Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G43180

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032928: regulation of superoxide anion generation0.00E+00
2GO:0018316: peptide cross-linking via L-cystine0.00E+00
3GO:0009583: detection of light stimulus0.00E+00
4GO:0071000: response to magnetism0.00E+00
5GO:0010117: photoprotection4.04E-06
6GO:0034971: histone H3-R17 methylation4.60E-05
7GO:0072387: flavin adenine dinucleotide metabolic process4.60E-05
8GO:0071454: cellular response to anoxia4.60E-05
9GO:0034970: histone H3-R2 methylation4.60E-05
10GO:0034972: histone H3-R26 methylation4.60E-05
11GO:0010617: circadian regulation of calcium ion oscillation1.13E-04
12GO:0099402: plant organ development1.13E-04
13GO:0016122: xanthophyll metabolic process1.13E-04
14GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.13E-04
15GO:0080153: negative regulation of reductive pentose-phosphate cycle1.13E-04
16GO:0010343: singlet oxygen-mediated programmed cell death1.13E-04
17GO:1901529: positive regulation of anion channel activity1.13E-04
18GO:0080005: photosystem stoichiometry adjustment1.13E-04
19GO:0009150: purine ribonucleotide metabolic process1.95E-04
20GO:0006696: ergosterol biosynthetic process1.95E-04
21GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation1.95E-04
22GO:1902448: positive regulation of shade avoidance1.95E-04
23GO:1901672: positive regulation of systemic acquired resistance1.95E-04
24GO:1901332: negative regulation of lateral root development2.85E-04
25GO:0033014: tetrapyrrole biosynthetic process2.85E-04
26GO:1902347: response to strigolactone3.84E-04
27GO:0042274: ribosomal small subunit biogenesis3.84E-04
28GO:0031935: regulation of chromatin silencing3.84E-04
29GO:0046283: anthocyanin-containing compound metabolic process4.88E-04
30GO:0010190: cytochrome b6f complex assembly5.98E-04
31GO:0010304: PSII associated light-harvesting complex II catabolic process5.98E-04
32GO:0016070: RNA metabolic process5.98E-04
33GO:0031053: primary miRNA processing5.98E-04
34GO:1901371: regulation of leaf morphogenesis5.98E-04
35GO:0060918: auxin transport5.98E-04
36GO:0010310: regulation of hydrogen peroxide metabolic process7.13E-04
37GO:0010244: response to low fluence blue light stimulus by blue low-fluence system7.13E-04
38GO:0051510: regulation of unidimensional cell growth8.33E-04
39GO:0080111: DNA demethylation8.33E-04
40GO:0009704: de-etiolation9.57E-04
41GO:0048564: photosystem I assembly9.57E-04
42GO:0045292: mRNA cis splicing, via spliceosome9.57E-04
43GO:0032544: plastid translation1.09E-03
44GO:0022900: electron transport chain1.09E-03
45GO:0006783: heme biosynthetic process1.22E-03
46GO:1900426: positive regulation of defense response to bacterium1.36E-03
47GO:0009638: phototropism1.36E-03
48GO:0006779: porphyrin-containing compound biosynthetic process1.36E-03
49GO:0006535: cysteine biosynthetic process from serine1.51E-03
50GO:0000103: sulfate assimilation1.51E-03
51GO:0009688: abscisic acid biosynthetic process1.51E-03
52GO:0006790: sulfur compound metabolic process1.81E-03
53GO:0010075: regulation of meristem growth1.98E-03
54GO:0009767: photosynthetic electron transport chain1.98E-03
55GO:0009785: blue light signaling pathway1.98E-03
56GO:0034605: cellular response to heat2.14E-03
57GO:0019253: reductive pentose-phosphate cycle2.14E-03
58GO:0000162: tryptophan biosynthetic process2.49E-03
59GO:2000377: regulation of reactive oxygen species metabolic process2.67E-03
60GO:0019344: cysteine biosynthetic process2.67E-03
61GO:0007017: microtubule-based process2.85E-03
62GO:0016226: iron-sulfur cluster assembly3.23E-03
63GO:0016117: carotenoid biosynthetic process3.83E-03
64GO:0070417: cellular response to cold3.83E-03
65GO:0010051: xylem and phloem pattern formation4.04E-03
66GO:0010087: phloem or xylem histogenesis4.04E-03
67GO:0010118: stomatal movement4.04E-03
68GO:0009658: chloroplast organization4.21E-03
69GO:0042752: regulation of circadian rhythm4.47E-03
70GO:0009646: response to absence of light4.47E-03
71GO:0009851: auxin biosynthetic process4.68E-03
72GO:0046777: protein autophosphorylation5.57E-03
