co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G42770

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0098586: cellular response to virus	0.00E+00
5	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
6	GO:0042821: pyridoxal biosynthetic process	0.00E+00
7	GO:0015882: L-ascorbic acid transport	0.00E+00
8	GO:0042820: vitamin B6 catabolic process	0.00E+00
9	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
10	GO:1901965: endoplasmic reticulum to chloroplast transport	0.00E+00
11	GO:0051246: regulation of protein metabolic process	0.00E+00
12	GO:0048564: photosystem I assembly	2.44E-08
13	GO:0010190: cytochrome b6f complex assembly	7.11E-07
14	GO:0018298: protein-chromophore linkage	1.44E-06
15	GO:0080005: photosystem stoichiometry adjustment	2.01E-06
16	GO:0000256: allantoin catabolic process	2.01E-06
17	GO:0009657: plastid organization	4.54E-06
18	GO:0015979: photosynthesis	6.83E-06
19	GO:0090391: granum assembly	7.40E-06
20	GO:0010136: ureide catabolic process	7.40E-06
21	GO:0006145: purine nucleobase catabolic process	1.69E-05
22	GO:0009658: chloroplast organization	2.66E-05
23	GO:0009643: photosynthetic acclimation	7.36E-05
24	GO:0009644: response to high light intensity	1.01E-04
25	GO:0006436: tryptophanyl-tRNA aminoacylation	2.06E-04
26	GO:0010028: xanthophyll cycle	2.06E-04
27	GO:0010362: negative regulation of anion channel activity by blue light	2.06E-04
28	GO:0009443: pyridoxal 5'-phosphate salvage	2.06E-04
29	GO:0031426: polycistronic mRNA processing	2.06E-04
30	GO:0033388: putrescine biosynthetic process from arginine	2.06E-04
31	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.06E-04
32	GO:1904966: positive regulation of vitamin E biosynthetic process	2.06E-04
33	GO:0071277: cellular response to calcium ion	2.06E-04
34	GO:1990052: ER to chloroplast lipid transport	2.06E-04
35	GO:1904964: positive regulation of phytol biosynthetic process	2.06E-04
36	GO:0042371: vitamin K biosynthetic process	2.06E-04
37	GO:0071461: cellular response to redox state	2.06E-04
38	GO:0010027: thylakoid membrane organization	3.13E-04
39	GO:0015995: chlorophyll biosynthetic process	3.89E-04
40	GO:0080183: response to photooxidative stress	4.62E-04
41	GO:0016122: xanthophyll metabolic process	4.62E-04
42	GO:0006568: tryptophan metabolic process	4.62E-04
43	GO:0080185: effector dependent induction by symbiont of host immune response	4.62E-04
44	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.62E-04
45	GO:0046741: transport of virus in host, tissue to tissue	4.62E-04
46	GO:0009915: phloem sucrose loading	4.62E-04
47	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.62E-04
48	GO:0048314: embryo sac morphogenesis	4.62E-04
49	GO:0042548: regulation of photosynthesis, light reaction	4.62E-04
50	GO:0034755: iron ion transmembrane transport	4.62E-04
51	GO:0030187: melatonin biosynthetic process	4.62E-04
52	GO:0009446: putrescine biosynthetic process	4.62E-04
53	GO:0055114: oxidation-reduction process	5.98E-04
54	GO:0010207: photosystem II assembly	6.19E-04
55	GO:0009405: pathogenesis	7.52E-04
56	GO:0006013: mannose metabolic process	7.52E-04
57	GO:0051604: protein maturation	7.52E-04
58	GO:0009768: photosynthesis, light harvesting in photosystem I	9.35E-04
59	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.07E-03
60	GO:0071484: cellular response to light intensity	1.07E-03
61	GO:0010239: chloroplast mRNA processing	1.07E-03
