co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G42330

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051562: negative regulation of mitochondrial calcium ion concentration	0.00E+00
2	GO:0055091: phospholipid homeostasis	0.00E+00
3	GO:0035024: negative regulation of Rho protein signal transduction	0.00E+00
4	GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process	0.00E+00
5	GO:0070328: triglyceride homeostasis	0.00E+00
6	GO:0080050: regulation of seed development	0.00E+00
7	GO:0034775: glutathione transmembrane transport	0.00E+00
8	GO:0006751: glutathione catabolic process	3.36E-05
9	GO:0006955: immune response	6.38E-05
10	GO:0006468: protein phosphorylation	1.08E-04
11	GO:0000395: mRNA 5'-splice site recognition	1.27E-04
12	GO:0009865: pollen tube adhesion	1.27E-04
13	GO:0006680: glucosylceramide catabolic process	1.27E-04
14	GO:0034620: cellular response to unfolded protein	1.27E-04
15	GO:0090421: embryonic meristem initiation	1.27E-04
16	GO:1902265: abscisic acid homeostasis	1.27E-04
17	GO:0097298: regulation of nucleus size	1.27E-04
18	GO:0046938: phytochelatin biosynthetic process	1.27E-04
19	GO:0006811: ion transport	2.08E-04
20	GO:0052544: defense response by callose deposition in cell wall	2.14E-04
21	GO:0007166: cell surface receptor signaling pathway	2.76E-04
22	GO:0008616: queuosine biosynthetic process	2.94E-04
23	GO:0031407: oxylipin metabolic process	2.94E-04
24	GO:0010289: homogalacturonan biosynthetic process	2.94E-04
25	GO:0007000: nucleolus organization	2.94E-04
26	GO:0055088: lipid homeostasis	2.94E-04
27	GO:0006898: receptor-mediated endocytosis	2.94E-04
28	GO:0052542: defense response by callose deposition	2.94E-04
29	GO:0010468: regulation of gene expression	2.96E-04
30	GO:0070588: calcium ion transmembrane transport	3.60E-04
31	GO:0051211: anisotropic cell growth	4.86E-04
32	GO:0042344: indole glucosinolate catabolic process	4.86E-04
33	GO:0000280: nuclear division	4.86E-04
34	GO:0044210: 'de novo' CTP biosynthetic process	4.86E-04
35	GO:0016045: detection of bacterium	4.86E-04
36	GO:0010359: regulation of anion channel activity	4.86E-04
37	GO:0010288: response to lead ion	4.86E-04
38	GO:0045793: positive regulation of cell size	4.86E-04
39	GO:0090630: activation of GTPase activity	4.86E-04
40	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	4.86E-04
41	GO:0006473: protein acetylation	4.86E-04
42	GO:0009611: response to wounding	5.79E-04
43	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.55E-04
44	GO:0010200: response to chitin	6.55E-04
45	GO:0055089: fatty acid homeostasis	6.95E-04
46	GO:0015700: arsenite transport	6.95E-04
47	GO:0006355: regulation of transcription, DNA-templated	9.00E-04
48	GO:0042991: transcription factor import into nucleus	9.21E-04
49	GO:1902347: response to strigolactone	9.21E-04
50	GO:0009687: abscisic acid metabolic process	9.21E-04
51	GO:0051365: cellular response to potassium ion starvation	9.21E-04
52	GO:0009751: response to salicylic acid	1.09E-03
53	GO:0006873: cellular ion homeostasis	1.16E-03
54	GO:0048497: maintenance of floral organ identity	1.16E-03
55	GO:0032957: inositol trisphosphate metabolic process	1.16E-03
56	GO:0047484: regulation of response to osmotic stress	1.43E-03
57	GO:0010337: regulation of salicylic acid metabolic process	1.43E-03
58	GO:0080113: regulation of seed growth	1.71E-03
59	GO:2000037: regulation of stomatal complex patterning	1.71E-03
60	GO:0010310: regulation of hydrogen peroxide metabolic process	1.71E-03
61	GO:1901001: negative regulation of response to salt stress	1.71E-03
62	GO:2000033: regulation of seed dormancy process	1.71E-03
63	GO:0006470: protein dephosphorylation	1.87E-03
64	GO:0007155: cell adhesion	2.32E-03
65	GO:0009819: drought recovery	2.32E-03
66	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	2.32E-03
67	GO:0006997: nucleus organization	2.65E-03
68	GO:0009880: embryonic pattern specification	2.65E-03
69	GO:0001708: cell fate specification	3.00E-03
70	GO:0046685: response to arsenic-containing substance	3.00E-03
71	GO:0006970: response to osmotic stress	3.02E-03
72	GO:0007346: regulation of mitotic cell cycle	3.36E-03
73	GO:0016573: histone acetylation	3.36E-03
74	GO:0010018: far-red light signaling pathway	3.36E-03
75	GO:0019538: protein metabolic process	3.73E-03
76	GO:0006816: calcium ion transport	4.12E-03
77	GO:0006351: transcription, DNA-templated	4.29E-03
78	GO:0018107: peptidyl-threonine phosphorylation	4.93E-03
