co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G42040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:0006399: tRNA metabolic process	0.00E+00
4	GO:0061157: mRNA destabilization	0.00E+00
5	GO:0090706: specification of plant organ position	0.00E+00
6	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
7	GO:0010027: thylakoid membrane organization	5.87E-05
8	GO:0000476: maturation of 4.5S rRNA	8.78E-05
9	GO:0000967: rRNA 5'-end processing	8.78E-05
10	GO:0065002: intracellular protein transmembrane transport	8.78E-05
11	GO:0043007: maintenance of rDNA	8.78E-05
12	GO:0010450: inflorescence meristem growth	8.78E-05
13	GO:0043953: protein transport by the Tat complex	8.78E-05
14	GO:0018026: peptidyl-lysine monomethylation	2.08E-04
15	GO:0080181: lateral root branching	2.08E-04
16	GO:0034470: ncRNA processing	2.08E-04
17	GO:0006954: inflammatory response	3.48E-04
18	GO:0005977: glycogen metabolic process	3.48E-04
19	GO:0045165: cell fate commitment	3.48E-04
20	GO:0009405: pathogenesis	3.48E-04
21	GO:0015979: photosynthesis	3.49E-04
22	GO:0009650: UV protection	5.01E-04
23	GO:1901332: negative regulation of lateral root development	5.01E-04
24	GO:2001141: regulation of RNA biosynthetic process	5.01E-04
25	GO:0010239: chloroplast mRNA processing	5.01E-04
26	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	5.01E-04
27	GO:0010021: amylopectin biosynthetic process	6.66E-04
28	GO:0022622: root system development	6.66E-04
29	GO:1902183: regulation of shoot apical meristem development	8.44E-04
30	GO:0010158: abaxial cell fate specification	8.44E-04
31	GO:0042793: transcription from plastid promoter	1.03E-03
32	GO:0003006: developmental process involved in reproduction	1.03E-03
33	GO:0042549: photosystem II stabilization	1.03E-03
34	GO:1901259: chloroplast rRNA processing	1.23E-03
35	GO:0032880: regulation of protein localization	1.44E-03
36	GO:0009658: chloroplast organization	1.45E-03
37	GO:0030091: protein repair	1.66E-03
38	GO:0006605: protein targeting	1.66E-03
39	GO:0010093: specification of floral organ identity	1.89E-03
40	GO:0071482: cellular response to light stimulus	1.89E-03
41	GO:0010114: response to red light	1.94E-03
42	GO:2000024: regulation of leaf development	2.14E-03
43	GO:0048507: meristem development	2.14E-03
44	GO:0010205: photoinhibition	2.39E-03
45	GO:0019684: photosynthesis, light reaction	2.93E-03
46	GO:0009089: lysine biosynthetic process via diaminopimelate	2.93E-03
47	GO:1903507: negative regulation of nucleic acid-templated transcription	2.93E-03
48	GO:0006352: DNA-templated transcription, initiation	2.93E-03
49	GO:0006281: DNA repair	3.11E-03
50	GO:0071365: cellular response to auxin stimulus	3.21E-03
51	GO:0010582: floral meristem determinacy	3.21E-03
52	GO:2000012: regulation of auxin polar transport	3.50E-03
53	GO:0010207: photosystem II assembly	3.80E-03
54	GO:0006302: double-strand break repair	3.80E-03
55	GO:0048467: gynoecium development	3.80E-03
56	GO:0009933: meristem structural organization	3.80E-03
57	GO:0019853: L-ascorbic acid biosynthetic process	4.10E-03
58	GO:0010030: positive regulation of seed germination	4.10E-03
59	GO:0009944: polarity specification of adaxial/abaxial axis	4.74E-03
60	GO:0051321: meiotic cell cycle	5.42E-03
61	GO:0048511: rhythmic process	5.42E-03
62	GO:2000022: regulation of jasmonic acid mediated signaling pathway	5.76E-03
63	GO:0009411: response to UV	6.12E-03
64	GO:0071369: cellular response to ethylene stimulus	6.12E-03
65	GO:0006012: galactose metabolic process	6.12E-03
66	GO:0009306: protein secretion	6.48E-03
67	GO:0006284: base-excision repair	6.48E-03
68	GO:0005975: carbohydrate metabolic process	6.74E-03
69	GO:0008284: positive regulation of cell proliferation	6.86E-03
70	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	6.86E-03
71	GO:0042631: cellular response to water deprivation	7.24E-03
72	GO:0009958: positive gravitropism	7.62E-03
73	GO:0006520: cellular amino acid metabolic process	7.62E-03
74	GO:0009741: response to brassinosteroid	7.62E-03
75	GO:0010154: fruit development	7.62E-03
76	GO:0042752: regulation of circadian rhythm	8.02E-03
77	GO:0019252: starch biosynthetic process	8.42E-03
78	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	8.83E-03
79	GO:0010583: response to cyclopentenone	9.24E-03
80	GO:0032502: developmental process	9.24E-03
81	GO:0009567: double fertilization forming a zygote and endosperm	1.01E-02
82	GO:0009627: systemic acquired resistance	1.24E-02