62	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.07E-03
63	GO:0006809: nitric oxide biosynthetic process	1.07E-03
64	GO:0051016: barbed-end actin filament capping	1.07E-03
65	GO:0042989: sequestering of actin monomers	1.07E-03
66	GO:0046739: transport of virus in multicellular host	1.07E-03
67	GO:0050482: arachidonic acid secretion	1.07E-03
68	GO:0043572: plastid fission	1.07E-03
69	GO:2001141: regulation of RNA biosynthetic process	1.07E-03
70	GO:0009765: photosynthesis, light harvesting	1.43E-03
71	GO:0015994: chlorophyll metabolic process	1.43E-03
72	GO:0006021: inositol biosynthetic process	1.43E-03
73	GO:0009902: chloroplast relocation	1.43E-03
74	GO:0080167: response to karrikin	1.72E-03
75	GO:0016123: xanthophyll biosynthetic process	1.81E-03
76	GO:0016120: carotene biosynthetic process	1.81E-03
77	GO:0030041: actin filament polymerization	1.81E-03
78	GO:0010117: photoprotection	1.81E-03
79	GO:0009791: post-embryonic development	1.91E-03
80	GO:0010193: response to ozone	2.04E-03
81	GO:0042549: photosystem II stabilization	2.24E-03
82	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.24E-03
83	GO:0046855: inositol phosphate dephosphorylation	2.24E-03
84	GO:0071470: cellular response to osmotic stress	2.69E-03
85	GO:0010189: vitamin E biosynthetic process	2.69E-03
86	GO:0048528: post-embryonic root development	3.16E-03
87	GO:0010196: nonphotochemical quenching	3.16E-03
88	GO:0009645: response to low light intensity stimulus	3.16E-03
89	GO:0051510: regulation of unidimensional cell growth	3.16E-03
90	GO:0000105: histidine biosynthetic process	3.67E-03
91	GO:0006644: phospholipid metabolic process	3.67E-03
92	GO:0009642: response to light intensity	3.67E-03
93	GO:0009704: de-etiolation	3.67E-03
94	GO:0007623: circadian rhythm	3.72E-03
95	GO:0017004: cytochrome complex assembly	4.20E-03
96	GO:0071482: cellular response to light stimulus	4.20E-03
97	GO:0032544: plastid translation	4.20E-03
98	GO:0098656: anion transmembrane transport	4.75E-03
99	GO:0009821: alkaloid biosynthetic process	4.75E-03
100	GO:0048507: meristem development	4.75E-03
101	GO:0090333: regulation of stomatal closure	4.75E-03
102	GO:0006754: ATP biosynthetic process	4.75E-03
103	GO:0000373: Group II intron splicing	4.75E-03
104	GO:0009637: response to blue light	4.84E-03
105	GO:0009853: photorespiration	4.84E-03
106	GO:0034599: cellular response to oxidative stress	5.05E-03
107	GO:1900426: positive regulation of defense response to bacterium	5.32E-03
108	GO:0009638: phototropism	5.32E-03
109	GO:0009098: leucine biosynthetic process	5.32E-03
110	GO:0045036: protein targeting to chloroplast	5.93E-03
111	GO:0006259: DNA metabolic process	5.93E-03
112	GO:0010114: response to red light	6.23E-03
113	GO:0009735: response to cytokinin	6.50E-03
114	GO:0009773: photosynthetic electron transport in photosystem I	6.55E-03
115	GO:0006265: DNA topological change	6.55E-03
116	GO:0006415: translational termination	6.55E-03
117	GO:0006879: cellular iron ion homeostasis	6.55E-03
118	GO:0006352: DNA-templated transcription, initiation	6.55E-03
119	GO:0006790: sulfur compound metabolic process	7.20E-03
120	GO:0031347: regulation of defense response	7.55E-03
121	GO:0042538: hyperosmotic salinity response	7.82E-03
122	GO:0009767: photosynthetic electron transport chain	7.87E-03
123	GO:0005986: sucrose biosynthetic process	7.87E-03
124	GO:0006829: zinc II ion transport	7.87E-03
