co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G42530

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009667: plastid inner membrane organization	0.00E+00
2	GO:1904526: regulation of microtubule binding	0.00E+00
3	GO:0009631: cold acclimation	3.16E-10
4	GO:0009409: response to cold	1.25E-06
5	GO:0009737: response to abscisic acid	8.78E-06
6	GO:0010025: wax biosynthetic process	2.01E-05
7	GO:0070417: cellular response to cold	5.70E-05
8	GO:0042335: cuticle development	6.44E-05
9	GO:0000302: response to reactive oxygen species	9.94E-05
10	GO:0009415: response to water	1.06E-04
11	GO:0071588: hydrogen peroxide mediated signaling pathway	1.50E-04
12	GO:0009609: response to symbiotic bacterium	1.50E-04
13	GO:0015812: gamma-aminobutyric acid transport	1.50E-04
14	GO:0080051: cutin transport	1.50E-04
15	GO:0000038: very long-chain fatty acid metabolic process	2.70E-04
16	GO:0005983: starch catabolic process	3.11E-04
17	GO:0015709: thiosulfate transport	3.42E-04
18	GO:0071422: succinate transmembrane transport	3.42E-04
19	GO:0071712: ER-associated misfolded protein catabolic process	3.42E-04
20	GO:0032527: protein exit from endoplasmic reticulum	3.42E-04
21	GO:0015908: fatty acid transport	3.42E-04
22	GO:0046168: glycerol-3-phosphate catabolic process	5.61E-04
23	GO:0032940: secretion by cell	5.61E-04
24	GO:0009414: response to water deprivation	6.85E-04
25	GO:0006970: response to osmotic stress	7.06E-04
26	GO:0009413: response to flooding	8.03E-04
27	GO:0051259: protein oligomerization	8.03E-04
28	GO:1901000: regulation of response to salt stress	8.03E-04
29	GO:0015729: oxaloacetate transport	8.03E-04
30	GO:0006072: glycerol-3-phosphate metabolic process	8.03E-04
31	GO:0030100: regulation of endocytosis	8.03E-04
32	GO:0042631: cellular response to water deprivation	9.99E-04
33	GO:0010222: stem vascular tissue pattern formation	1.06E-03
34	GO:0045727: positive regulation of translation	1.06E-03
35	GO:0022622: root system development	1.06E-03
36	GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain	1.06E-03
37	GO:0006552: leucine catabolic process	1.06E-03
38	GO:0071585: detoxification of cadmium ion	1.06E-03
39	GO:0048868: pollen tube development	1.07E-03
40	GO:0006461: protein complex assembly	1.35E-03
41	GO:0071423: malate transmembrane transport	1.35E-03
42	GO:0005975: carbohydrate metabolic process	1.63E-03
43	GO:0035435: phosphate ion transmembrane transport	1.65E-03
44	GO:1900425: negative regulation of defense response to bacterium	1.65E-03
45	GO:0006574: valine catabolic process	1.65E-03
46	GO:0010286: heat acclimation	1.68E-03
47	GO:0006633: fatty acid biosynthetic process	1.86E-03
48	GO:0010019: chloroplast-nucleus signaling pathway	1.98E-03
49	GO:0010555: response to mannitol	1.98E-03
50	GO:0071470: cellular response to osmotic stress	1.98E-03
51	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	1.98E-03
52	GO:0045926: negative regulation of growth	1.98E-03
53	GO:0009082: branched-chain amino acid biosynthetic process	1.98E-03
54	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.98E-03
55	GO:0006974: cellular response to DNA damage stimulus	2.10E-03
56	GO:0007623: circadian rhythm	2.10E-03
57	GO:1902074: response to salt	2.33E-03
58	GO:0032880: regulation of protein localization	2.33E-03
59	GO:0009610: response to symbiotic fungus	2.33E-03
60	GO:0030497: fatty acid elongation	2.33E-03
61	GO:0008272: sulfate transport	2.33E-03
62	GO:0050821: protein stabilization	2.70E-03
63	GO:0019827: stem cell population maintenance	2.70E-03
64	GO:0008610: lipid biosynthetic process	2.70E-03
