GO Enrichment Analysis of Co-expressed Genes with
AT2G42750
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 2 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 3 | GO:0098586: cellular response to virus | 0.00E+00 |
| 4 | GO:0017009: protein-phycocyanobilin linkage | 0.00E+00 |
| 5 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 6 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 7 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 8 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 9 | GO:0000256: allantoin catabolic process | 1.35E-06 |
| 10 | GO:0015979: photosynthesis | 2.51E-06 |
| 11 | GO:0009644: response to high light intensity | 2.97E-06 |
| 12 | GO:0010136: ureide catabolic process | 5.01E-06 |
| 13 | GO:0006145: purine nucleobase catabolic process | 1.16E-05 |
| 14 | GO:0018298: protein-chromophore linkage | 1.90E-05 |
| 15 | GO:0009765: photosynthesis, light harvesting | 2.16E-05 |
| 16 | GO:0010189: vitamin E biosynthetic process | 7.27E-05 |
| 17 | GO:0009645: response to low light intensity stimulus | 9.72E-05 |
| 18 | GO:0009657: plastid organization | 1.56E-04 |
| 19 | GO:0033388: putrescine biosynthetic process from arginine | 1.67E-04 |
| 20 | GO:0071277: cellular response to calcium ion | 1.67E-04 |
| 21 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.67E-04 |
| 22 | GO:0031426: polycistronic mRNA processing | 1.67E-04 |
| 23 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.67E-04 |
| 24 | GO:1904964: positive regulation of phytol biosynthetic process | 1.67E-04 |
| 25 | GO:0042371: vitamin K biosynthetic process | 1.67E-04 |
| 26 | GO:0015995: chlorophyll biosynthetic process | 2.61E-04 |
| 27 | GO:0016122: xanthophyll metabolic process | 3.78E-04 |
| 28 | GO:0046741: transport of virus in host, tissue to tissue | 3.78E-04 |
| 29 | GO:0009915: phloem sucrose loading | 3.78E-04 |
| 30 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.78E-04 |
| 31 | GO:0042548: regulation of photosynthesis, light reaction | 3.78E-04 |
| 32 | GO:0080005: photosystem stoichiometry adjustment | 3.78E-04 |
| 33 | GO:0010042: response to manganese ion | 3.78E-04 |
| 34 | GO:0030187: melatonin biosynthetic process | 3.78E-04 |
| 35 | GO:0009446: putrescine biosynthetic process | 3.78E-04 |
| 36 | GO:0009405: pathogenesis | 6.19E-04 |
| 37 | GO:0005977: glycogen metabolic process | 6.19E-04 |
| 38 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.02E-04 |
| 39 | GO:0071484: cellular response to light intensity | 8.83E-04 |
| 40 | GO:0010239: chloroplast mRNA processing | 8.83E-04 |
| 41 | GO:0051016: barbed-end actin filament capping | 8.83E-04 |
| 42 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 8.83E-04 |
| 43 | GO:0046739: transport of virus in multicellular host | 8.83E-04 |
| 44 | GO:0043572: plastid fission | 8.83E-04 |
| 45 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 8.83E-04 |
| 46 | GO:0055114: oxidation-reduction process | 9.21E-04 |
| 47 | GO:0015994: chlorophyll metabolic process | 1.17E-03 |
| 48 | GO:0006021: inositol biosynthetic process | 1.17E-03 |
| 49 | GO:0010021: amylopectin biosynthetic process | 1.17E-03 |
| 50 | GO:0016123: xanthophyll biosynthetic process | 1.48E-03 |
| 51 | GO:0016120: carotene biosynthetic process | 1.48E-03 |
| 52 | GO:0016558: protein import into peroxisome matrix | 1.48E-03 |
| 53 | GO:0010117: photoprotection | 1.48E-03 |
| 54 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.83E-03 |
| 55 | GO:0000741: karyogamy | 1.83E-03 |
| 56 | GO:0046855: inositol phosphate dephosphorylation | 1.83E-03 |
| 57 | GO:0009117: nucleotide metabolic process | 1.83E-03 |
| 58 | GO:0009643: photosynthetic acclimation | 1.83E-03 |
| 59 | GO:0071470: cellular response to osmotic stress | 2.19E-03 |
| 60 | GO:0048528: post-embryonic root development | 2.58E-03 |