125	GO:0006807: nitrogen compound metabolic process	7.87E-03
126	GO:0006364: rRNA processing	8.40E-03
127	GO:0009266: response to temperature stimulus	8.56E-03
128	GO:0010020: chloroplast fission	8.56E-03
129	GO:0046854: phosphatidylinositol phosphorylation	9.27E-03
130	GO:0019853: L-ascorbic acid biosynthetic process	9.27E-03
131	GO:0090351: seedling development	9.27E-03
132	GO:0006833: water transport	1.00E-02
133	GO:0007010: cytoskeleton organization	1.08E-02
134	GO:0006457: protein folding	1.10E-02
135	GO:0051302: regulation of cell division	1.15E-02
136	GO:0008299: isoprenoid biosynthetic process	1.15E-02
137	GO:0006418: tRNA aminoacylation for protein translation	1.15E-02
138	GO:0007017: microtubule-based process	1.15E-02
139	GO:0006396: RNA processing	1.23E-02
140	GO:0006810: transport	1.23E-02
141	GO:0051321: meiotic cell cycle	1.23E-02
142	GO:0016226: iron-sulfur cluster assembly	1.32E-02
143	GO:0035428: hexose transmembrane transport	1.32E-02
144	GO:0046686: response to cadmium ion	1.36E-02
145	GO:0009306: protein secretion	1.48E-02
146	GO:0016117: carotenoid biosynthetic process	1.57E-02
147	GO:0010118: stomatal movement	1.66E-02
148	GO:0006606: protein import into nucleus	1.66E-02
149	GO:0034220: ion transmembrane transport	1.66E-02
150	GO:0000413: protein peptidyl-prolyl isomerization	1.66E-02
151	GO:0046323: glucose import	1.75E-02
152	GO:0006662: glycerol ether metabolic process	1.75E-02
153	GO:0007059: chromosome segregation	1.84E-02
154	GO:0006413: translational initiation	1.94E-02
155	GO:0000302: response to reactive oxygen species	2.03E-02
156	GO:0016032: viral process	2.13E-02
157	GO:0019761: glucosinolate biosynthetic process	2.13E-02
158	GO:0010286: heat acclimation	2.43E-02
159	GO:0010468: regulation of gene expression	2.48E-02
160	GO:0009816: defense response to bacterium, incompatible interaction	2.75E-02
161	GO:0042128: nitrate assimilation	2.86E-02
162	GO:0009817: defense response to fungus, incompatible interaction	3.19E-02
163	GO:0048481: plant ovule development	3.19E-02
164	GO:0000160: phosphorelay signal transduction system	3.31E-02
165	GO:0009409: response to cold	3.36E-02
166	GO:0010218: response to far red light	3.42E-02
167	GO:0007568: aging	3.54E-02
168	GO:0048527: lateral root development	3.54E-02
169	GO:0000724: double-strand break repair via homologous recombination	3.66E-02
170	GO:0055085: transmembrane transport	3.87E-02
171	GO:0046777: protein autophosphorylation	4.25E-02
172	GO:0006631: fatty acid metabolic process	4.27E-02
173	GO:0045454: cell redox homeostasis	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
4	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
5	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
6	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
7	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
8	GO:0022883: zinc efflux transmembrane transporter activity	0.00E+00
9	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
10	GO:0009976: tocopherol cyclase activity	0.00E+00
11	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
12	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
13	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
14	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
15	GO:0050126: N-carbamoylputrescine amidase activity	0.00E+00
16	GO:0070402: NADPH binding	7.40E-06
17	GO:0016168: chlorophyll binding	2.26E-05
18	GO:0016853: isomerase activity	1.55E-04
