co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G42360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045730: respiratory burst	0.00E+00
2	GO:0032499: detection of peptidoglycan	0.00E+00
3	GO:2001143: N-methylnicotinate transport	0.00E+00
4	GO:0002752: cell surface pattern recognition receptor signaling pathway	0.00E+00
5	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
6	GO:2001142: nicotinate transport	0.00E+00
7	GO:0019427: acetyl-CoA biosynthetic process from acetate	0.00E+00
8	GO:0009699: phenylpropanoid biosynthetic process	5.85E-09
9	GO:0045227: capsule polysaccharide biosynthetic process	3.37E-08
10	GO:0033358: UDP-L-arabinose biosynthetic process	3.37E-08
11	GO:0010200: response to chitin	2.64E-07
12	GO:0006468: protein phosphorylation	1.77E-06
13	GO:0002679: respiratory burst involved in defense response	5.76E-06
14	GO:0009225: nucleotide-sugar metabolic process	8.57E-06
15	GO:0006012: galactose metabolic process	2.33E-05
16	GO:0002229: defense response to oomycetes	5.45E-05
17	GO:0009808: lignin metabolic process	8.55E-05
18	GO:0051865: protein autoubiquitination	1.05E-04
19	GO:0006083: acetate metabolic process	1.12E-04
20	GO:0019567: arabinose biosynthetic process	1.12E-04
21	GO:0046244: salicylic acid catabolic process	1.12E-04
22	GO:0003400: regulation of COPII vesicle coating	1.12E-04
23	GO:0080157: regulation of plant-type cell wall organization or biogenesis	1.12E-04
24	GO:0032491: detection of molecule of fungal origin	1.12E-04
25	GO:0042759: long-chain fatty acid biosynthetic process	1.12E-04
26	GO:0055046: microgametogenesis	2.36E-04
27	GO:0046939: nucleotide phosphorylation	2.61E-04
28	GO:0009805: coumarin biosynthetic process	2.61E-04
29	GO:0042742: defense response to bacterium	3.12E-04
30	GO:0009809: lignin biosynthetic process	4.12E-04
31	GO:0006556: S-adenosylmethionine biosynthetic process	4.32E-04
32	GO:0006817: phosphate ion transport	5.85E-04
33	GO:0046513: ceramide biosynthetic process	6.19E-04
34	GO:0043207: response to external biotic stimulus	6.19E-04
35	GO:0009800: cinnamic acid biosynthetic process	6.19E-04
36	GO:0071323: cellular response to chitin	6.19E-04
37	GO:2000122: negative regulation of stomatal complex development	8.23E-04
38	GO:0071219: cellular response to molecule of bacterial origin	8.23E-04
39	GO:1902347: response to strigolactone	8.23E-04
40	GO:0009845: seed germination	9.39E-04
41	GO:0006461: protein complex assembly	1.04E-03
42	GO:0006559: L-phenylalanine catabolic process	1.27E-03
43	GO:1900425: negative regulation of defense response to bacterium	1.27E-03
44	GO:0002238: response to molecule of fungal origin	1.27E-03
45	GO:0007166: cell surface receptor signaling pathway	1.50E-03
46	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.52E-03
47	GO:0008219: cell death	1.65E-03
48	GO:0009817: defense response to fungus, incompatible interaction	1.65E-03
49	GO:0098869: cellular oxidant detoxification	1.78E-03
50	GO:0006744: ubiquinone biosynthetic process	1.78E-03
51	GO:0000338: protein deneddylation	1.78E-03
52	GO:0016310: phosphorylation	1.88E-03
53	GO:0045010: actin nucleation	2.06E-03
54	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.06E-03
55	GO:0009819: drought recovery	2.06E-03
56	GO:0009611: response to wounding	2.09E-03
57	GO:0006972: hyperosmotic response	2.35E-03
58	GO:0009932: cell tip growth	2.35E-03
59	GO:0010262: somatic embryogenesis	2.35E-03
60	GO:0010052: guard cell differentiation	2.35E-03
61	GO:0006839: mitochondrial transport	2.37E-03
62	GO:0007338: single fertilization	2.66E-03
63	GO:0090333: regulation of stomatal closure	2.66E-03