79	GO:0009651: response to salt stress	4.99E-03
80	GO:0048467: gynoecium development	5.36E-03
81	GO:0034605: cellular response to heat	5.36E-03
82	GO:0010030: positive regulation of seed germination	5.80E-03
83	GO:0042753: positive regulation of circadian rhythm	6.25E-03
84	GO:0018105: peptidyl-serine phosphorylation	6.27E-03
85	GO:2000377: regulation of reactive oxygen species metabolic process	6.71E-03
86	GO:0009863: salicylic acid mediated signaling pathway	6.71E-03
87	GO:0010187: negative regulation of seed germination	6.71E-03
88	GO:0009737: response to abscisic acid	7.18E-03
89	GO:0043622: cortical microtubule organization	7.19E-03
90	GO:0031408: oxylipin biosynthetic process	7.68E-03
91	GO:0051321: meiotic cell cycle	7.68E-03
92	GO:0006366: transcription from RNA polymerase II promoter	7.68E-03
93	GO:0048511: rhythmic process	7.68E-03
94	GO:0071456: cellular response to hypoxia	8.18E-03
95	GO:0010017: red or far-red light signaling pathway	8.18E-03
96	GO:0001944: vasculature development	8.69E-03
97	GO:0016310: phosphorylation	9.17E-03
98	GO:0006817: phosphate ion transport	9.21E-03
99	GO:0010089: xylem development	9.21E-03
100	GO:0010584: pollen exine formation	9.21E-03
101	GO:0000271: polysaccharide biosynthetic process	1.03E-02
102	GO:0042335: cuticle development	1.03E-02
103	GO:0007623: circadian rhythm	1.05E-02
104	GO:0048868: pollen tube development	1.09E-02
105	GO:0009960: endosperm development	1.09E-02
106	GO:0045489: pectin biosynthetic process	1.09E-02
107	GO:0071472: cellular response to salt stress	1.09E-02
108	GO:0009739: response to gibberellin	1.18E-02
109	GO:0008654: phospholipid biosynthetic process	1.20E-02
110	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.26E-02
111	GO:0035556: intracellular signal transduction	1.31E-02
112	GO:0016567: protein ubiquitination	1.33E-02
113	GO:0009639: response to red or far red light	1.44E-02
114	GO:0045893: positive regulation of transcription, DNA-templated	1.46E-02
115	GO:0010286: heat acclimation	1.50E-02
116	GO:0000910: cytokinesis	1.57E-02
117	GO:0001666: response to hypoxia	1.63E-02
118	GO:0010029: regulation of seed germination	1.70E-02
119	GO:0009816: defense response to bacterium, incompatible interaction	1.70E-02
120	GO:0048481: plant ovule development	1.97E-02
121	GO:0008219: cell death	1.97E-02
122	GO:0009867: jasmonic acid mediated signaling pathway	2.33E-02
123	GO:0007165: signal transduction	2.33E-02
124	GO:0045087: innate immune response	2.33E-02
125	GO:0016051: carbohydrate biosynthetic process	2.33E-02
126	GO:0045454: cell redox homeostasis	2.43E-02
127	GO:0045892: negative regulation of transcription, DNA-templated	2.47E-02
128	GO:0042542: response to hydrogen peroxide	2.72E-02
129	GO:0051707: response to other organism	2.80E-02
130	GO:0009644: response to high light intensity	2.96E-02
131	GO:0006979: response to oxidative stress	3.01E-02
132	GO:0000165: MAPK cascade	3.20E-02
133	GO:0009753: response to jasmonic acid	3.21E-02
134	GO:0009846: pollen germination	3.29E-02
135	GO:0042538: hyperosmotic salinity response	3.29E-02
136	GO:0009736: cytokinin-activated signaling pathway	3.46E-02
137	GO:0009585: red, far-red light phototransduction	3.46E-02
138	GO:0009873: ethylene-activated signaling pathway	3.86E-02
139	GO:0048367: shoot system development	3.98E-02
140	GO:0009626: plant-type hypersensitive response	4.07E-02
141	GO:0009740: gibberellic acid mediated signaling pathway	4.26E-02
142	GO:0042545: cell wall modification	4.35E-02
143	GO:0009624: response to nematode	4.44E-02
144	GO:0009908: flower development	4.78E-02
145	GO:0000398: mRNA splicing, via spliceosome	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0042171: lysophosphatidic acid acyltransferase activity	0.00E+00
2	GO:0004698: calcium-dependent protein kinase C activity	0.00E+00
3	GO:0017048: Rho GTPase binding	0.00E+00
4	GO:0003883: CTP synthase activity	7.24E-06
5	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	7.24E-06
6	GO:0016301: kinase activity	1.12E-05
7	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.65E-05
8	GO:0004348: glucosylceramidase activity	1.27E-04
9	GO:0071992: phytochelatin transmembrane transporter activity	1.27E-04
10	GO:0030627: pre-mRNA 5'-splice site binding	1.27E-04
11	GO:0046870: cadmium ion binding	1.27E-04
12	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	1.27E-04
13	GO:0005524: ATP binding	1.60E-04
14	GO:0016629: 12-oxophytodienoate reductase activity	2.94E-04