83	GO:0016311: dephosphorylation	1.33E-02
84	GO:0006355: regulation of transcription, DNA-templated	1.34E-02
85	GO:0006499: N-terminal protein myristoylation	1.48E-02
86	GO:0010218: response to far red light	1.48E-02
87	GO:0048527: lateral root development	1.53E-02
88	GO:0009631: cold acclimation	1.53E-02
89	GO:0009637: response to blue light	1.63E-02
90	GO:0051707: response to other organism	1.95E-02
91	GO:0009640: photomorphogenesis	1.95E-02
92	GO:0031347: regulation of defense response	2.24E-02
93	GO:0009664: plant-type cell wall organization	2.29E-02
94	GO:0009909: regulation of flower development	2.60E-02
95	GO:0009740: gibberellic acid mediated signaling pathway	2.97E-02
96	GO:0009555: pollen development	3.21E-02
97	GO:0009742: brassinosteroid mediated signaling pathway	3.23E-02
98	GO:0040008: regulation of growth	4.43E-02
99	GO:0045490: pectin catabolic process	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
2	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
3	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
4	GO:0019156: isoamylase activity	2.08E-04
5	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.08E-04
6	GO:0016868: intramolecular transferase activity, phosphotransferases	2.08E-04
7	GO:0009977: proton motive force dependent protein transmembrane transporter activity	2.08E-04
8	GO:0090729: toxin activity	3.48E-04
9	GO:0016279: protein-lysine N-methyltransferase activity	6.66E-04
10	GO:0001053: plastid sigma factor activity	6.66E-04
11	GO:0004045: aminoacyl-tRNA hydrolase activity	6.66E-04
12	GO:0016987: sigma factor activity	6.66E-04
13	GO:0008725: DNA-3-methyladenine glycosylase activity	8.44E-04
14	GO:0004556: alpha-amylase activity	1.03E-03
15	GO:0004462: lactoylglutathione lyase activity	1.03E-03
16	GO:0042578: phosphoric ester hydrolase activity	1.03E-03
17	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.23E-03
18	GO:0030145: manganese ion binding	1.39E-03
19	GO:0004033: aldo-keto reductase (NADP) activity	1.66E-03
20	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.26E-03
21	GO:0015020: glucuronosyltransferase activity	2.65E-03
22	GO:0004521: endoribonuclease activity	3.21E-03
23	GO:0008083: growth factor activity	3.80E-03
24	GO:0005528: FK506 binding	4.74E-03
25	GO:0003714: transcription corepressor activity	4.74E-03
26	GO:0008408: 3'-5' exonuclease activity	5.42E-03
27	GO:0030570: pectate lyase activity	6.12E-03
28	GO:0003727: single-stranded RNA binding	6.48E-03
29	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.38E-02
30	GO:0005096: GTPase activator activity	1.43E-02
31	GO:0004722: protein serine/threonine phosphatase activity	1.61E-02
32	GO:0003993: acid phosphatase activity	1.68E-02
33	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.88E-02
34	GO:0043621: protein self-association	2.06E-02
35	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.41E-02
36	GO:0003677: DNA binding	2.79E-02
37	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.91E-02
38	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.91E-02
39	GO:0000166: nucleotide binding	3.21E-02
40	GO:0008026: ATP-dependent helicase activity	3.23E-02
41	GO:0016758: transferase activity, transferring hexosyl groups	3.57E-02
42	GO:0016829: lyase activity	3.85E-02
43	GO:0008017: microtubule binding	4.73E-02
44	GO:0008194: UDP-glycosyltransferase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	2.91E-09
4	GO:0009538: photosystem I reaction center	4.65E-05
5	GO:0031361: integral component of thylakoid membrane	8.78E-05
6	GO:0000791: euchromatin	8.78E-05
7	GO:0009535: chloroplast thylakoid membrane	1.87E-04
8	GO:0030870: Mre11 complex	2.08E-04
9	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.08E-04
10	GO:0009534: chloroplast thylakoid	3.10E-04
11	GO:0033281: TAT protein transport complex	3.48E-04
12	GO:0009531: secondary cell wall	5.01E-04
13	GO:0000795: synaptonemal complex	8.44E-04
14	GO:0009533: chloroplast stromal thylakoid	1.44E-03
15	GO:0009570: chloroplast stroma	2.12E-03
16	GO:0055028: cortical microtubule	2.65E-03
17	GO:0009508: plastid chromosome	3.50E-03
18	GO:0030095: chloroplast photosystem II	3.80E-03
19	GO:0009543: chloroplast thylakoid lumen	4.61E-03
20	GO:0009579: thylakoid	8.08E-03
21	GO:0009523: photosystem II	8.42E-03
22	GO:0000785: chromatin	9.24E-03
23	GO:0009295: nucleoid	1.05E-02
24	GO:0030529: intracellular ribonucleoprotein complex	1.14E-02
25	GO:0010287: plastoglobule	3.50E-02
26	GO:0005615: extracellular space	4.95E-02