64	GO:0080167: response to karrikin	2.88E-03
65	GO:0008202: steroid metabolic process	2.97E-03
66	GO:0019538: protein metabolic process	3.30E-03
67	GO:0007064: mitotic sister chromatid cohesion	3.30E-03
68	GO:0006032: chitin catabolic process	3.30E-03
69	GO:0009698: phenylpropanoid metabolic process	3.65E-03
70	GO:0000272: polysaccharide catabolic process	3.65E-03
71	GO:0015706: nitrate transport	4.00E-03
72	GO:0046274: lignin catabolic process	4.36E-03
73	GO:0010167: response to nitrate	5.13E-03
74	GO:0090351: seedling development	5.13E-03
75	GO:0080147: root hair cell development	5.93E-03
76	GO:0048511: rhythmic process	6.78E-03
77	GO:0098542: defense response to other organism	6.78E-03
78	GO:0003333: amino acid transmembrane transport	6.78E-03
79	GO:0016998: cell wall macromolecule catabolic process	6.78E-03
80	GO:0006730: one-carbon metabolic process	7.22E-03
81	GO:0040007: growth	7.67E-03
82	GO:0071215: cellular response to abscisic acid stimulus	7.67E-03
83	GO:0009561: megagametogenesis	8.13E-03
84	GO:0009306: protein secretion	8.13E-03
85	GO:0016036: cellular response to phosphate starvation	8.20E-03
86	GO:0042631: cellular response to water deprivation	9.08E-03
87	GO:0048868: pollen tube development	9.57E-03
88	GO:0016567: protein ubiquitination	9.73E-03
89	GO:0009646: response to absence of light	1.01E-02
90	GO:0048544: recognition of pollen	1.01E-02
91	GO:0009617: response to bacterium	1.05E-02
92	GO:0032502: developmental process	1.16E-02
93	GO:0009567: double fertilization forming a zygote and endosperm	1.27E-02
94	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.50E-02
95	GO:0009816: defense response to bacterium, incompatible interaction	1.50E-02
96	GO:0042128: nitrate assimilation	1.56E-02
97	GO:0006888: ER to Golgi vesicle-mediated transport	1.62E-02
98	GO:0048573: photoperiodism, flowering	1.62E-02
99	GO:0016049: cell growth	1.68E-02
100	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.75E-02
101	GO:0009813: flavonoid biosynthetic process	1.80E-02
102	GO:0009832: plant-type cell wall biogenesis	1.80E-02
103	GO:0046777: protein autophosphorylation	1.81E-02
104	GO:0006865: amino acid transport	1.99E-02
105	GO:0045087: innate immune response	2.06E-02
106	GO:0006631: fatty acid metabolic process	2.32E-02
107	GO:0006979: response to oxidative stress	2.41E-02
108	GO:0009640: photomorphogenesis	2.46E-02
109	GO:0009753: response to jasmonic acid	2.69E-02
110	GO:0006952: defense response	2.71E-02
111	GO:0009664: plant-type cell wall organization	2.89E-02
112	GO:0009585: red, far-red light phototransduction	3.04E-02
113	GO:0010224: response to UV-B	3.12E-02
114	GO:0009626: plant-type hypersensitive response	3.59E-02
115	GO:0006396: RNA processing	3.99E-02
116	GO:0009742: brassinosteroid mediated signaling pathway	4.08E-02
117	GO:0009738: abscisic acid-activated signaling pathway	4.29E-02
118	GO:0009555: pollen development	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0090416: nicotinate transporter activity	0.00E+00
2	GO:0005522: profilin binding	0.00E+00
3	GO:0016710: trans-cinnamate 4-monooxygenase activity	0.00E+00
4	GO:0047734: CDP-glycerol diphosphatase activity	0.00E+00
5	GO:0046409: p-coumarate 3-hydroxylase activity	0.00E+00
6	GO:2001080: chitosan binding	0.00E+00
7	GO:0090417: N-methylnicotinate transporter activity	0.00E+00
8	GO:0016301: kinase activity	3.18E-10
9	GO:0050373: UDP-arabinose 4-epimerase activity	3.37E-08
10	GO:0004674: protein serine/threonine kinase activity	1.47E-07
11	GO:0003978: UDP-glucose 4-epimerase activity	2.70E-07
12	GO:0005524: ATP binding	4.70E-06
