediated signaling pathway | 3.23E-02 |
| 96 | GO:0035556: intracellular signal transduction | 3.38E-02 |
| 97 | GO:0045893: positive regulation of transcription, DNA-templated | 3.68E-02 |
| 98 | GO:0006457: protein folding | 4.14E-02 |
| 99 | GO:0007623: circadian rhythm | 4.58E-02 |
| 100 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016719: carotene 7,8-desaturase activity | 0.00E+00 |
| 2 | GO:0015205: nucleobase transmembrane transporter activity | 0.00E+00 |
| 3 | GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity | 0.00E+00 |
| 4 | GO:0047504: (-)-menthol dehydrogenase activity | 0.00E+00 |
| 5 | GO:0008897: holo-[acyl-carrier-protein] synthase activity | 0.00E+00 |
| 6 | GO:0047501: (+)-neomenthol dehydrogenase activity | 0.00E+00 |
| 7 | GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity | 0.00E+00 |
| 8 | GO:0008106: alcohol dehydrogenase (NADP+) activity | 3.77E-06 |
| 9 | GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity | 8.78E-05 |
| 10 | GO:0001530: lipopolysaccharide binding | 8.78E-05 |
| 11 | GO:0016780: phosphotransferase activity, for other substituted phosphate groups | 8.78E-05 |
| 12 | GO:0010313: phytochrome binding | 8.78E-05 |
| 13 | GO:0004001: adenosine kinase activity | 8.78E-05 |
| 14 | GO:0016783: sulfurtransferase activity | 8.78E-05 |
| 15 | GO:0004307: ethanolaminephosphotransferase activity | 8.78E-05 |
| 16 | GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity | 8.78E-05 |
| 17 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 8.78E-05 |
| 18 | GO:0033201: alpha-1,4-glucan synthase activity | 2.08E-04 |
| 19 | GO:0030572: phosphatidyltransferase activity | 2.08E-04 |
| 20 | GO:0004142: diacylglycerol cholinephosphotransferase activity | 2.08E-04 |
| 21 | GO:0009973: adenylyl-sulfate reductase activity | 2.08E-04 |
| 22 | GO:1990269: RNA polymerase II C-terminal domain phosphoserine binding | 2.08E-04 |
| 23 | GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity | 2.08E-04 |
| 24 | GO:0033741: adenylyl-sulfate reductase (glutathione) activity | 2.08E-04 |
| 25 | GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | 2.08E-04 |
| 26 | GO:0004180: carboxypeptidase activity | 3.48E-04 |
| 27 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 3.48E-04 |
| 28 | GO:0004373: glycogen (starch) synthase activity | 3.48E-04 |
| 29 | GO:0003913: DNA photolyase activity | 3.48E-04 |
| 30 | GO:0003935: GTP cyclohydrolase II activity | 3.48E-04 |
| 31 | GO:0004781: sulfate adenylyltransferase (ATP) activity | 3.48E-04 |
| 32 | GO:0001076: transcription factor activity, RNA polymerase II transcription factor binding | 3.48E-04 |
| 33 | GO:0000254: C-4 methylsterol oxidase activity | 5.01E-04 |
| 34 | GO:0048027: mRNA 5'-UTR binding | 5.01E-04 |
| 35 | GO:0004792: thiosulfate sulfurtransferase activity | 5.01E-04 |
| 36 | GO:0019104: DNA N-glycosylase activity | 6.66E-04 |
| 37 | GO:0009011: starch synthase activity | 6.66E-04 |
| 38 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 7.47E-04 |
| 39 | GO:0008177: succinate dehydrogenase (ubiquinone) activity | 8.44E-04 |
| 40 | GO:0045431: flavonol synthase activity | 8.44E-04 |
| 41 | GO:0004709: MAP kinase kinase kinase activity | 1.03E-03 |
| 42 | GO:0000210: NAD+ diphosphatase activity | 1.03E-03 |
| 43 | GO:2001070: starch binding | 1.03E-03 |
