Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G42190

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031116: positive regulation of microtubule polymerization0.00E+00
2GO:0008298: intracellular mRNA localization0.00E+00
3GO:0006907: pinocytosis0.00E+00
4GO:1904281: positive regulation of transcription from RNA polymerase V promoter0.00E+00
5GO:1990280: RNA localization to chromatin0.00E+00
6GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
7GO:0016123: xanthophyll biosynthetic process1.16E-07
8GO:0016120: carotene biosynthetic process2.35E-05
9GO:0042371: vitamin K biosynthetic process1.31E-04
10GO:1902466: positive regulation of histone H3-K27 trimethylation1.31E-04
11GO:0048438: floral whorl development1.31E-04
12GO:1903705: positive regulation of production of siRNA involved in RNA interference1.31E-04
13GO:0080005: photosystem stoichiometry adjustment3.03E-04
14GO:0001578: microtubule bundle formation4.99E-04
15GO:0006760: folic acid-containing compound metabolic process4.99E-04
16GO:0007017: microtubule-based process5.12E-04
17GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center7.14E-04
18GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly7.14E-04
19GO:0090307: mitotic spindle assembly7.14E-04
20GO:0008033: tRNA processing8.42E-04
21GO:0031122: cytoplasmic microtubule organization9.47E-04
22GO:0046656: folic acid biosynthetic process9.47E-04
23GO:0006346: methylation-dependent chromatin silencing9.47E-04
24GO:0051322: anaphase9.47E-04
25GO:0031935: regulation of chromatin silencing9.47E-04
26GO:0009765: photosynthesis, light harvesting9.47E-04
27GO:0007020: microtubule nucleation9.47E-04
28GO:0046785: microtubule polymerization1.20E-03
29GO:0000741: karyogamy1.47E-03
30GO:0000910: cytokinesis1.49E-03
31GO:0009451: RNA modification1.72E-03
32GO:0010076: maintenance of floral meristem identity1.76E-03
33GO:0046654: tetrahydrofolate biosynthetic process1.76E-03
34GO:0010189: vitamin E biosynthetic process1.76E-03
35GO:0006401: RNA catabolic process2.06E-03
36GO:0048528: post-embryonic root development2.06E-03
37GO:1900056: negative regulation of leaf senescence2.06E-03
38GO:0080111: DNA demethylation2.06E-03
39GO:0009910: negative regulation of flower development2.37E-03
40GO:0042255: ribosome assembly2.39E-03
41GO:0006353: DNA-templated transcription, termination2.39E-03
42GO:0006402: mRNA catabolic process2.39E-03
43GO:0009793: embryo development ending in seed dormancy2.61E-03
44GO:0044030: regulation of DNA methylation2.73E-03
45GO:0009658: chloroplast organization2.90E-03
46GO:0000373: Group II intron splicing3.08E-03
47GO:0006098: pentose-phosphate shunt3.08E-03
48GO:0031425: chloroplast RNA processing3.46E-03
49GO:0009638: phototropism3.46E-03
50GO:0010380: regulation of chlorophyll biosynthetic process3.46E-03
51GO:0009870: defense response signaling pathway, resistance gene-dependent3.84E-03
52GO:0006949: syncytium formation3.84E-03
53GO:0009773: photosynthetic electron transport in photosystem I4.24E-03
54GO:0010582: floral meristem determinacy4.65E-03
55GO:0010628: positive regulation of gene expression5.08E-03
56GO:0009725: response to hormone5.08E-03
57GO:0006094: gluconeogenesis5.08E-03
58GO:0009767: photosynthetic electron transport chain5.08E-03
59GO:0010207: photosystem II assembly5.52E-03
60GO:0009266: response to temperature stimulus5.52E-03
61GO:0080188: RNA-directed DNA methylation5.97E-03
62GO:0006863: purine nucleobase transport6.43E-03
63GO:0007010: cytoskeleton organization6.91E-03
64GO:0080147: root hair cell development6.91E-03
65GO:0043622: cortical microtubule organization7.40E-03
66GO:0080092: regulation of pollen tube growth8.42E-03
67GO:0009831: plant-type cell wall modification involved in multidimensional cell growth8.95E-03
68GO:0016117: carotenoid biosynthetic process1.00E-02
69GO:0009958: positive gravitropism1.12E-02
70GO:0010197: polar nucleus fusion1.12E-02
71GO:0048868: pollen tube development1.12E-02
72GO:0008654: phospholipid biosynthetic process1.24E-02
73GO:0007166: cell surface receptor signaling pathway1.26E-02