13	GO:0003987: acetate-CoA ligase activity	1.12E-04
14	GO:0051669: fructan beta-fructosidase activity	1.12E-04
15	GO:0005090: Sar guanyl-nucleotide exchange factor activity	1.12E-04
16	GO:0031219: levanase activity	1.12E-04
17	GO:0030246: carbohydrate binding	1.25E-04
18	GO:0050291: sphingosine N-acyltransferase activity	2.61E-04
19	GO:0032934: sterol binding	2.61E-04
20	GO:1990585: hydroxyproline O-arabinosyltransferase activity	2.61E-04
21	GO:0008061: chitin binding	3.01E-04
22	GO:0004478: methionine adenosyltransferase activity	4.32E-04
23	GO:0045548: phenylalanine ammonia-lyase activity	4.32E-04
24	GO:0019201: nucleotide kinase activity	6.19E-04
25	GO:0019199: transmembrane receptor protein kinase activity	8.23E-04
26	GO:0047631: ADP-ribose diphosphatase activity	1.04E-03
27	GO:0016208: AMP binding	1.27E-03
28	GO:0051020: GTPase binding	1.52E-03
29	GO:0004017: adenylate kinase activity	1.52E-03
30	GO:0004656: procollagen-proline 4-dioxygenase activity	1.52E-03
31	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.91E-03
32	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.06E-03
33	GO:0052747: sinapyl alcohol dehydrogenase activity	2.06E-03
34	GO:0004525: ribonuclease III activity	2.06E-03
35	GO:0008142: oxysterol binding	2.35E-03
36	GO:0016207: 4-coumarate-CoA ligase activity	2.66E-03
37	GO:0015112: nitrate transmembrane transporter activity	2.97E-03
38	GO:0004568: chitinase activity	3.30E-03
39	GO:0045551: cinnamyl-alcohol dehydrogenase activity	4.00E-03
40	GO:0031418: L-ascorbic acid binding	5.93E-03
41	GO:0019706: protein-cysteine S-palmitoyltransferase activity	6.78E-03
42	GO:0033612: receptor serine/threonine kinase binding	6.78E-03
43	GO:0022891: substrate-specific transmembrane transporter activity	7.67E-03
44	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	8.20E-03
45	GO:0004842: ubiquitin-protein transferase activity	9.62E-03
46	GO:0004672: protein kinase activity	1.06E-02
47	GO:0042802: identical protein binding	1.12E-02
48	GO:0051015: actin filament binding	1.22E-02
49	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.33E-02
50	GO:0050660: flavin adenine dinucleotide binding	1.58E-02
51	GO:0030247: polysaccharide binding	1.62E-02
52	GO:0005096: GTPase activator activity	1.80E-02
53	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.06E-02
54	GO:0005515: protein binding	2.17E-02
55	GO:0005506: iron ion binding	2.34E-02
56	GO:0003824: catalytic activity	2.68E-02
57	GO:0009055: electron carrier activity	2.69E-02
58	GO:0015171: amino acid transmembrane transporter activity	3.27E-02
59	GO:0016874: ligase activity	3.75E-02
60	GO:0022857: transmembrane transporter activity	3.75E-02
61	GO:0003779: actin binding	3.83E-02
62	GO:0020037: heme binding	4.19E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	3.81E-10
2	GO:0016021: integral component of membrane	1.95E-09
3	GO:0032580: Golgi cisterna membrane	7.31E-05
4	GO:0005911: cell-cell junction	1.12E-04
5	GO:0090404: pollen tube tip	1.78E-04
6	GO:0009514: glyoxysome	2.35E-03
7	GO:0008180: COP9 signalosome	2.66E-03
8	GO:0005783: endoplasmic reticulum	5.03E-03
9	GO:0030176: integral component of endoplasmic reticulum membrane	5.13E-03
10	GO:0043234: protein complex	5.52E-03
11	GO:0005794: Golgi apparatus	6.12E-03
12	GO:0005770: late endosome	9.57E-03
13	GO:0005743: mitochondrial inner membrane	2.33E-02
14	GO:0090406: pollen tube	2.46E-02
15	GO:0031966: mitochondrial membrane	2.89E-02
16	GO:0009505: plant-type cell wall	3.16E-02
17	GO:0010008: endosome membrane	3.51E-02
18	GO:0005834: heterotrimeric G-protein complex	3.59E-02
19	GO:0005618: cell wall	4.57E-02