Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G42730

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0009715: chalcone biosynthetic process0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0042820: vitamin B6 catabolic process0.00E+00
5GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
6GO:0015882: L-ascorbic acid transport0.00E+00
7GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
8GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
9GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
10GO:0070125: mitochondrial translational elongation0.00E+00
11GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
12GO:0015979: photosynthesis1.68E-22
13GO:0018298: protein-chromophore linkage6.54E-17
14GO:0009768: photosynthesis, light harvesting in photosystem I3.17E-12
15GO:0090391: granum assembly1.15E-08
16GO:0009645: response to low light intensity stimulus1.40E-08
17GO:0009644: response to high light intensity2.72E-07
18GO:0010207: photosystem II assembly5.78E-07
19GO:0019253: reductive pentose-phosphate cycle5.78E-07
20GO:0010218: response to far red light1.94E-06
21GO:1902326: positive regulation of chlorophyll biosynthetic process2.06E-06
22GO:0010196: nonphotochemical quenching2.09E-06
23GO:0009769: photosynthesis, light harvesting in photosystem II2.09E-06
24GO:0010114: response to red light5.45E-06
25GO:0010206: photosystem II repair6.54E-06
26GO:0009773: photosynthetic electron transport in photosystem I1.52E-05
27GO:0006096: glycolytic process1.75E-05
28GO:0010027: thylakoid membrane organization2.08E-05
29GO:0006006: glucose metabolic process2.39E-05
30GO:0006094: gluconeogenesis2.39E-05
31GO:0009765: photosynthesis, light harvesting3.17E-05
32GO:0006021: inositol biosynthetic process3.17E-05
33GO:0010236: plastoquinone biosynthetic process5.09E-05
34GO:0009637: response to blue light5.64E-05
35GO:0009269: response to desiccation6.78E-05
36GO:0042549: photosystem II stabilization7.50E-05
37GO:0009772: photosynthetic electron transport in photosystem II1.37E-04
38GO:0048564: photosystem I assembly1.76E-04
39GO:0009642: response to light intensity1.76E-04
40GO:0006419: alanyl-tRNA aminoacylation2.09E-04
41GO:0009443: pyridoxal 5'-phosphate salvage2.09E-04
42GO:0043953: protein transport by the Tat complex2.09E-04
43GO:0051775: response to redox state2.09E-04
44GO:0071277: cellular response to calcium ion2.09E-04
45GO:0000481: maturation of 5S rRNA2.09E-04
46GO:0042371: vitamin K biosynthetic process2.09E-04
47GO:0065002: intracellular protein transmembrane transport2.09E-04
48GO:0043686: co-translational protein modification2.09E-04
49GO:0010028: xanthophyll cycle2.09E-04
50GO:0034337: RNA folding2.09E-04
51GO:0006098: pentose-phosphate shunt2.65E-04
52GO:0090333: regulation of stomatal closure2.65E-04
53GO:0010205: photoinhibition3.16E-04
54GO:0015995: chlorophyll biosynthetic process3.97E-04
55GO:0009416: response to light stimulus4.48E-04
56GO:0035304: regulation of protein dephosphorylation4.66E-04
57GO:0009629: response to gravity4.66E-04
58GO:0030187: melatonin biosynthetic process4.66E-04
59GO:0000256: allantoin catabolic process4.66E-04
60GO:0006729: tetrahydrobiopterin biosynthetic process4.66E-04
61GO:0030388: fructose 1,6-bisphosphate metabolic process4.66E-04
62GO:0006000: fructose metabolic process7.59E-04
63GO:0009405: pathogenesis7.59E-04
64GO:0010136: ureide catabolic process7.59E-04
65GO:0005977: glycogen metabolic process7.59E-04
66GO:0009409: response to cold9.71E-04
67GO:0009793: embryo development ending in seed dormancy1.00E-03
68GO:0071484: cellular response to light intensity1.08E-03
69GO:0006107: oxaloacetate metabolic process1.08E-03
70GO:0006145: purine nucleobase catabolic process1.08E-03
71GO:0042989: sequestering of actin monomers1.08E-03
72GO:0046739: transport of virus in multicellular host1.08E-03
73GO:0042823: pyridoxal phosphate biosynthetic process1.08E-03
74GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.08E-03
75GO:0009067: aspartate family amino acid biosynthetic process1.08E-03
76GO:0006020: inositol metabolic process1.08E-03
77GO:0055114: oxidation-reduction process1.39E-03
78GO:0019464: glycine decarboxylation via glycine cleavage system1.44E-03
79GO:0006109: regulation of carbohydrate metabolic process1.44E-03
80GO:0015994: chlorophyll metabolic process1.44E-03
81GO:0030104: water homeostasis1.44E-03
82GO:0006546: glycine catabolic process1.44E-03