74GO:0010193: response to ozone1.30E-02
75GO:0016032: viral process1.36E-02
76GO:0032502: developmental process1.36E-02
77GO:0006810: transport1.48E-02
78GO:0009828: plant-type cell wall loosening1.49E-02
79GO:0001666: response to hypoxia1.68E-02
80GO:0016126: sterol biosynthetic process1.68E-02
81GO:0015995: chlorophyll biosynthetic process1.89E-02
82GO:0080167: response to karrikin2.12E-02
83GO:0006811: ion transport2.18E-02
84GO:0007568: aging2.25E-02
85GO:0008283: cell proliferation2.88E-02
86GO:0009744: response to sucrose2.88E-02
87GO:0006260: DNA replication3.30E-02
88GO:0000165: MAPK cascade3.30E-02
89GO:0009664: plant-type cell wall organization3.39E-02
90GO:0006364: rRNA processing3.56E-02
91GO:0009585: red, far-red light phototransduction3.56E-02
92GO:0010224: response to UV-B3.65E-02
93GO:0006096: glycolytic process4.01E-02
94GO:0009553: embryo sac development4.48E-02
95GO:0009742: brassinosteroid mediated signaling pathway4.77E-02
RankGO TermAdjusted P value
1GO:0010276: phytol kinase activity0.00E+00
2GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
3GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
4GO:0045435: lycopene epsilon cyclase activity0.00E+00
5GO:0004654: polyribonucleotide nucleotidyltransferase activity1.31E-04
6GO:0016491: oxidoreductase activity2.01E-04
7GO:0005089: Rho guanyl-nucleotide exchange factor activity2.24E-04
8GO:0000175: 3'-5'-exoribonuclease activity2.95E-04
9GO:0004150: dihydroneopterin aldolase activity3.03E-04
10GO:0102083: 7,8-dihydromonapterin aldolase activity3.03E-04
11GO:0000900: translation repressor activity, nucleic acid binding4.99E-04
12GO:0003727: single-stranded RNA binding7.24E-04
13GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.47E-04
14GO:0043015: gamma-tubulin binding9.47E-04
15GO:0048038: quinone binding1.11E-03
16GO:0051011: microtubule minus-end binding1.20E-03
17GO:0003723: RNA binding1.31E-03
18GO:0004605: phosphatidate cytidylyltransferase activity1.47E-03
19GO:0004332: fructose-bisphosphate aldolase activity1.47E-03
20GO:0015631: tubulin binding1.76E-03
21GO:0003690: double-stranded DNA binding4.62E-03
22GO:0003887: DNA-directed DNA polymerase activity6.43E-03
23GO:0004519: endonuclease activity6.94E-03
24GO:0005345: purine nucleobase transmembrane transporter activity7.40E-03
25GO:0008408: 3'-5' exonuclease activity7.91E-03
26GO:0019843: rRNA binding7.95E-03
27GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.02E-02
28GO:0008017: microtubule binding1.15E-02
29GO:0010181: FMN binding1.18E-02
30GO:0004872: receptor activity1.24E-02
31GO:0005200: structural constituent of cytoskeleton1.55E-02
32GO:0008483: transaminase activity1.55E-02
33GO:0004712: protein serine/threonine/tyrosine kinase activity2.56E-02
34GO:0003777: microtubule motor activity3.83E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast2.66E-09
2GO:0030286: dynein complex1.44E-05
3GO:0009535: chloroplast thylakoid membrane3.34E-05
4GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.34E-04
5GO:0008274: gamma-tubulin ring complex3.03E-04
6GO:0000923: equatorial microtubule organizing center7.14E-04
7GO:0072686: mitotic spindle1.20E-03
8GO:0010005: cortical microtubule, transverse to long axis1.76E-03
9GO:0000123: histone acetyltransferase complex2.06E-03
10GO:0046930: pore complex2.73E-03
11GO:0000922: spindle pole3.08E-03
12GO:0005874: microtubule3.64E-03
13GO:0055028: cortical microtubule3.84E-03
14GO:0016324: apical plasma membrane3.84E-03
15GO:0005938: cell cortex5.08E-03
16GO:0009574: preprophase band5.08E-03
17GO:0030095: chloroplast photosystem II5.52E-03
18GO:0009706: chloroplast inner membrane6.35E-03
19GO:0005875: microtubule associated complex6.43E-03
20GO:0042651: thylakoid membrane7.40E-03
21GO:0009543: chloroplast thylakoid lumen7.95E-03
22GO:0009505: plant-type cell wall1.16E-02
23GO:0031969: chloroplast membrane2.12E-02
24GO:0005819: spindle2.56E-02
25GO:0031977: thylakoid lumen2.72E-02
26GO:0043231: intracellular membrane-bounded organelle3.44E-02
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Gene type



Gene DE type