| 44 | GO:0016161: beta-amylase activity | 1.23E-03 |
| 45 | GO:0016621: cinnamoyl-CoA reductase activity | 1.44E-03 |
| 46 | GO:0009881: photoreceptor activity | 1.44E-03 |
| 47 | GO:0004672: protein kinase activity | 1.53E-03 |
| 48 | GO:0015035: protein disulfide oxidoreductase activity | 3.80E-03 |
| 49 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 3.80E-03 |
| 50 | GO:0008324: cation transmembrane transporter activity | 5.07E-03 |
| 51 | GO:0033612: receptor serine/threonine kinase binding | 5.42E-03 |
| 52 | GO:0016491: oxidoreductase activity | 5.44E-03 |
| 53 | GO:0047134: protein-disulfide reductase activity | 6.86E-03 |
| 54 | GO:0004527: exonuclease activity | 7.62E-03 |
| 55 | GO:0004791: thioredoxin-disulfide reductase activity | 8.02E-03 |
| 56 | GO:0010181: FMN binding | 8.02E-03 |
| 57 | GO:0050662: coenzyme binding | 8.02E-03 |
| 58 | GO:0048038: quinone binding | 8.83E-03 |
| 59 | GO:0004518: nuclease activity | 9.24E-03 |
| 60 | GO:0004197: cysteine-type endopeptidase activity | 9.24E-03 |
| 61 | GO:0016788: hydrolase activity, acting on ester bonds | 1.00E-02 |
| 62 | GO:0016413: O-acetyltransferase activity | 1.10E-02 |
| 63 | GO:0061630: ubiquitin protein ligase activity | 1.28E-02 |
| 64 | GO:0030247: polysaccharide binding | 1.28E-02 |
| 65 | GO:0008236: serine-type peptidase activity | 1.33E-02 |
| 66 | GO:0052689: carboxylic ester hydrolase activity | 1.35E-02 |
| 67 | GO:0015238: drug transmembrane transporter activity | 1.43E-02 |
| 68 | GO:0004871: signal transducer activity | 1.53E-02 |
| 69 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.63E-02 |
| 70 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 1.74E-02 |
| 71 | GO:0004364: glutathione transferase activity | 1.90E-02 |
| 72 | GO:0015293: symporter activity | 2.12E-02 |
| 73 | GO:0016298: lipase activity | 2.47E-02 |
| 74 | GO:0008289: lipid binding | 2.52E-02 |
| 75 | GO:0031625: ubiquitin protein ligase binding | 2.60E-02 |
| 76 | GO:0008234: cysteine-type peptidase activity | 2.60E-02 |
| 77 | GO:0046872: metal ion binding | 3.52E-02 |
| 78 | GO:0016740: transferase activity | 3.90E-02 |
| 79 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 3.99E-02 |
| 80 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 4.35E-02 |
| 81 | GO:0015297: antiporter activity | 4.43E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009509: chromoplast | 3.48E-04 |
| 2 | GO:0009507: chloroplast | 4.71E-04 |
| 3 | GO:0031372: UBC13-MMS2 complex | 6.66E-04 |
| 4 | GO:0016593: Cdc73/Paf1 complex | 6.66E-04 |
| 5 | GO:0009526: plastid envelope | 6.66E-04 |
| 6 | GO:0009501: amyloplast | 1.66E-03 |
| 7 | GO:0031969: chloroplast membrane | 1.90E-03 |
| 8 | GO:0042644: chloroplast nucleoid | 2.14E-03 |
| 9 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.14E-03 |
| 10 | GO:0005884: actin filament | 2.93E-03 |
| 11 | GO:0005764: lysosome | 3.80E-03 |
| 12 | GO:0005615: extracellular space | 7.11E-03 |
| 13 | GO:0005829: cytosol | 1.04E-02 |
| 14 | GO:0009535: chloroplast thylakoid membrane | 1.21E-02 |
| 15 | GO:0031977: thylakoid lumen | 1.84E-02 |
| 16 | GO:0005834: heterotrimeric G-protein complex | 2.84E-02 |
| 17 | GO:0016021: integral component of membrane | 2.96E-02 |
| 18 | GO:0010287: plastoglobule | 3.50E-02 |
| 19 | GO:0009543: chloroplast thylakoid lumen | 3.64E-02 |