| 61 | GO:1900056: negative regulation of leaf senescence | 2.58E-03 |
| 62 | GO:0009769: photosynthesis, light harvesting in photosystem II | 2.58E-03 |
| 63 | GO:0030026: cellular manganese ion homeostasis | 2.58E-03 |
| 64 | GO:0048564: photosystem I assembly | 2.99E-03 |
| 65 | GO:0009642: response to light intensity | 2.99E-03 |
| 66 | GO:0030091: protein repair | 2.99E-03 |
| 67 | GO:0009704: de-etiolation | 2.99E-03 |
| 68 | GO:0009853: photorespiration | 3.58E-03 |
| 69 | GO:0048507: meristem development | 3.86E-03 |
| 70 | GO:0009821: alkaloid biosynthetic process | 3.86E-03 |
| 71 | GO:0090333: regulation of stomatal closure | 3.86E-03 |
| 72 | GO:0006754: ATP biosynthetic process | 3.86E-03 |
| 73 | GO:0009638: phototropism | 4.33E-03 |
| 74 | GO:0010380: regulation of chlorophyll biosynthetic process | 4.33E-03 |
| 75 | GO:0010114: response to red light | 4.61E-03 |
| 76 | GO:0009773: photosynthetic electron transport in photosystem I | 5.32E-03 |
| 77 | GO:0006415: translational termination | 5.32E-03 |
| 78 | GO:0006790: sulfur compound metabolic process | 5.84E-03 |
| 79 | GO:0005986: sucrose biosynthetic process | 6.38E-03 |
| 80 | GO:0006807: nitrogen compound metabolic process | 6.38E-03 |
| 81 | GO:0055085: transmembrane transport | 6.74E-03 |
| 82 | GO:0009266: response to temperature stimulus | 6.93E-03 |
| 83 | GO:0010020: chloroplast fission | 6.93E-03 |
| 84 | GO:0010207: photosystem II assembly | 6.93E-03 |
| 85 | GO:0046688: response to copper ion | 7.50E-03 |
| 86 | GO:0019853: L-ascorbic acid biosynthetic process | 7.50E-03 |
| 87 | GO:0046854: phosphatidylinositol phosphorylation | 7.50E-03 |
| 88 | GO:0046686: response to cadmium ion | 8.02E-03 |
| 89 | GO:0006833: water transport | 8.10E-03 |
| 90 | GO:0080147: root hair cell development | 8.70E-03 |
| 91 | GO:0006396: RNA processing | 9.10E-03 |
| 92 | GO:0051302: regulation of cell division | 9.33E-03 |
| 93 | GO:0008299: isoprenoid biosynthetic process | 9.33E-03 |
| 94 | GO:0007017: microtubule-based process | 9.33E-03 |
| 95 | GO:0009269: response to desiccation | 9.97E-03 |
| 96 | GO:0019748: secondary metabolic process | 1.06E-02 |
| 97 | GO:0016117: carotenoid biosynthetic process | 1.27E-02 |
| 98 | GO:0006606: protein import into nucleus | 1.34E-02 |
| 99 | GO:0034220: ion transmembrane transport | 1.34E-02 |
| 100 | GO:0010197: polar nucleus fusion | 1.41E-02 |
| 101 | GO:0048868: pollen tube development | 1.41E-02 |
| 102 | GO:0006413: translational initiation | 1.43E-02 |
| 103 | GO:0007623: circadian rhythm | 1.53E-02 |
| 104 | GO:0009791: post-embryonic development | 1.56E-02 |
| 105 | GO:0019252: starch biosynthetic process | 1.56E-02 |
| 106 | GO:0008654: phospholipid biosynthetic process | 1.56E-02 |
| 107 | GO:0010193: response to ozone | 1.64E-02 |
| 108 | GO:0000302: response to reactive oxygen species | 1.64E-02 |
| 109 | GO:0006635: fatty acid beta-oxidation | 1.64E-02 |
| 110 | GO:0016032: viral process | 1.72E-02 |
| 111 | GO:0010468: regulation of gene expression | 1.83E-02 |
| 112 | GO:0009416: response to light stimulus | 1.97E-02 |
| 113 | GO:0009409: response to cold | 2.15E-02 |
| 114 | GO:0009658: chloroplast organization | 2.38E-02 |
| 115 | GO:0006810: transport | 2.42E-02 |
| 116 | GO:0009817: defense response to fungus, incompatible interaction | 2.57E-02 |
| 117 | GO:0006811: ion transport | 2.76E-02 |
| 118 | GO:0010218: response to far red light | 2.76E-02 |
| 119 | GO:0007568: aging | 2.85E-02 |
| 120 | GO:0009910: negative regulation of flower development | 2.85E-02 |
| 121 | GO:0080167: response to karrikin | 2.95E-02 |
| 122 | GO:0006865: amino acid transport | 2.95E-02 |
| 123 | GO:0009637: response to blue light | 3.05E-02 |
| 124 | GO:0034599: cellular response to oxidative stress | 3.14E-02 |