65	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.70E-03
66	GO:0009819: drought recovery	2.70E-03
67	GO:0051276: chromosome organization	2.70E-03
68	GO:0032544: plastid translation	3.08E-03
69	GO:0009735: response to cytokinin	3.26E-03
70	GO:0010345: suberin biosynthetic process	3.49E-03
71	GO:0006631: fatty acid metabolic process	3.67E-03
72	GO:0009611: response to wounding	3.86E-03
73	GO:0042761: very long-chain fatty acid biosynthetic process	3.91E-03
74	GO:2000280: regulation of root development	3.91E-03
75	GO:0009644: response to high light intensity	4.30E-03
76	GO:0042538: hyperosmotic salinity response	4.99E-03
77	GO:0016024: CDP-diacylglycerol biosynthetic process	5.27E-03
78	GO:0045037: protein import into chloroplast stroma	5.27E-03
79	GO:0050826: response to freezing	5.75E-03
80	GO:0010588: cotyledon vascular tissue pattern formation	5.75E-03
81	GO:2000012: regulation of auxin polar transport	5.75E-03
82	GO:0010143: cutin biosynthetic process	6.25E-03
83	GO:0043086: negative regulation of catalytic activity	6.32E-03
84	GO:0016042: lipid catabolic process	7.58E-03
85	GO:0009651: response to salt stress	7.77E-03
86	GO:0030150: protein import into mitochondrial matrix	7.84E-03
87	GO:0051017: actin filament bundle assembly	7.84E-03
88	GO:0007017: microtubule-based process	8.40E-03
89	GO:0051260: protein homooligomerization	8.97E-03
90	GO:0009269: response to desiccation	8.97E-03
91	GO:0003333: amino acid transmembrane transport	8.97E-03
92	GO:0016998: cell wall macromolecule catabolic process	8.97E-03
93	GO:0010017: red or far-red light signaling pathway	9.56E-03
94	GO:0001944: vasculature development	1.02E-02
95	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.02E-02
96	GO:0071215: cellular response to abscisic acid stimulus	1.02E-02
97	GO:0019722: calcium-mediated signaling	1.08E-02
98	GO:0071555: cell wall organization	1.09E-02
99	GO:0008284: positive regulation of cell proliferation	1.14E-02
100	GO:0000413: protein peptidyl-prolyl isomerization	1.20E-02
101	GO:0009958: positive gravitropism	1.27E-02
102	GO:0010150: leaf senescence	1.32E-02
103	GO:0009749: response to glucose	1.41E-02
104	GO:0019252: starch biosynthetic process	1.41E-02
105	GO:0010583: response to cyclopentenone	1.55E-02
106	GO:0010090: trichome morphogenesis	1.62E-02
107	GO:0009416: response to light stimulus	1.63E-02
108	GO:0009828: plant-type cell wall loosening	1.69E-02
109	GO:0006310: DNA recombination	1.69E-02
110	GO:0019760: glucosinolate metabolic process	1.69E-02
111	GO:0007267: cell-cell signaling	1.76E-02
112	GO:0010411: xyloglucan metabolic process	2.15E-02
113	GO:0000160: phosphorelay signal transduction system	2.40E-02
114	GO:0006811: ion transport	2.48E-02
115	GO:0048527: lateral root development	2.56E-02
116	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.63E-02
117	GO:0010200: response to chitin	2.63E-02
118	GO:0000724: double-strand break repair via homologous recombination	2.65E-02
119	GO:0016051: carbohydrate biosynthetic process	2.74E-02
120	GO:0034599: cellular response to oxidative stress	2.83E-02
121	GO:0006839: mitochondrial transport	3.00E-02
122	GO:0009744: response to sucrose	3.28E-02
123	GO:0006869: lipid transport	3.33E-02
124	GO:0000209: protein polyubiquitination	3.37E-02
125	GO:0042546: cell wall biogenesis	3.37E-02
126	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.76E-02
127	GO:0006260: DNA replication	3.76E-02
128	GO:0009664: plant-type cell wall organization	3.85E-02
129	GO:0009809: lignin biosynthetic process	4.05E-02