19	GO:0030941: chloroplast targeting sequence binding	2.06E-04
20	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.06E-04
21	GO:0035671: enone reductase activity	2.06E-04
22	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.06E-04
23	GO:0004830: tryptophan-tRNA ligase activity	2.06E-04
24	GO:0003879: ATP phosphoribosyltransferase activity	2.06E-04
25	GO:0052832: inositol monophosphate 3-phosphatase activity	4.62E-04
26	GO:0008934: inositol monophosphate 1-phosphatase activity	4.62E-04
27	GO:0052833: inositol monophosphate 4-phosphatase activity	4.62E-04
28	GO:0003862: 3-isopropylmalate dehydrogenase activity	4.62E-04
29	GO:0010277: chlorophyllide a oxygenase [overall] activity	7.52E-04
30	GO:0032947: protein complex scaffold	7.52E-04
31	GO:0004848: ureidoglycolate hydrolase activity	7.52E-04
32	GO:0004148: dihydrolipoyl dehydrogenase activity	7.52E-04
33	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.52E-04
34	GO:0050307: sucrose-phosphate phosphatase activity	7.52E-04
35	GO:0004751: ribose-5-phosphate isomerase activity	7.52E-04
36	GO:0031409: pigment binding	7.70E-04
37	GO:0051537: 2 iron, 2 sulfur cluster binding	9.09E-04
38	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.07E-03
39	GO:0048027: mRNA 5'-UTR binding	1.07E-03
40	GO:0016149: translation release factor activity, codon specific	1.07E-03
41	GO:0016851: magnesium chelatase activity	1.07E-03
42	GO:0009882: blue light photoreceptor activity	1.07E-03
43	GO:0022891: substrate-specific transmembrane transporter activity	1.21E-03
44	GO:0001053: plastid sigma factor activity	1.43E-03
45	GO:0005319: lipid transporter activity	1.43E-03
46	GO:0051861: glycolipid binding	1.43E-03
47	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.43E-03
48	GO:0008453: alanine-glyoxylate transaminase activity	1.43E-03
49	GO:0016987: sigma factor activity	1.43E-03
50	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.43E-03
51	GO:0043495: protein anchor	1.43E-03
52	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.43E-03
53	GO:0008080: N-acetyltransferase activity	1.66E-03
54	GO:0004623: phospholipase A2 activity	1.81E-03
55	GO:0003785: actin monomer binding	1.81E-03
56	GO:0048038: quinone binding	2.04E-03
57	GO:0004559: alpha-mannosidase activity	2.69E-03
58	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.69E-03
59	GO:0019899: enzyme binding	3.16E-03
60	GO:0009055: electron carrier activity	3.46E-03
61	GO:0004033: aldo-keto reductase (NADP) activity	3.67E-03
62	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	4.20E-03
63	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	4.75E-03
64	GO:0003747: translation release factor activity	4.75E-03
65	GO:0016844: strictosidine synthase activity	5.32E-03
66	GO:0005381: iron ion transmembrane transporter activity	5.32E-03
67	GO:0045309: protein phosphorylated amino acid binding	5.32E-03
68	GO:0000287: magnesium ion binding	6.33E-03
69	GO:0019904: protein domain specific binding	6.55E-03
70	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.27E-03
71	GO:0031072: heat shock protein binding	7.87E-03
72	GO:0000155: phosphorelay sensor kinase activity	7.87E-03
73	GO:0005315: inorganic phosphate transmembrane transporter activity	7.87E-03
74	GO:0051536: iron-sulfur cluster binding	1.08E-02
75	GO:0005528: FK506 binding	1.08E-02
76	GO:0043424: protein histidine kinase binding	1.15E-02
77	GO:0003779: actin binding	1.16E-02
