Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G43010

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905421: regulation of plant organ morphogenesis0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0030155: regulation of cell adhesion0.00E+00
4GO:0019323: pentose catabolic process0.00E+00
5GO:0000025: maltose catabolic process0.00E+00
6GO:0016553: base conversion or substitution editing0.00E+00
7GO:0090627: plant epidermal cell differentiation0.00E+00
8GO:0090279: regulation of calcium ion import0.00E+00
9GO:0015717: triose phosphate transport0.00E+00
10GO:0018023: peptidyl-lysine trimethylation0.00E+00
11GO:1905177: tracheary element differentiation0.00E+00
12GO:0071474: cellular hyperosmotic response0.00E+00
13GO:0015979: photosynthesis1.43E-06
14GO:0009409: response to cold1.28E-05
15GO:0032544: plastid translation1.98E-05
16GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.86E-05
17GO:0009773: photosynthetic electron transport in photosystem I5.94E-05
18GO:0005983: starch catabolic process7.38E-05
19GO:0010021: amylopectin biosynthetic process8.61E-05
20GO:0009266: response to temperature stimulus1.09E-04
21GO:0031998: regulation of fatty acid beta-oxidation3.75E-04
22GO:0000023: maltose metabolic process3.75E-04
23GO:0006431: methionyl-tRNA aminoacylation3.75E-04
24GO:0005980: glycogen catabolic process3.75E-04
25GO:0043489: RNA stabilization3.75E-04
26GO:0044262: cellular carbohydrate metabolic process3.75E-04
27GO:0080093: regulation of photorespiration3.75E-04
28GO:0005978: glycogen biosynthetic process4.22E-04
29GO:0019252: starch biosynthetic process5.46E-04
30GO:0010206: photosystem II repair6.19E-04
31GO:0005982: starch metabolic process7.31E-04
32GO:0030388: fructose 1,6-bisphosphate metabolic process8.15E-04
33GO:0051262: protein tetramerization8.15E-04
34GO:1904961: quiescent center organization8.15E-04
35GO:0005976: polysaccharide metabolic process8.15E-04
36GO:1901959: positive regulation of cutin biosynthetic process8.15E-04
37GO:0018026: peptidyl-lysine monomethylation8.15E-04
38GO:0031648: protein destabilization8.15E-04
39GO:0010027: thylakoid membrane organization9.47E-04
40GO:0009658: chloroplast organization1.08E-03
41GO:0042254: ribosome biogenesis1.12E-03
42GO:0006094: gluconeogenesis1.27E-03
43GO:0048281: inflorescence morphogenesis1.32E-03
44GO:0006000: fructose metabolic process1.32E-03
45GO:0071367: cellular response to brassinosteroid stimulus1.32E-03
46GO:0006518: peptide metabolic process1.32E-03
47GO:0010623: programmed cell death involved in cell development1.32E-03
48GO:0080055: low-affinity nitrate transport1.32E-03
49GO:1904278: positive regulation of wax biosynthetic process1.32E-03
50GO:0035436: triose phosphate transmembrane transport1.32E-03
51GO:0016050: vesicle organization1.32E-03
52GO:0009631: cold acclimation1.59E-03
53GO:1902358: sulfate transmembrane transport1.91E-03
54GO:0009052: pentose-phosphate shunt, non-oxidative branch1.91E-03
55GO:0010731: protein glutathionylation1.91E-03
56GO:0010148: transpiration1.91E-03
57GO:0006289: nucleotide-excision repair1.97E-03
58GO:0009735: response to cytokinin2.10E-03
59GO:0045454: cell redox homeostasis2.17E-03
60GO:0009768: photosynthesis, light harvesting in photosystem I2.18E-03
61GO:0015976: carbon utilization2.56E-03
62GO:0010023: proanthocyanidin biosynthetic process2.56E-03
63GO:0051322: anaphase2.56E-03
64GO:0009765: photosynthesis, light harvesting2.56E-03
65GO:0006109: regulation of carbohydrate metabolic process2.56E-03
66GO:2000122: negative regulation of stomatal complex development2.56E-03