| 125 | GO:0006631: fatty acid metabolic process | 3.44E-02 |
| 126 | GO:0031347: regulation of defense response | 4.18E-02 |
| 127 | GO:0006812: cation transport | 4.29E-02 |
| 128 | GO:0006364: rRNA processing | 4.51E-02 |
| 129 | GO:0009585: red, far-red light phototransduction | 4.51E-02 |
| 130 | GO:0010224: response to UV-B | 4.62E-02 |
| 131 | GO:0006979: response to oxidative stress | 4.77E-02 |
| 132 | GO:0006417: regulation of translation | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 2 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 3 | GO:0004059: aralkylamine N-acetyltransferase activity | 0.00E+00 |
| 4 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 5 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 6 | GO:0009976: tocopherol cyclase activity | 0.00E+00 |
| 7 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 8 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 9 | GO:0042623: ATPase activity, coupled | 0.00E+00 |
| 10 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 11 | GO:0010276: phytol kinase activity | 0.00E+00 |
| 12 | GO:0010486: manganese:proton antiporter activity | 0.00E+00 |
| 13 | GO:0050126: N-carbamoylputrescine amidase activity | 0.00E+00 |
| 14 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 15 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 16 | GO:0070402: NADPH binding | 5.01E-06 |
| 17 | GO:0016168: chlorophyll binding | 1.22E-05 |
| 18 | GO:0004462: lactoylglutathione lyase activity | 5.21E-05 |
| 19 | GO:0016853: isomerase activity | 1.00E-04 |
| 20 | GO:0035671: enone reductase activity | 1.67E-04 |
| 21 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.67E-04 |
| 22 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.78E-04 |
| 23 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.78E-04 |
| 24 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.78E-04 |
| 25 | GO:0019172: glyoxalase III activity | 3.78E-04 |
| 26 | GO:0019156: isoamylase activity | 3.78E-04 |
| 27 | GO:0031409: pigment binding | 5.76E-04 |
| 28 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 6.19E-04 |
| 29 | GO:0004848: ureidoglycolate hydrolase activity | 6.19E-04 |
| 30 | GO:0004148: dihydrolipoyl dehydrogenase activity | 6.19E-04 |
| 31 | GO:0050307: sucrose-phosphate phosphatase activity | 6.19E-04 |
| 32 | GO:0004751: ribose-5-phosphate isomerase activity | 6.19E-04 |
| 33 | GO:0048027: mRNA 5'-UTR binding | 8.83E-04 |
| 34 | GO:0016851: magnesium chelatase activity | 8.83E-04 |
| 35 | GO:0035529: NADH pyrophosphatase activity | 8.83E-04 |
| 36 | GO:0016149: translation release factor activity, codon specific | 8.83E-04 |
| 37 | GO:0022891: substrate-specific transmembrane transporter activity | 9.13E-04 |
| 38 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.17E-03 |
| 39 | GO:0008453: alanine-glyoxylate transaminase activity | 1.17E-03 |
| 40 | GO:0043495: protein anchor | 1.17E-03 |
| 41 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 1.17E-03 |
| 42 | GO:0008080: N-acetyltransferase activity | 1.24E-03 |
| 43 | GO:0005275: amine transmembrane transporter activity | 1.48E-03 |
| 44 | GO:0004605: phosphatidate cytidylyltransferase activity | 1.83E-03 |
| 45 | GO:0000293: ferric-chelate reductase activity | 1.83E-03 |
| 46 | GO:0004556: alpha-amylase activity | 1.83E-03 |
| 47 | GO:0016462: pyrophosphatase activity | 1.83E-03 |
| 48 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 2.19E-03 |
| 49 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.19E-03 |
| 50 | GO:0019899: enzyme binding | 2.58E-03 |
| 51 | GO:0004033: aldo-keto reductase (NADP) activity | 2.99E-03 |
| 52 | GO:0016887: ATPase activity | 3.82E-03 |
| 53 | GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism | 3.86E-03 |
| 54 | GO:0003747: translation release factor activity | 3.86E-03 |