130	GO:0006364: rRNA processing	4.05E-02
131	GO:0009736: cytokinin-activated signaling pathway	4.05E-02
132	GO:0008152: metabolic process	4.12E-02
133	GO:0006857: oligopeptide transport	4.26E-02
134	GO:0048367: shoot system development	4.67E-02
135	GO:0009873: ethylene-activated signaling pathway	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0010303: limit dextrinase activity	0.00E+00
2	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
3	GO:0051060: pullulanase activity	0.00E+00
4	GO:0009922: fatty acid elongase activity	1.61E-07
5	GO:0070330: aromatase activity	4.13E-06
6	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.01E-05
7	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.01E-05
8	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.01E-05
9	GO:0018685: alkane 1-monooxygenase activity	2.93E-05
10	GO:0004556: alpha-amylase activity	4.37E-05
11	GO:0005534: galactose binding	1.50E-04
12	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.50E-04
13	GO:0015245: fatty acid transporter activity	1.50E-04
14	GO:0044390: ubiquitin-like protein conjugating enzyme binding	3.42E-04
15	GO:0015117: thiosulfate transmembrane transporter activity	3.42E-04
16	GO:1901677: phosphate transmembrane transporter activity	3.42E-04
17	GO:0015180: L-alanine transmembrane transporter activity	3.42E-04
18	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	5.61E-04
19	GO:0005310: dicarboxylic acid transmembrane transporter activity	5.61E-04
20	GO:0015141: succinate transmembrane transporter activity	5.61E-04
21	GO:0052654: L-leucine transaminase activity	8.03E-04
22	GO:0052655: L-valine transaminase activity	8.03E-04
23	GO:0015189: L-lysine transmembrane transporter activity	8.03E-04
24	GO:0015181: arginine transmembrane transporter activity	8.03E-04
25	GO:0015131: oxaloacetate transmembrane transporter activity	8.03E-04
26	GO:0052656: L-isoleucine transaminase activity	8.03E-04
27	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	1.06E-03
28	GO:0005313: L-glutamate transmembrane transporter activity	1.06E-03
29	GO:0004084: branched-chain-amino-acid transaminase activity	1.06E-03
30	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.65E-03
31	GO:0043140: ATP-dependent 3'-5' DNA helicase activity	1.65E-03
32	GO:0004130: cytochrome-c peroxidase activity	1.65E-03
33	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.65E-03
34	GO:0016688: L-ascorbate peroxidase activity	1.65E-03
35	GO:0009378: four-way junction helicase activity	1.65E-03
36	GO:0043138: 3'-5' DNA helicase activity	1.98E-03
37	GO:0015140: malate transmembrane transporter activity	2.33E-03
38	GO:0004620: phospholipase activity	2.33E-03
39	GO:0015288: porin activity	2.70E-03
40	GO:0052747: sinapyl alcohol dehydrogenase activity	2.70E-03
41	GO:0016788: hydrolase activity, acting on ester bonds	3.74E-03
42	GO:0015020: glucuronosyltransferase activity	4.35E-03
43	GO:0004864: protein phosphatase inhibitor activity	4.35E-03
44	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.64E-03
45	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.27E-03
46	GO:0015116: sulfate transmembrane transporter activity	5.27E-03
47	GO:0052689: carboxylic ester hydrolase activity	5.44E-03
48	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	5.70E-03
49	GO:0015266: protein channel activity	5.75E-03
50	GO:0015171: amino acid transmembrane transporter activity	5.92E-03
51	GO:0008266: poly(U) RNA binding	6.25E-03
52	GO:0008083: growth factor activity	6.25E-03
53	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	6.25E-03