67GO:0015846: polyamine transport2.56E-03
68GO:0045723: positive regulation of fatty acid biosynthetic process2.56E-03
69GO:0006552: leucine catabolic process2.56E-03
70GO:0010508: positive regulation of autophagy2.56E-03
71GO:0015713: phosphoglycerate transport2.56E-03
72GO:0010037: response to carbon dioxide2.56E-03
73GO:0006808: regulation of nitrogen utilization2.56E-03
74GO:0030245: cellulose catabolic process2.62E-03
75GO:0010017: red or far-red light signaling pathway2.62E-03
76GO:0035428: hexose transmembrane transport2.62E-03
77GO:0009644: response to high light intensity2.72E-03
78GO:0006284: base-excision repair3.11E-03
79GO:0006097: glyoxylate cycle3.28E-03
80GO:0035434: copper ion transmembrane transport3.28E-03
81GO:0006461: protein complex assembly3.28E-03
82GO:0006979: response to oxidative stress3.40E-03
83GO:0046323: glucose import3.92E-03
84GO:0000470: maturation of LSU-rRNA4.05E-03
85GO:0009913: epidermal cell differentiation4.05E-03
86GO:0010190: cytochrome b6f complex assembly4.05E-03
87GO:0009643: photosynthetic acclimation4.05E-03
88GO:0009635: response to herbicide4.05E-03
89GO:0009955: adaxial/abaxial pattern specification4.88E-03
90GO:1901259: chloroplast rRNA processing4.88E-03
91GO:0030163: protein catabolic process5.52E-03
92GO:0070370: cellular heat acclimation5.77E-03
93GO:0008272: sulfate transport5.77E-03
94GO:0009645: response to low light intensity stimulus5.77E-03
95GO:0009769: photosynthesis, light harvesting in photosystem II5.77E-03
96GO:0022904: respiratory electron transport chain5.77E-03
97GO:0010103: stomatal complex morphogenesis5.77E-03
98GO:0006310: DNA recombination5.88E-03
99GO:0030091: protein repair6.70E-03
100GO:0006353: DNA-templated transcription, termination6.70E-03
101GO:0017004: cytochrome complex assembly7.69E-03
102GO:0006002: fructose 6-phosphate metabolic process7.69E-03
103GO:0009827: plant-type cell wall modification7.69E-03
104GO:0001558: regulation of cell growth7.69E-03
105GO:0009657: plastid organization7.69E-03
106GO:0005975: carbohydrate metabolic process8.25E-03
107GO:0015995: chlorophyll biosynthetic process8.27E-03
108GO:0051865: protein autoubiquitination8.73E-03
109GO:0006783: heme biosynthetic process8.73E-03
110GO:0009817: defense response to fungus, incompatible interaction9.17E-03
111GO:0018298: protein-chromophore linkage9.17E-03
112GO:0000160: phosphorelay signal transduction system9.64E-03
113GO:0042761: very long-chain fatty acid biosynthetic process9.82E-03
114GO:0048354: mucilage biosynthetic process involved in seed coat development9.82E-03
115GO:0042742: defense response to bacterium1.00E-02
116GO:0006412: translation1.02E-02
117GO:0010119: regulation of stomatal movement1.06E-02
118GO:0031627: telomeric loop formation1.10E-02
119GO:0006782: protoporphyrinogen IX biosynthetic process1.10E-02
120GO:0048829: root cap development1.10E-02
121GO:0007623: circadian rhythm1.14E-02
122GO:0006281: DNA repair1.18E-02
123GO:0010015: root morphogenesis1.21E-02
124GO:0043085: positive regulation of catalytic activity1.21E-02
125GO:0006415: translational termination1.21E-02
126GO:0009750: response to fructose1.21E-02
127GO:0034599: cellular response to oxidative stress1.22E-02
128GO:0045037: protein import into chloroplast stroma1.34E-02
129GO:0018107: peptidyl-threonine phosphorylation1.46E-02
130GO:0009718: anthocyanin-containing compound biosynthetic process1.46E-02
131GO:0005986: sucrose biosynthetic process1.46E-02
132GO:0010102: lateral root morphogenesis1.46E-02
133GO:0010628: positive regulation of gene expression1.46E-02
134GO:0006108: malate metabolic process1.46E-02