| 55 | GO:0005384: manganese ion transmembrane transporter activity | 4.33E-03 |
| 56 | GO:0045309: protein phosphorylated amino acid binding | 4.33E-03 |
| 57 | GO:0016844: strictosidine synthase activity | 4.33E-03 |
| 58 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 5.32E-03 |
| 59 | GO:0019904: protein domain specific binding | 5.32E-03 |
| 60 | GO:0016491: oxidoreductase activity | 5.98E-03 |
| 61 | GO:0008081: phosphoric diester hydrolase activity | 6.38E-03 |
| 62 | GO:0031625: ubiquitin protein ligase binding | 6.87E-03 |
| 63 | GO:0005528: FK506 binding | 8.70E-03 |
| 64 | GO:0008324: cation transmembrane transporter activity | 9.33E-03 |
| 65 | GO:0004176: ATP-dependent peptidase activity | 9.97E-03 |
| 66 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.14E-02 |
| 67 | GO:0016829: lyase activity | 1.20E-02 |
| 68 | GO:0003727: single-stranded RNA binding | 1.20E-02 |
| 69 | GO:0048038: quinone binding | 1.64E-02 |
| 70 | GO:0008483: transaminase activity | 1.96E-02 |
| 71 | GO:0008237: metallopeptidase activity | 1.96E-02 |
| 72 | GO:0015250: water channel activity | 2.13E-02 |
| 73 | GO:0030145: manganese ion binding | 2.85E-02 |
| 74 | GO:0050897: cobalt ion binding | 2.85E-02 |
| 75 | GO:0008233: peptidase activity | 2.90E-02 |
| 76 | GO:0061630: ubiquitin protein ligase activity | 3.10E-02 |
| 77 | GO:0046872: metal ion binding | 3.39E-02 |
| 78 | GO:0004364: glutathione transferase activity | 3.55E-02 |
| 79 | GO:0004185: serine-type carboxypeptidase activity | 3.65E-02 |
| 80 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.86E-02 |
| 81 | GO:0043621: protein self-association | 3.86E-02 |
| 82 | GO:0005198: structural molecule activity | 3.96E-02 |
| 83 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.07E-02 |
| 84 | GO:0009055: electron carrier activity | 4.65E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 4.90E-27 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 1.30E-20 |
| 4 | GO:0009941: chloroplast envelope | 5.69E-08 |
| 5 | GO:0009534: chloroplast thylakoid | 5.79E-08 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 2.20E-05 |
| 7 | GO:0042651: thylakoid membrane | 3.58E-05 |
| 8 | GO:0009579: thylakoid | 5.82E-05 |
| 9 | GO:0009570: chloroplast stroma | 6.43E-05 |
| 10 | GO:0009523: photosystem II | 1.12E-04 |
| 11 | GO:0009782: photosystem I antenna complex | 1.67E-04 |
| 12 | GO:0010287: plastoglobule | 2.20E-04 |
| 13 | GO:0008290: F-actin capping protein complex | 3.78E-04 |
| 14 | GO:0030076: light-harvesting complex | 5.19E-04 |
| 15 | GO:0010007: magnesium chelatase complex | 6.19E-04 |
| 16 | GO:0030286: dynein complex | 1.17E-03 |
| 17 | GO:0009517: PSII associated light-harvesting complex II | 1.17E-03 |
| 18 | GO:0009706: chloroplast inner membrane | 1.27E-03 |
| 19 | GO:0005778: peroxisomal membrane | 1.95E-03 |
| 20 | GO:0042644: chloroplast nucleoid | 3.86E-03 |
| 21 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.86E-03 |
| 22 | GO:0031977: thylakoid lumen | 4.26E-03 |
| 23 | GO:0031969: chloroplast membrane | 5.80E-03 |
| 24 | GO:0009508: plastid chromosome | 6.38E-03 |
| 25 | GO:0030095: chloroplast photosystem II | 6.93E-03 |
| 26 | GO:0005747: mitochondrial respiratory chain complex I | 7.58E-03 |
| 27 | GO:0009654: photosystem II oxygen evolving complex | 9.33E-03 |
| 28 | GO:0045271: respiratory chain complex I | 9.33E-03 |
| 29 | GO:0005770: late endosome | 1.41E-02 |
| 30 | GO:0009522: photosystem I | 1.49E-02 |
| 31 | GO:0019898: extrinsic component of membrane | 1.56E-02 |
| 32 | GO:0010319: stromule | 1.96E-02 |
| 33 | GO:0009295: nucleoid | 1.96E-02 |
| 34 | GO:0009707: chloroplast outer membrane | 2.57E-02 |
| 35 | GO:0031902: late endosome membrane | 3.44E-02 |
| 36 | GO:0031966: mitochondrial membrane | 4.29E-02 |