78	GO:0004176: ATP-dependent peptidase activity	1.23E-02
79	GO:0003727: single-stranded RNA binding	1.48E-02
80	GO:0008514: organic anion transmembrane transporter activity	1.48E-02
81	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.54E-02
82	GO:0047134: protein-disulfide reductase activity	1.57E-02
83	GO:0004812: aminoacyl-tRNA ligase activity	1.57E-02
84	GO:0008565: protein transporter activity	1.80E-02
85	GO:0004791: thioredoxin-disulfide reductase activity	1.84E-02
86	GO:0005355: glucose transmembrane transporter activity	1.84E-02
87	GO:0010181: FMN binding	1.84E-02
88	GO:0005506: iron ion binding	2.10E-02
89	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.23E-02
90	GO:0016887: ATPase activity	2.43E-02
91	GO:0003743: translation initiation factor activity	2.43E-02
92	GO:0008237: metallopeptidase activity	2.43E-02
93	GO:0042802: identical protein binding	2.64E-02
94	GO:0015250: water channel activity	2.64E-02
95	GO:0008236: serine-type peptidase activity	3.08E-02
96	GO:0030145: manganese ion binding	3.54E-02
97	GO:0050897: cobalt ion binding	3.54E-02
98	GO:0008233: peptidase activity	3.91E-02
99	GO:0043621: protein self-association	4.78E-02
100	GO:0005198: structural molecule activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.91E-48
2	GO:0009535: chloroplast thylakoid membrane	1.92E-36
3	GO:0009941: chloroplast envelope	1.63E-14
4	GO:0009534: chloroplast thylakoid	2.03E-14
5	GO:0009570: chloroplast stroma	4.05E-12
6	GO:0009579: thylakoid	9.80E-11
7	GO:0009543: chloroplast thylakoid lumen	1.52E-07
8	GO:0031977: thylakoid lumen	1.55E-07
9	GO:0009523: photosystem II	8.00E-06
10	GO:0009706: chloroplast inner membrane	2.63E-05
11	GO:0009654: photosystem II oxygen evolving complex	5.71E-05
12	GO:0042651: thylakoid membrane	5.71E-05
13	GO:0009782: photosystem I antenna complex	2.06E-04
14	GO:0009515: granal stacked thylakoid	2.06E-04
15	GO:0010287: plastoglobule	3.60E-04
16	GO:0008290: F-actin capping protein complex	4.62E-04
17	GO:0045254: pyruvate dehydrogenase complex	4.62E-04
18	GO:0030095: chloroplast photosystem II	6.19E-04
19	GO:0010007: magnesium chelatase complex	7.52E-04
20	GO:0033281: TAT protein transport complex	7.52E-04
21	GO:0030286: dynein complex	1.43E-03
22	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.43E-03
23	GO:0009526: plastid envelope	1.43E-03
24	GO:0031969: chloroplast membrane	1.72E-03
25	GO:0055035: plastid thylakoid membrane	1.81E-03
26	GO:0019898: extrinsic component of membrane	1.91E-03
27	GO:0009295: nucleoid	2.62E-03
28	GO:0009533: chloroplast stromal thylakoid	3.16E-03
29	GO:0031359: integral component of chloroplast outer membrane	3.16E-03
30	GO:0009707: chloroplast outer membrane	3.82E-03
31	GO:0009539: photosystem II reaction center	4.20E-03
32	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.75E-03
33	GO:0042644: chloroplast nucleoid	4.75E-03
34	GO:0009508: plastid chromosome	7.87E-03
35	GO:0005938: cell cortex	7.87E-03
36	GO:0030076: light-harvesting complex	9.27E-03
37	GO:0005875: microtubule associated complex	1.00E-02
38	GO:0005747: mitochondrial respiratory chain complex I	1.03E-02
39	GO:0045271: respiratory chain complex I	1.15E-02
40	GO:0015629: actin cytoskeleton	1.40E-02
41	GO:0009522: photosystem I	1.84E-02
42	GO:0005759: mitochondrial matrix	1.89E-02
43	GO:0010319: stromule	2.43E-02
44	GO:0009536: plastid	2.91E-02
45	GO:0016021: integral component of membrane	3.87E-02