135GO:0006006: glucose metabolic process1.46E-02
136GO:0009887: animal organ morphogenesis1.59E-02
137GO:0006302: double-strand break repair1.59E-02
138GO:0010020: chloroplast fission1.59E-02
139GO:0055114: oxidation-reduction process1.85E-02
140GO:0010025: wax biosynthetic process1.87E-02
141GO:0009944: polarity specification of adaxial/abaxial axis2.01E-02
142GO:0006810: transport2.09E-02
143GO:0006825: copper ion transport2.15E-02
144GO:0051302: regulation of cell division2.15E-02
145GO:0006418: tRNA aminoacylation for protein translation2.15E-02
146GO:0007017: microtubule-based process2.15E-02
147GO:0019915: lipid storage2.30E-02
148GO:0061077: chaperone-mediated protein folding2.30E-02
149GO:0051321: meiotic cell cycle2.30E-02
150GO:0003333: amino acid transmembrane transport2.30E-02
151GO:0019748: secondary metabolic process2.46E-02
152GO:2000022: regulation of jasmonic acid mediated signaling pathway2.46E-02
153GO:0009686: gibberellin biosynthetic process2.62E-02
154GO:0001944: vasculature development2.62E-02
155GO:0010089: xylem development2.78E-02
156GO:0042335: cuticle development3.11E-02
157GO:0006662: glycerol ether metabolic process3.28E-02
158GO:0045892: negative regulation of transcription, DNA-templated3.31E-02
159GO:0009646: response to absence of light3.45E-02
160GO:0048825: cotyledon development3.63E-02
161GO:0006869: lipid transport3.64E-02
162GO:0000302: response to reactive oxygen species3.81E-02
163GO:0048235: pollen sperm cell differentiation3.99E-02
164GO:1901657: glycosyl compound metabolic process4.17E-02
165GO:0071281: cellular response to iron ion4.17E-02
166GO:0006629: lipid metabolic process4.20E-02
167GO:0009790: embryo development4.22E-02
168GO:0008152: metabolic process4.73E-02
169GO:0000910: cytokinesis4.75E-02
170GO:0045490: pectin catabolic process4.98E-02
RankGO TermAdjusted P value
1GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor0.00E+00
2GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
3GO:0004174: electron-transferring-flavoprotein dehydrogenase activity0.00E+00
4GO:0004134: 4-alpha-glucanotransferase activity0.00E+00
5GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
6GO:0048039: ubiquinone binding0.00E+00
7GO:0009899: ent-kaurene synthase activity0.00E+00
8GO:0019843: rRNA binding3.14E-06
9GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor8.61E-05
10GO:0004565: beta-galactosidase activity9.04E-05
11GO:2001070: starch binding1.92E-04
12GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.75E-04
13GO:0005227: calcium activated cation channel activity3.75E-04
14GO:0008184: glycogen phosphorylase activity3.75E-04
15GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.75E-04
16GO:0004645: phosphorylase activity3.75E-04
17GO:0004853: uroporphyrinogen decarboxylase activity3.75E-04
18GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.75E-04
19GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity3.75E-04
20GO:0004825: methionine-tRNA ligase activity3.75E-04
21GO:0048038: quinone binding5.95E-04
22GO:0016868: intramolecular transferase activity, phosphotransferases8.15E-04
23GO:0010297: heteropolysaccharide binding8.15E-04
24GO:0033201: alpha-1,4-glucan synthase activity8.15E-04
25GO:0004750: ribulose-phosphate 3-epimerase activity8.15E-04
26GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.15E-04
27GO:0018708: thiol S-methyltransferase activity8.15E-04
28GO:0003844: 1,4-alpha-glucan branching enzyme activity8.15E-04
29GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity8.15E-04
30GO:0050736: O-malonyltransferase activity8.15E-04