73GO:0018298: protein-chromophore linkage7.60E-03
74GO:0010218: response to far red light8.14E-03
75GO:0009637: response to blue light8.96E-03
76GO:0006897: endocytosis1.01E-02
77GO:0010114: response to red light1.07E-02
78GO:0009744: response to sucrose1.07E-02
79GO:0009640: photomorphogenesis1.07E-02
80GO:0009644: response to high light intensity1.13E-02
81GO:0009965: leaf morphogenesis1.16E-02
82GO:0009416: response to light stimulus1.37E-02
83GO:0009909: regulation of flower development1.42E-02
84GO:0006417: regulation of translation1.42E-02
85GO:0000398: mRNA splicing, via spliceosome1.88E-02
86GO:0055114: oxidation-reduction process2.44E-02
87GO:0007623: circadian rhythm2.50E-02
88GO:0009451: RNA modification2.54E-02
89GO:0010228: vegetative to reproductive phase transition of meristem2.59E-02
90GO:0010468: regulation of gene expression2.84E-02
RankGO TermAdjusted P value
1GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
2GO:0046905: phytoene synthase activity0.00E+00
3GO:0071949: FAD binding2.71E-05
4GO:0033984: indole-3-glycerol-phosphate lyase activity4.60E-05
5GO:0004325: ferrochelatase activity4.60E-05
6GO:0051996: squalene synthase activity4.60E-05
7GO:0004310: farnesyl-diphosphate farnesyltransferase activity1.13E-04
8GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.13E-04
9GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.13E-04
10GO:0035241: protein-arginine omega-N monomethyltransferase activity1.13E-04
11GO:0008469: histone-arginine N-methyltransferase activity1.95E-04
12GO:0004180: carboxypeptidase activity1.95E-04
13GO:0032947: protein complex scaffold1.95E-04
14GO:0004848: ureidoglycolate hydrolase activity1.95E-04
15GO:0016491: oxidoreductase activity2.70E-04
16GO:0000339: RNA cap binding2.85E-04
17GO:0009882: blue light photoreceptor activity2.85E-04
18GO:0047627: adenylylsulfatase activity2.85E-04
19GO:0009001: serine O-acetyltransferase activity2.85E-04
20GO:0004834: tryptophan synthase activity3.84E-04
21GO:0016407: acetyltransferase activity4.88E-04
22GO:0004713: protein tyrosine kinase activity1.51E-03
23GO:0051536: iron-sulfur cluster binding2.67E-03
24GO:0004176: ATP-dependent peptidase activity3.04E-03
25GO:0008080: N-acetyltransferase activity4.25E-03
26GO:0048038: quinone binding4.91E-03
27GO:0008237: metallopeptidase activity5.84E-03
28GO:0042803: protein homodimerization activity6.53E-03
29GO:0008236: serine-type peptidase activity7.34E-03
30GO:0005096: GTPase activator activity7.87E-03
31GO:0004222: metalloendopeptidase activity8.14E-03
32GO:0004712: protein serine/threonine/tyrosine kinase activity9.53E-03
33GO:0051537: 2 iron, 2 sulfur cluster binding1.13E-02
34GO:0035091: phosphatidylinositol binding1.13E-02
35GO:0005198: structural molecule activity1.16E-02
36GO:0003777: microtubule motor activity1.42E-02
37GO:0042802: identical protein binding2.97E-02
38GO:0008168: methyltransferase activity3.32E-02
39GO:0046982: protein heterodimerization activity3.37E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.06E-08
2GO:0005845: mRNA cap binding complex4.60E-05
3GO:0005846: nuclear cap binding complex1.13E-04
4GO:0009535: chloroplast thylakoid membrane1.28E-04
5GO:0016605: PML body1.95E-04
6GO:0030286: dynein complex3.84E-04
7GO:0009517: PSII associated light-harvesting complex II3.84E-04
8GO:0055035: plastid thylakoid membrane4.88E-04
9GO:0030140: trans-Golgi network transport vesicle5.98E-04
10GO:0031969: chloroplast membrane6.60E-04
11GO:0000123: histone acetyltransferase complex8.33E-04
12GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.22E-03
13GO:0016604: nuclear body1.36E-03
14GO:0005875: microtubule associated complex2.49E-03
15GO:0043234: protein complex2.49E-03
16GO:0042651: thylakoid membrane2.85E-03
17GO:0009570: chloroplast stroma4.60E-03
18GO:0009536: plastid6.89E-03
19GO:0031966: mitochondrial membrane1.26E-02
20GO:0009534: chloroplast thylakoid1.65E-02
21GO:0010287: plastoglobule1.92E-02
22GO:0009941: chloroplast envelope3.75E-02
23GO:0005743: mitochondrial inner membrane4.98E-02
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Gene type



Gene DE type