Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G42210

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009661: chromoplast organization0.00E+00
2GO:0006720: isoprenoid metabolic process0.00E+00
3GO:0032780: negative regulation of ATPase activity0.00E+00
4GO:0046294: formaldehyde catabolic process0.00E+00
5GO:0016093: polyprenol metabolic process0.00E+00
6GO:0036172: thiamine salvage0.00E+00
7GO:0045747: positive regulation of Notch signaling pathway0.00E+00
8GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine0.00E+00
9GO:0032928: regulation of superoxide anion generation0.00E+00
10GO:0055114: oxidation-reduction process4.91E-08
11GO:0009853: photorespiration3.17E-05
12GO:0010190: cytochrome b6f complex assembly5.33E-05
13GO:0006120: mitochondrial electron transport, NADH to ubiquinone7.42E-05
14GO:0071461: cellular response to redox state1.69E-04
15GO:0048438: floral whorl development1.69E-04
16GO:0080065: 4-alpha-methyl-delta7-sterol oxidation1.69E-04
17GO:0016487: farnesol metabolic process1.69E-04
18GO:0071266: 'de novo' L-methionine biosynthetic process1.69E-04
19GO:0019346: transsulfuration1.69E-04
20GO:0019343: cysteine biosynthetic process via cystathionine1.69E-04
21GO:0010043: response to zinc ion3.72E-04
22GO:0010220: positive regulation of vernalization response3.83E-04
23GO:1904143: positive regulation of carotenoid biosynthetic process3.83E-04
24GO:0080183: response to photooxidative stress3.83E-04
25GO:0016122: xanthophyll metabolic process3.83E-04
26GO:2000030: regulation of response to red or far red light3.83E-04
27GO:2000071: regulation of defense response by callose deposition3.83E-04
28GO:0080005: photosystem stoichiometry adjustment3.83E-04
29GO:0009150: purine ribonucleotide metabolic process6.25E-04
30GO:0071492: cellular response to UV-A6.25E-04
31GO:0006696: ergosterol biosynthetic process6.25E-04
32GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation6.25E-04
33GO:0006013: mannose metabolic process6.25E-04
34GO:0008652: cellular amino acid biosynthetic process6.25E-04
35GO:1901562: response to paraquat6.25E-04
36GO:2001141: regulation of RNA biosynthetic process8.93E-04
37GO:0009067: aspartate family amino acid biosynthetic process8.93E-04
38GO:0034613: cellular protein localization1.18E-03
39GO:0070534: protein K63-linked ubiquitination1.18E-03
40GO:0071486: cellular response to high light intensity1.18E-03
41GO:0019464: glycine decarboxylation via glycine cleavage system1.18E-03
42GO:0009765: photosynthesis, light harvesting1.18E-03
43GO:0006221: pyrimidine nucleotide biosynthetic process1.18E-03
44GO:0006546: glycine catabolic process1.18E-03
45GO:0006662: glycerol ether metabolic process1.26E-03
46GO:0009229: thiamine diphosphate biosynthetic process1.50E-03
47GO:0016120: carotene biosynthetic process1.50E-03
48GO:0010117: photoprotection1.50E-03
49GO:0006301: postreplication repair1.85E-03
50GO:0010304: PSII associated light-harvesting complex II catabolic process1.85E-03
51GO:0016070: RNA metabolic process1.85E-03
52GO:0006555: methionine metabolic process1.85E-03
53GO:0031053: primary miRNA processing1.85E-03
54GO:0007035: vacuolar acidification1.85E-03
55GO:0009228: thiamine biosynthetic process1.85E-03
56GO:0000060: protein import into nucleus, translocation1.85E-03
57GO:0009117: nucleotide metabolic process1.85E-03
58GO:0010077: maintenance of inflorescence meristem identity2.22E-03
59GO:0019509: L-methionine salvage from methylthioadenosine2.22E-03
60GO:0010076: maintenance of floral meristem identity2.22E-03
61GO:0010016: shoot system morphogenesis2.22E-03
62GO:0010038: response to metal ion2.61E-03
63GO:0050790: regulation of catalytic activity2.61E-03
64GO:0009396: folic acid-containing compound biosynthetic process2.61E-03
65GO:0050821: protein stabilization3.02E-03
66GO:0045292: mRNA cis splicing, via spliceosome3.02E-03
67GO:0009787: regulation of abscisic acid-activated signaling pathway3.02E-03
68GO:0009704: de-etiolation3.02E-03