31GO:0008967: phosphoglycolate phosphatase activity8.15E-04
32GO:0047372: acylglycerol lipase activity9.79E-04
33GO:0071917: triose-phosphate transmembrane transporter activity1.32E-03
34GO:0080054: low-affinity nitrate transmembrane transporter activity1.32E-03
35GO:0043169: cation binding1.32E-03
36GO:0004373: glycogen (starch) synthase activity1.32E-03
37GO:0017150: tRNA dihydrouridine synthase activity1.32E-03
38GO:0017108: 5'-flap endonuclease activity1.32E-03
39GO:0045174: glutathione dehydrogenase (ascorbate) activity1.32E-03
40GO:0031409: pigment binding1.78E-03
41GO:0019201: nucleotide kinase activity1.91E-03
42GO:0016149: translation release factor activity, codon specific1.91E-03
43GO:0015203: polyamine transmembrane transporter activity1.91E-03
44GO:0016851: magnesium chelatase activity1.91E-03
45GO:0043023: ribosomal large subunit binding1.91E-03
46GO:0003735: structural constituent of ribosome2.04E-03
47GO:0019104: DNA N-glycosylase activity2.56E-03
48GO:0009011: starch synthase activity2.56E-03
49GO:0019199: transmembrane receptor protein kinase activity2.56E-03
50GO:0008878: glucose-1-phosphate adenylyltransferase activity2.56E-03
51GO:0042277: peptide binding2.56E-03
52GO:0015120: phosphoglycerate transmembrane transporter activity2.56E-03
53GO:0016279: protein-lysine N-methyltransferase activity2.56E-03
54GO:0030570: pectate lyase activity2.86E-03
55GO:0008810: cellulase activity2.86E-03
56GO:0008725: DNA-3-methyladenine glycosylase activity3.28E-03
57GO:0009055: electron carrier activity3.55E-03
58GO:0004332: fructose-bisphosphate aldolase activity4.05E-03
59GO:0004130: cytochrome-c peroxidase activity4.05E-03
60GO:0016615: malate dehydrogenase activity4.05E-03
61GO:0005355: glucose transmembrane transporter activity4.22E-03
62GO:0051920: peroxiredoxin activity4.88E-03
63GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.88E-03
64GO:0004017: adenylate kinase activity4.88E-03
65GO:0030060: L-malate dehydrogenase activity4.88E-03
66GO:0005261: cation channel activity4.88E-03
67GO:0004602: glutathione peroxidase activity4.88E-03
68GO:0000156: phosphorelay response regulator activity5.52E-03
69GO:0015035: protein disulfide oxidoreductase activity5.87E-03
70GO:0005337: nucleoside transmembrane transporter activity6.70E-03
71GO:0016209: antioxidant activity6.70E-03
72GO:0004033: aldo-keto reductase (NADP) activity6.70E-03
73GO:0016168: chlorophyll binding7.42E-03
74GO:0008271: secondary active sulfate transmembrane transporter activity7.69E-03
75GO:0005375: copper ion transmembrane transporter activity7.69E-03
76GO:0016829: lyase activity8.33E-03
77GO:0004252: serine-type endopeptidase activity8.61E-03
78GO:0008236: serine-type peptidase activity8.71E-03
79GO:0003747: translation release factor activity8.73E-03
80GO:0015174: basic amino acid transmembrane transporter activity9.82E-03
81GO:0004222: metalloendopeptidase activity1.01E-02
82GO:0008047: enzyme activator activity1.10E-02
83GO:0044183: protein binding involved in protein folding1.21E-02
84GO:0003691: double-stranded telomeric DNA binding1.21E-02
85GO:0015116: sulfate transmembrane transporter activity1.34E-02
86GO:0000976: transcription regulatory region sequence-specific DNA binding1.34E-02
87GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.39E-02
88GO:0004089: carbonate dehydratase activity1.46E-02
89GO:0004022: alcohol dehydrogenase (NAD) activity1.46E-02
90GO:0008266: poly(U) RNA binding1.59E-02
91GO:0051537: 2 iron, 2 sulfur cluster binding1.63E-02
92GO:0015293: symporter activity1.69E-02
93GO:0016491: oxidoreductase activity1.70E-02
94GO:0004190: aspartic-type endopeptidase activity1.73E-02