15	GO:0017022: myosin binding	2.94E-04
16	GO:0004103: choline kinase activity	2.94E-04
17	GO:0003839: gamma-glutamylcyclotransferase activity	2.94E-04
18	GO:0001078: transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	2.94E-04
19	GO:0008479: queuine tRNA-ribosyltransferase activity	2.94E-04
20	GO:0003840: gamma-glutamyltransferase activity	4.86E-04
21	GO:0036374: glutathione hydrolase activity	4.86E-04
22	GO:0004383: guanylate cyclase activity	4.86E-04
23	GO:0047325: inositol tetrakisphosphate 1-kinase activity	4.86E-04
24	GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity	4.86E-04
25	GO:0048487: beta-tubulin binding	6.95E-04
26	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	6.95E-04
27	GO:0001653: peptide receptor activity	6.95E-04
28	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	9.21E-04
29	GO:0004674: protein serine/threonine kinase activity	1.13E-03
30	GO:0004623: phospholipase A2 activity	1.16E-03
31	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.16E-03
32	GO:0010294: abscisic acid glucosyltransferase activity	1.16E-03
33	GO:0051020: GTPase binding	1.71E-03
34	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.78E-03
35	GO:0008308: voltage-gated anion channel activity	2.65E-03
36	GO:0000989: transcription factor activity, transcription factor binding	3.00E-03
37	GO:0004713: protein tyrosine kinase activity	3.73E-03
38	GO:0005262: calcium channel activity	4.93E-03
39	GO:0019888: protein phosphatase regulator activity	4.93E-03
40	GO:0005388: calcium-transporting ATPase activity	4.93E-03
41	GO:0004722: protein serine/threonine phosphatase activity	5.09E-03
42	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.36E-03
43	GO:0003712: transcription cofactor activity	5.80E-03
44	GO:0004707: MAP kinase activity	7.68E-03
45	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	8.18E-03
46	GO:0004402: histone acetyltransferase activity	1.03E-02
47	GO:0005515: protein binding	1.09E-02
48	GO:0010181: FMN binding	1.14E-02
49	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.50E-02
50	GO:0016597: amino acid binding	1.57E-02
51	GO:0004683: calmodulin-dependent protein kinase activity	1.83E-02
52	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.90E-02
53	GO:0005096: GTPase activator activity	2.04E-02
54	GO:0005516: calmodulin binding	2.06E-02
55	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.11E-02
56	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.41E-02
57	GO:0046872: metal ion binding	2.57E-02
58	GO:0043621: protein self-association	2.96E-02
59	GO:0035091: phosphatidylinositol binding	2.96E-02
60	GO:0044212: transcription regulatory region DNA binding	2.98E-02
61	GO:0043565: sequence-specific DNA binding	3.20E-02
62	GO:0016298: lipase activity	3.54E-02
63	GO:0008234: cysteine-type peptidase activity	3.72E-02
64	GO:0045330: aspartyl esterase activity	3.72E-02
65	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.16E-02
66	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.16E-02
67	GO:0016874: ligase activity	4.26E-02
68	GO:0030599: pectinesterase activity	4.26E-02
69	GO:0004842: ubiquitin-protein transferase activity	4.44E-02
70	GO:0016746: transferase activity, transferring acyl groups	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0070382: exocytic vesicle	1.27E-04
2	GO:0030133: transport vesicle	2.94E-04
3	GO:0005652: nuclear lamina	4.86E-04
4	GO:0045177: apical part of cell	6.95E-04
5	GO:0000243: commitment complex	1.43E-03
6	GO:0000793: condensed chromosome	1.43E-03
7	GO:0000794: condensed nuclear chromosome	2.01E-03
8	GO:0005634: nucleus	2.15E-03
9	GO:0071004: U2-type prespliceosome	2.32E-03
10	GO:0034399: nuclear periphery	2.32E-03
11	GO:0005685: U1 snRNP	3.00E-03
12	GO:0000159: protein phosphatase type 2A complex	4.12E-03
13	GO:0005938: cell cortex	4.93E-03
14	GO:0016607: nuclear speck	5.22E-03
15	GO:0010008: endosome membrane	5.22E-03
16	GO:0005768: endosome	6.60E-03
17	GO:0005758: mitochondrial intermembrane space	6.71E-03
18	GO:0031965: nuclear membrane	1.20E-02
19	GO:0005886: plasma membrane	1.68E-02
20	GO:0005802: trans-Golgi network	2.22E-02
21	GO:0031902: late endosome membrane	2.64E-02
22	GO:0005737: cytoplasm	2.78E-02
23	GO:0005743: mitochondrial inner membrane	2.79E-02
24	GO:0090406: pollen tube	2.80E-02
25	GO:0043231: intracellular membrane-bounded organelle	3.30E-02
26	GO:0005681: spliceosomal complex	3.89E-02
27	GO:0012505: endomembrane system	4.35E-02