54	GO:0005528: FK506 binding	7.84E-03
55	GO:0016746: transferase activity, transferring acyl groups	7.84E-03
56	GO:0019843: rRNA binding	9.54E-03
57	GO:0018024: histone-lysine N-methyltransferase activity	1.14E-02
58	GO:0046910: pectinesterase inhibitor activity	1.23E-02
59	GO:0015297: antiporter activity	1.26E-02
60	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.27E-02
61	GO:0050662: coenzyme binding	1.34E-02
62	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.47E-02
63	GO:0051015: actin filament binding	1.62E-02
64	GO:0000156: phosphorelay response regulator activity	1.62E-02
65	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.68E-02
66	GO:0016791: phosphatase activity	1.69E-02
67	GO:0005200: structural constituent of cytoskeleton	1.76E-02
68	GO:0008375: acetylglucosaminyltransferase activity	2.07E-02
69	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.15E-02
70	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.23E-02
71	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.31E-02
72	GO:0005096: GTPase activator activity	2.40E-02
73	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.48E-02
74	GO:0061630: ubiquitin protein ligase activity	2.67E-02
75	GO:0003993: acid phosphatase activity	2.83E-02
76	GO:0042803: protein homodimerization activity	3.18E-02
77	GO:0005198: structural molecule activity	3.56E-02
78	GO:0003924: GTPase activity	3.74E-02
79	GO:0051287: NAD binding	3.76E-02
80	GO:0031625: ubiquitin protein ligase binding	4.36E-02
81	GO:0045330: aspartyl esterase activity	4.36E-02
82	GO:0003824: catalytic activity	4.41E-02
83	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.67E-02
84	GO:0030599: pectinesterase activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0034426: etioplast membrane	0.00E+00
2	GO:0031357: integral component of chloroplast inner membrane	1.11E-06
3	GO:0016020: membrane	1.43E-04
4	GO:0009941: chloroplast envelope	1.66E-04
5	GO:0009534: chloroplast thylakoid	2.47E-04
6	GO:0046658: anchored component of plasma membrane	4.97E-04
7	GO:0009897: external side of plasma membrane	5.61E-04
8	GO:0036513: Derlin-1 retrotranslocation complex	8.03E-04
9	GO:0009331: glycerol-3-phosphate dehydrogenase complex	8.03E-04
10	GO:0009527: plastid outer membrane	1.06E-03
11	GO:0009579: thylakoid	1.13E-03
12	GO:0005618: cell wall	1.16E-03
13	GO:0009570: chloroplast stroma	1.35E-03
14	GO:0005694: chromosome	1.40E-03
15	GO:0005798: Golgi-associated vesicle	1.65E-03
16	GO:0031305: integral component of mitochondrial inner membrane	2.70E-03
17	GO:0046930: pore complex	3.08E-03
18	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	3.08E-03
19	GO:0045298: tubulin complex	3.49E-03
20	GO:0031977: thylakoid lumen	3.67E-03
21	GO:0009505: plant-type cell wall	4.22E-03
22	GO:0000312: plastid small ribosomal subunit	6.25E-03
23	GO:0005875: microtubule associated complex	7.30E-03
24	GO:0005769: early endosome	7.30E-03
25	GO:0031225: anchored component of membrane	7.34E-03
26	GO:0010287: plastoglobule	9.03E-03
27	GO:0048046: apoplast	9.08E-03
28	GO:0009543: chloroplast thylakoid lumen	9.54E-03
29	GO:0015629: actin cytoskeleton	1.02E-02
30	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.08E-02
31	GO:0005576: extracellular region	1.11E-02
32	GO:0009535: chloroplast thylakoid membrane	1.16E-02
33	GO:0016021: integral component of membrane	1.43E-02
34	GO:0009707: chloroplast outer membrane	2.31E-02
35	GO:0005783: endoplasmic reticulum	3.14E-02
36	GO:0005856: cytoskeleton	3.56E-02
37	GO:0031966: mitochondrial membrane	3.85E-02
38	GO:0009506: plasmodesma	4.47E-02