83GO:0006734: NADH metabolic process1.44E-03
84GO:0009902: chloroplast relocation1.44E-03
85GO:0010021: amylopectin biosynthetic process1.44E-03
86GO:0015976: carbon utilization1.44E-03
87GO:0016558: protein import into peroxisome matrix1.83E-03
88GO:0030041: actin filament polymerization1.83E-03
89GO:0006564: L-serine biosynthetic process1.83E-03
90GO:0031365: N-terminal protein amino acid modification1.83E-03
91GO:0019252: starch biosynthetic process1.94E-03
92GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.26E-03
93GO:0046855: inositol phosphate dephosphorylation2.26E-03
94GO:0050665: hydrogen peroxide biosynthetic process2.26E-03
95GO:0071470: cellular response to osmotic stress2.71E-03
96GO:0042372: phylloquinone biosynthetic process2.71E-03
97GO:0010189: vitamin E biosynthetic process2.71E-03
98GO:0009854: oxidative photosynthetic carbon pathway2.71E-03
99GO:0009088: threonine biosynthetic process2.71E-03
100GO:0006400: tRNA modification3.20E-03
101GO:0051510: regulation of unidimensional cell growth3.20E-03
102GO:0016311: dephosphorylation3.69E-03
103GO:0009704: de-etiolation3.71E-03
104GO:0032508: DNA duplex unwinding3.71E-03
105GO:0031540: regulation of anthocyanin biosynthetic process3.71E-03
106GO:0016559: peroxisome fission3.71E-03
107GO:0006002: fructose 6-phosphate metabolic process4.24E-03
108GO:0071482: cellular response to light stimulus4.24E-03
109GO:0017004: cytochrome complex assembly4.24E-03
110GO:0098656: anion transmembrane transport4.80E-03
111GO:0009821: alkaloid biosynthetic process4.80E-03
112GO:0006754: ATP biosynthetic process4.80E-03
113GO:0034599: cellular response to oxidative stress5.13E-03
114GO:0009638: phototropism5.38E-03
115GO:0006949: syncytium formation5.99E-03
116GO:0009744: response to sucrose6.33E-03
117GO:0042742: defense response to bacterium6.48E-03
118GO:0009658: chloroplast organization6.61E-03
119GO:0019684: photosynthesis, light reaction6.62E-03
120GO:0009089: lysine biosynthetic process via diaminopimelate6.62E-03
121GO:0043085: positive regulation of catalytic activity6.62E-03
122GO:0018119: peptidyl-cysteine S-nitrosylation6.62E-03
123GO:0006790: sulfur compound metabolic process7.28E-03
124GO:0005986: sucrose biosynthetic process7.96E-03
125GO:0006108: malate metabolic process7.96E-03
126GO:0009767: photosynthetic electron transport chain7.96E-03
127GO:0009585: red, far-red light phototransduction8.54E-03
128GO:0006302: double-strand break repair8.66E-03
129GO:0010020: chloroplast fission8.66E-03
130GO:0010224: response to UV-B8.83E-03
131GO:0090351: seedling development9.37E-03
132GO:0046854: phosphatidylinositol phosphorylation9.37E-03
133GO:0006833: water transport1.01E-02
134GO:0080147: root hair cell development1.09E-02
135GO:0007010: cytoskeleton organization1.09E-02
136GO:0055085: transmembrane transport1.09E-02
137GO:0007017: microtubule-based process1.17E-02
138GO:0051321: meiotic cell cycle1.25E-02
139GO:0006810: transport1.26E-02
140GO:0006730: one-carbon metabolic process1.33E-02
141GO:0046686: response to cadmium ion1.40E-02
142GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.41E-02
143GO:0071215: cellular response to abscisic acid stimulus1.41E-02
144GO:0009561: megagametogenesis1.50E-02
145GO:0009845: seed germination1.65E-02
146GO:0034220: ion transmembrane transport1.68E-02
147GO:0006606: protein import into nucleus1.68E-02
148GO:0006662: glycerol ether metabolic process1.77E-02
149GO:0048868: pollen tube development1.77E-02
150GO:0015986: ATP synthesis coupled proton transport1.86E-02
151GO:0009791: post-embryonic development1.96E-02
152GO:0008654: phospholipid biosynthetic process1.96E-02
153GO:0006413: translational initiation1.97E-02
154GO:0071554: cell wall organization or biogenesis2.06E-02
155GO:0010193: response to ozone2.06E-02
156GO:0006635: fatty acid beta-oxidation2.06E-02
157GO:0007623: circadian rhythm2.11E-02
158GO:0016032: viral process2.15E-02
159GO:0009451: RNA modification2.16E-02
160GO:0009567: double fertilization forming a zygote and endosperm2.36E-02
161GO:0009828: plant-type cell wall loosening2.36E-02
162GO:0051607: defense response to virus2.57E-02
163GO:0009735: response to cytokinin2.63E-02
164GO:0009817: defense response to fungus, incompatible interaction3.23E-02
165GO:0042254: ribosome biogenesis3.33E-02
166GO:0009813: flavonoid biosynthetic process3.34E-02
167GO:0006811: ion transport3.46E-02