69GO:0071482: cellular response to light stimulus3.46E-03
70GO:0015996: chlorophyll catabolic process3.46E-03
71GO:0019430: removal of superoxide radicals3.46E-03
72GO:0034599: cellular response to oxidative stress3.81E-03
73GO:0046916: cellular transition metal ion homeostasis3.91E-03
74GO:0035999: tetrahydrofolate interconversion4.38E-03
75GO:0009688: abscisic acid biosynthetic process4.87E-03
76GO:0009682: induced systemic resistance5.38E-03
77GO:0043085: positive regulation of catalytic activity5.38E-03
78GO:0006879: cellular iron ion homeostasis5.38E-03
79GO:0006352: DNA-templated transcription, initiation5.38E-03
80GO:0006790: sulfur compound metabolic process5.91E-03
81GO:0010582: floral meristem determinacy5.91E-03
82GO:0051603: proteolysis involved in cellular protein catabolic process6.54E-03
83GO:0048440: carpel development7.02E-03
84GO:0010207: photosystem II assembly7.02E-03
85GO:0045454: cell redox homeostasis7.45E-03
86GO:0006487: protein N-linked glycosylation8.81E-03
87GO:0006508: proteolysis9.09E-03
88GO:0061077: chaperone-mediated protein folding1.01E-02
89GO:0016226: iron-sulfur cluster assembly1.08E-02
90GO:2000022: regulation of jasmonic acid mediated signaling pathway1.08E-02
91GO:0006012: galactose metabolic process1.14E-02
92GO:0016117: carotenoid biosynthetic process1.28E-02
93GO:0010118: stomatal movement1.36E-02
94GO:0015991: ATP hydrolysis coupled proton transport1.36E-02
95GO:0008654: phospholipid biosynthetic process1.58E-02
96GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.66E-02
97GO:0002229: defense response to oomycetes1.66E-02
98GO:0030163: protein catabolic process1.82E-02
99GO:0016579: protein deubiquitination2.07E-02
100GO:0016126: sterol biosynthetic process2.16E-02
101GO:0006950: response to stress2.42E-02
102GO:0009658: chloroplast organization2.42E-02
103GO:0007568: aging2.89E-02
104GO:0009867: jasmonic acid mediated signaling pathway3.08E-02
105GO:0006099: tricarboxylic acid cycle3.18E-02
106GO:0030001: metal ion transport3.38E-02
107GO:0000165: MAPK cascade4.23E-02
108GO:0031347: regulation of defense response4.23E-02
109GO:0009809: lignin biosynthetic process4.57E-02
110GO:0006486: protein glycosylation4.57E-02
111GO:0006417: regulation of translation4.91E-02
RankGO TermAdjusted P value
1GO:0047501: (+)-neomenthol dehydrogenase activity0.00E+00
2GO:0042030: ATPase inhibitor activity0.00E+00
3GO:0004417: hydroxyethylthiazole kinase activity0.00E+00
4GO:0052670: geraniol kinase activity0.00E+00
5GO:0052668: farnesol kinase activity0.00E+00
6GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
7GO:0043530: adenosine 5'-monophosphoramidase activity0.00E+00
8GO:0052671: geranylgeraniol kinase activity0.00E+00
9GO:0046905: phytoene synthase activity0.00E+00
10GO:0047504: (-)-menthol dehydrogenase activity0.00E+00
11GO:0018738: S-formylglutathione hydrolase activity0.00E+00
12GO:0047710: bis(5'-adenosyl)-triphosphatase activity0.00E+00
13GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity0.00E+00
14GO:0047627: adenylylsulfatase activity1.19E-05
15GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.19E-05
16GO:0016491: oxidoreductase activity1.05E-04
17GO:0016784: 3-mercaptopyruvate sulfurtransferase activity1.69E-04
18GO:0004123: cystathionine gamma-lyase activity1.69E-04
19GO:0004121: cystathionine beta-lyase activity1.69E-04
20GO:0051996: squalene synthase activity1.69E-04
21GO:0016783: sulfurtransferase activity1.69E-04
22GO:0004310: farnesyl-diphosphate farnesyltransferase activity3.83E-04
23GO:0004412: homoserine dehydrogenase activity3.83E-04
24GO:0004046: aminoacylase activity3.83E-04
25GO:0004180: carboxypeptidase activity6.25E-04
26GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity6.25E-04
27GO:0004848: ureidoglycolate hydrolase activity6.25E-04
28GO:0003962: cystathionine gamma-synthase activity6.25E-04
29GO:0003955: NAD(P)H dehydrogenase (quinone) activity6.25E-04
30GO:0005528: FK506 binding6.49E-04
31GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.03E-04