95GO:0008289: lipid binding1.95E-02
96GO:0004857: enzyme inhibitor activity2.01E-02
97GO:0005528: FK506 binding2.01E-02
98GO:0001046: core promoter sequence-specific DNA binding2.01E-02
99GO:0008408: 3'-5' exonuclease activity2.30E-02
100GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.48E-02
101GO:0022891: substrate-specific transmembrane transporter activity2.62E-02
102GO:0004812: aminoacyl-tRNA ligase activity2.94E-02
103GO:0047134: protein-disulfide reductase activity2.94E-02
104GO:0001085: RNA polymerase II transcription factor binding3.28E-02
105GO:0004791: thioredoxin-disulfide reductase activity3.45E-02
106GO:0050662: coenzyme binding3.45E-02
107GO:0004518: nuclease activity3.99E-02
108GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.17E-02
109GO:0015144: carbohydrate transmembrane transporter activity4.33E-02
110GO:0003684: damaged DNA binding4.36E-02
111GO:0008237: metallopeptidase activity4.55E-02
112GO:0005200: structural constituent of cytoskeleton4.55E-02
113GO:0015297: antiporter activity4.76E-02
114GO:0005351: sugar:proton symporter activity4.87E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0017133: mitochondrial electron transfer flavoprotein complex0.00E+00
3GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
4GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
5GO:0033557: Slx1-Slx4 complex0.00E+00
6GO:0009507: chloroplast1.68E-35
7GO:0009535: chloroplast thylakoid membrane6.85E-27
8GO:0009941: chloroplast envelope4.50E-26
9GO:0009534: chloroplast thylakoid1.02E-23
10GO:0009570: chloroplast stroma1.40E-23
11GO:0009579: thylakoid3.87E-16
12GO:0010287: plastoglobule1.66E-07
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.81E-07
14GO:0009543: chloroplast thylakoid lumen3.14E-06
15GO:0009501: amyloplast1.38E-05
16GO:0031977: thylakoid lumen3.56E-05
17GO:0010319: stromule8.58E-05
18GO:0009295: nucleoid8.58E-05
19GO:0009508: plastid chromosome9.04E-05
20GO:0009706: chloroplast inner membrane1.76E-04
21GO:0009533: chloroplast stromal thylakoid3.37E-04
22GO:0000791: euchromatin3.75E-04
23GO:0005840: ribosome3.81E-04
24GO:0009538: photosystem I reaction center4.22E-04
25GO:0009523: photosystem II5.46E-04
26GO:0048046: apoplast6.01E-04
27GO:0030093: chloroplast photosystem I8.15E-04
28GO:0030870: Mre11 complex8.15E-04
29GO:0043036: starch grain8.15E-04
30GO:0010007: magnesium chelatase complex1.32E-03
31GO:0030095: chloroplast photosystem II1.43E-03
32GO:0030076: light-harvesting complex1.60E-03
33GO:0042651: thylakoid membrane2.18E-03
34GO:0055035: plastid thylakoid membrane3.28E-03
35GO:0000795: synaptonemal complex3.28E-03
36GO:0030915: Smc5-Smc6 complex3.28E-03
37GO:0009522: photosystem I4.22E-03
38GO:0009536: plastid5.21E-03
39GO:0031969: chloroplast membrane6.55E-03
40GO:0031305: integral component of mitochondrial inner membrane6.70E-03
41GO:0000783: nuclear telomere cap complex7.69E-03
42GO:0005763: mitochondrial small ribosomal subunit8.73E-03
43GO:0042644: chloroplast nucleoid8.73E-03
44GO:0045298: tubulin complex8.73E-03
45GO:0005740: mitochondrial envelope1.10E-02
46GO:0009574: preprophase band1.46E-02
47GO:0016020: membrane1.57E-02
48GO:0009654: photosystem II oxygen evolving complex2.15E-02
49GO:0015935: small ribosomal subunit2.30E-02
50GO:0005622: intracellular2.30E-02
51GO:0005874: microtubule2.48E-02
52GO:0019898: extrinsic component of membrane3.63E-02
53GO:0005623: cell3.72E-02
54GO:0000785: chromatin3.99E-02
55GO:0030529: intracellular ribonucleoprotein complex4.94E-02
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Gene type



Gene DE type