168GO:0048527: lateral root development3.58E-02
169GO:0007568: aging3.58E-02
170GO:0009853: photorespiration3.82E-02
171GO:0016051: carbohydrate biosynthetic process3.82E-02
172GO:0006099: tricarboxylic acid cycle3.94E-02
173GO:0080167: response to karrikin4.04E-02
174GO:0005975: carbohydrate metabolic process4.05E-02
175GO:0042542: response to hydrogen peroxide4.45E-02
176GO:0009926: auxin polar transport4.57E-02
177GO:0045454: cell redox homeostasis4.83E-02
RankGO TermAdjusted P value
1GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
2GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
3GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0016210: naringenin-chalcone synthase activity0.00E+00
6GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
7GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
8GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
9GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
10GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
11GO:0004760: serine-pyruvate transaminase activity0.00E+00
12GO:0015229: L-ascorbic acid transporter activity0.00E+00
13GO:0042623: ATPase activity, coupled0.00E+00
14GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity0.00E+00
15GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
16GO:0050281: serine-glyoxylate transaminase activity0.00E+00
17GO:0016168: chlorophyll binding1.54E-15
18GO:0031409: pigment binding1.33E-12
19GO:0043495: protein anchor3.17E-05
20GO:0003959: NADPH dehydrogenase activity5.09E-05
21GO:0004332: fructose-bisphosphate aldolase activity7.50E-05
22GO:0022891: substrate-specific transmembrane transporter activity8.92E-05
23GO:0019899: enzyme binding1.37E-04
24GO:0004451: isocitrate lyase activity2.09E-04
25GO:0004813: alanine-tRNA ligase activity2.09E-04
26GO:0010242: oxygen evolving activity2.09E-04
27GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity2.09E-04
28GO:0042586: peptide deformylase activity2.09E-04
29GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.09E-04
30GO:0008746: NAD(P)+ transhydrogenase activity2.09E-04
31GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.09E-04
32GO:0016784: 3-mercaptopyruvate sulfurtransferase activity2.09E-04
33GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.09E-04
34GO:0016597: amino acid binding2.96E-04
35GO:0052832: inositol monophosphate 3-phosphatase activity4.66E-04
36GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.66E-04
37GO:0016630: protochlorophyllide reductase activity4.66E-04
38GO:0008934: inositol monophosphate 1-phosphatase activity4.66E-04
39GO:0019156: isoamylase activity4.66E-04
40GO:0052833: inositol monophosphate 4-phosphatase activity4.66E-04
41GO:0004512: inositol-3-phosphate synthase activity4.66E-04
42GO:0047746: chlorophyllase activity4.66E-04
43GO:0009977: proton motive force dependent protein transmembrane transporter activity4.66E-04
44GO:0004617: phosphoglycerate dehydrogenase activity4.66E-04
45GO:0004089: carbonate dehydratase activity5.58E-04
46GO:0031072: heat shock protein binding5.58E-04
47GO:0008266: poly(U) RNA binding6.29E-04
48GO:0004324: ferredoxin-NADP+ reductase activity7.59E-04
49GO:0003913: DNA photolyase activity7.59E-04
50GO:0070402: NADPH binding7.59E-04
51GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor7.59E-04
52GO:0042802: identical protein binding9.47E-04
53GO:0051287: NAD binding1.07E-03
54GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.08E-03
55GO:0004072: aspartate kinase activity1.08E-03
56GO:0004375: glycine dehydrogenase (decarboxylating) activity1.08E-03
57GO:0004792: thiosulfate sulfurtransferase activity1.08E-03
58GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.08E-03
59GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.08E-03
60GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.08E-03
61GO:0046872: metal ion binding1.27E-03
62GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.44E-03
63GO:0008453: alanine-glyoxylate transaminase activity1.44E-03
64GO:0008891: glycolate oxidase activity1.44E-03
65GO:0004659: prenyltransferase activity1.44E-03
66GO:0003785: actin monomer binding1.83E-03
67GO:0004556: alpha-amylase activity2.26E-03
68GO:0000293: ferric-chelate reductase activity2.26E-03
69GO:0042578: phosphoric ester hydrolase activity2.26E-03
70GO:0016615: malate dehydrogenase activity2.26E-03
71GO:0019843: rRNA binding2.52E-03
72GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.71E-03
73GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.71E-03
74GO:0030060: L-malate dehydrogenase activity2.71E-03
75GO:0016491: oxidoreductase activity3.14E-03
76GO:0009881: photoreceptor activity3.20E-03
77GO:0004033: aldo-keto reductase (NADP) activity3.71E-03
78GO:0008135: translation factor activity, RNA binding4.24E-03
79GO:0030145: manganese ion binding4.48E-03
80GO:0003746: translation elongation factor activity4.91E-03
81GO:0003993: acid phosphatase activity5.13E-03
82GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity5.38E-03
83GO:0016844: strictosidine synthase activity5.38E-03
84GO:0050661: NADP binding5.60E-03
85GO:0008047: enzyme activator activity5.99E-03
86GO:0030234: enzyme regulator activity5.99E-03
87GO:0005089: Rho guanyl-nucleotide exchange factor activity6.62E-03
88GO:0005198: structural molecule activity7.11E-03
89GO:0000049: tRNA binding7.28E-03
90GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.39E-03
91GO:0005315: inorganic phosphate transmembrane transporter activity7.96E-03
92GO:0003954: NADH dehydrogenase activity1.09E-02
93GO:0004857: enzyme inhibitor activity1.09E-02
94GO:0005528: FK506 binding1.09E-02
95GO:0051082: unfolded protein binding1.22E-02
96GO:0008408: 3'-5' exonuclease activity1.25E-02
97GO:0008514: organic anion transmembrane transporter activity1.50E-02
98GO:0003756: protein disulfide isomerase activity1.50E-02
99GO:0004519: endonuclease activity1.59E-02
100GO:0047134: protein-disulfide reductase activity1.59E-02
101GO:0008080: N-acetyltransferase activity1.77E-02
102GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.77E-02
103GO:0004791: thioredoxin-disulfide reductase activity1.86E-02
104GO:0010181: FMN binding1.86E-02
105GO:0005509: calcium ion binding1.95E-02
106GO:0048038: quinone binding2.06E-02
107GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.25E-02
108GO:0016413: O-acetyltransferase activity2.57E-02
109GO:0015250: water channel activity2.67E-02
110GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.11E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0010368: chloroplast isoamylase complex0.00E+00
3GO:0009515: granal stacked thylakoid0.00E+00
4GO:0009507: chloroplast1.56E-62
5GO:0009535: chloroplast thylakoid membrane7.37E-60
6GO:0009534: chloroplast thylakoid2.94E-43
7GO:0009579: thylakoid5.89E-35
8GO:0009941: chloroplast envelope3.47E-28
9GO:0009570: chloroplast stroma2.76E-21
10GO:0010287: plastoglobule8.60E-17
11GO:0009543: chloroplast thylakoid lumen5.41E-15
12GO:0009523: photosystem II8.43E-13
13GO:0031977: thylakoid lumen2.53E-12
14GO:0009522: photosystem I4.86E-11
15GO:0030095: chloroplast photosystem II6.75E-11
16GO:0030076: light-harvesting complex1.01E-08
17GO:0009517: PSII associated light-harvesting complex II1.64E-07
18GO:0009654: photosystem II oxygen evolving complex1.59E-06
19GO:0009538: photosystem I reaction center3.20E-06
20GO:0048046: apoplast3.94E-06
21GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.54E-06
22GO:0019898: extrinsic component of membrane8.25E-06
23GO:0031361: integral component of thylakoid membrane2.09E-04
24GO:0009782: photosystem I antenna complex2.09E-04
25GO:0000791: euchromatin2.09E-04
26GO:0009783: photosystem II antenna complex2.09E-04
27GO:0031969: chloroplast membrane3.42E-04
28GO:0031304: intrinsic component of mitochondrial inner membrane4.66E-04
29GO:0030870: Mre11 complex4.66E-04
30GO:0016020: membrane6.48E-04
31GO:0033281: TAT protein transport complex7.59E-04
32GO:0042651: thylakoid membrane9.49E-04
33GO:0005960: glycine cleavage complex1.08E-03
34GO:0030286: dynein complex1.44E-03
35GO:0009544: chloroplast ATP synthase complex1.44E-03
36GO:0000795: synaptonemal complex1.83E-03
37GO:0009706: chloroplast inner membrane1.90E-03
38GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.26E-03
39GO:0010319: stromule2.66E-03
40GO:0009533: chloroplast stromal thylakoid3.20E-03
41GO:0009707: chloroplast outer membrane3.88E-03
42GO:0032040: small-subunit processome7.28E-03
43GO:0005938: cell cortex7.96E-03
44GO:0005777: peroxisome9.39E-03
45GO:0016021: integral component of membrane1.13E-02
46GO:0015629: actin cytoskeleton1.41E-02
47GO:0005623: cell1.57E-02
48GO:0000785: chromatin2.15E-02
49GO:0005778: peroxisomal membrane2.46E-02
50GO:0022626: cytosolic ribosome2.78E-02
51GO:0015934: large ribosomal subunit3.58E-02
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Gene type



Gene DE type