32GO:0000339: RNA cap binding8.93E-04
33GO:0000254: C-4 methylsterol oxidase activity8.93E-04
34GO:0004375: glycine dehydrogenase (decarboxylating) activity8.93E-04
35GO:0008106: alcohol dehydrogenase (NADP+) activity8.93E-04
36GO:0004792: thiosulfate sulfurtransferase activity8.93E-04
37GO:0047134: protein-disulfide reductase activity1.09E-03
38GO:0001053: plastid sigma factor activity1.18E-03
39GO:0016987: sigma factor activity1.18E-03
40GO:0004791: thioredoxin-disulfide reductase activity1.35E-03
41GO:0016853: isomerase activity1.35E-03
42GO:0048038: quinone binding1.54E-03
43GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.75E-03
44GO:0004605: phosphatidate cytidylyltransferase activity1.85E-03
45GO:0004784: superoxide dismutase activity1.85E-03
46GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity1.85E-03
47GO:0004559: alpha-mannosidase activity2.22E-03
48GO:0051920: peroxiredoxin activity2.22E-03
49GO:0016621: cinnamoyl-CoA reductase activity2.61E-03
50GO:0016209: antioxidant activity3.02E-03
51GO:0004034: aldose 1-epimerase activity3.02E-03
52GO:0015078: hydrogen ion transmembrane transporter activity3.46E-03
53GO:0046914: transition metal ion binding3.46E-03
54GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors3.91E-03
55GO:0071949: FAD binding3.91E-03
56GO:0003824: catalytic activity4.49E-03
57GO:0008047: enzyme activator activity4.87E-03
58GO:0004129: cytochrome-c oxidase activity5.38E-03
59GO:0046961: proton-transporting ATPase activity, rotational mechanism5.38E-03
60GO:0031072: heat shock protein binding6.46E-03
61GO:0015035: protein disulfide oxidoreductase activity9.27E-03
62GO:0004176: ATP-dependent peptidase activity1.01E-02
63GO:0008080: N-acetyltransferase activity1.43E-02
64GO:0016787: hydrolase activity1.44E-02
65GO:0050662: coenzyme binding1.51E-02
66GO:0008137: NADH dehydrogenase (ubiquinone) activity1.66E-02
67GO:0004843: thiol-dependent ubiquitin-specific protease activity1.66E-02
68GO:0004197: cysteine-type endopeptidase activity1.74E-02
69GO:0008237: metallopeptidase activity1.99E-02
70GO:0016168: chlorophyll binding2.24E-02
71GO:0004601: peroxidase activity2.42E-02
72GO:0008236: serine-type peptidase activity2.51E-02
73GO:0004222: metalloendopeptidase activity2.79E-02
74GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.08E-02
75GO:0004185: serine-type carboxypeptidase activity3.69E-02
76GO:0003899: DNA-directed 5'-3' RNA polymerase activity4.57E-02
77GO:0031625: ubiquitin protein ligase binding4.91E-02
78GO:0008234: cysteine-type peptidase activity4.91E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.08E-12
2GO:0005747: mitochondrial respiratory chain complex I1.39E-08
3GO:0009535: chloroplast thylakoid membrane2.15E-05
4GO:0045271: respiratory chain complex I3.68E-05
5GO:0005845: mRNA cap binding complex1.69E-04
6GO:0031972: chloroplast intermembrane space1.69E-04
7GO:0031969: chloroplast membrane1.92E-04
8GO:0005846: nuclear cap binding complex3.83E-04
9GO:0031966: mitochondrial membrane7.71E-04
10GO:0005960: glycine cleavage complex8.93E-04
11GO:0031372: UBC13-MMS2 complex1.18E-03
12GO:0009517: PSII associated light-harvesting complex II1.18E-03
13GO:0033179: proton-transporting V-type ATPase, V0 domain1.18E-03
14GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain1.50E-03
15GO:0010287: plastoglobule1.61E-03
16GO:0005759: mitochondrial matrix2.30E-03
17GO:0045273: respiratory chain complex II3.02E-03
18GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)3.02E-03
19GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.91E-03
20GO:0005739: mitochondrion6.46E-03
21GO:0005764: lysosome7.02E-03
22GO:0005758: mitochondrial intermembrane space8.81E-03
23GO:0009543: chloroplast thylakoid lumen1.13E-02
24GO:0009523: photosystem II1.58E-02
25GO:0009536: plastid1.91E-02
26GO:0005773: vacuole2.58E-02
27GO:0031977: thylakoid lumen3.49E-02
28GO:0009570: chloroplast stroma3.81E-02
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Gene type



Gene DE type