co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G41905

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042362: fat-soluble vitamin biosynthetic process	0.00E+00
2	GO:0015746: citrate transport	0.00E+00
3	GO:0042430: indole-containing compound metabolic process	0.00E+00
4	GO:0001881: receptor recycling	0.00E+00
5	GO:0009856: pollination	0.00E+00
6	GO:0018293: protein-FAD linkage	0.00E+00
7	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
8	GO:0009853: photorespiration	1.91E-07
9	GO:0006099: tricarboxylic acid cycle	8.14E-06
10	GO:0009245: lipid A biosynthetic process	8.98E-05
11	GO:0031539: positive regulation of anthocyanin metabolic process	1.00E-04
12	GO:0090449: phloem glucosinolate loading	1.00E-04
13	GO:0009852: auxin catabolic process	1.00E-04
14	GO:1901349: glucosinolate transport	1.00E-04
15	GO:0055114: oxidation-reduction process	1.45E-04
16	GO:0006006: glucose metabolic process	2.03E-04
17	GO:0045905: positive regulation of translational termination	2.36E-04
18	GO:0045901: positive regulation of translational elongation	2.36E-04
19	GO:0006452: translational frameshifting	2.36E-04
20	GO:0009915: phloem sucrose loading	2.36E-04
21	GO:0008333: endosome to lysosome transport	3.92E-04
22	GO:0045793: positive regulation of cell size	3.92E-04
23	GO:0009963: positive regulation of flavonoid biosynthetic process	5.64E-04
24	GO:0032877: positive regulation of DNA endoreduplication	5.64E-04
25	GO:0006107: oxaloacetate metabolic process	5.64E-04
26	GO:0080022: primary root development	5.95E-04
27	GO:0015986: ATP synthesis coupled proton transport	6.86E-04
28	GO:0032366: intracellular sterol transport	7.50E-04
29	GO:0051781: positive regulation of cell division	7.50E-04
30	GO:0010363: regulation of plant-type hypersensitive response	7.50E-04
31	GO:0009697: salicylic acid biosynthetic process	9.47E-04
32	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	1.16E-03
33	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.38E-03
34	GO:0010189: vitamin E biosynthetic process	1.38E-03
35	GO:0022904: respiratory electron transport chain	1.62E-03
36	GO:0010044: response to aluminum ion	1.62E-03
37	GO:1900056: negative regulation of leaf senescence	1.62E-03
38	GO:0048658: anther wall tapetum development	1.87E-03
39	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.87E-03
40	GO:0010099: regulation of photomorphogenesis	2.14E-03
41	GO:0022900: electron transport chain	2.14E-03
42	GO:0080167: response to karrikin	2.40E-03
43	GO:0080144: amino acid homeostasis	2.41E-03
44	GO:0006754: ATP biosynthetic process	2.41E-03
45	GO:0098656: anion transmembrane transport	2.41E-03
46	GO:0006855: drug transmembrane transport	2.70E-03
47	GO:0000103: sulfate assimilation	3.00E-03
48	GO:0043069: negative regulation of programmed cell death	3.00E-03
49	GO:0051603: proteolysis involved in cellular protein catabolic process	3.22E-03
50	GO:0052544: defense response by callose deposition in cell wall	3.31E-03
51	GO:0008361: regulation of cell size	3.63E-03
52	GO:0006820: anion transport	3.63E-03
53	GO:0006807: nitrogen compound metabolic process	3.95E-03
54	GO:0006108: malate metabolic process	3.95E-03
55	GO:0007034: vacuolar transport	4.30E-03
56	GO:0009266: response to temperature stimulus	4.30E-03
57	GO:0019853: L-ascorbic acid biosynthetic process	4.64E-03
58	GO:0042753: positive regulation of circadian rhythm	5.00E-03
59	GO:0006636: unsaturated fatty acid biosynthetic process	5.00E-03
60	GO:0006071: glycerol metabolic process	5.00E-03
61	GO:0006487: protein N-linked glycosylation	5.37E-03
62	GO:0015992: proton transport	6.14E-03
63	GO:0048511: rhythmic process	6.14E-03
64	GO:0061077: chaperone-mediated protein folding	6.14E-03
65	GO:0042744: hydrogen peroxide catabolic process	6.28E-03
66	GO:0010017: red or far-red light signaling pathway	6.54E-03
67	GO:0006633: fatty acid biosynthetic process	6.93E-03
68	GO:0006413: translational initiation	7.10E-03
69	GO:0009735: response to cytokinin	7.24E-03
70	GO:0010089: xylem development	7.35E-03
71	GO:0042147: retrograde transport, endosome to Golgi	7.78E-03
72	GO:0034220: ion transmembrane transport	8.21E-03
73	GO:0015991: ATP hydrolysis coupled proton transport	8.21E-03
74	GO:0048653: anther development	8.21E-03
75	GO:0009958: positive gravitropism	8.65E-03
76	GO:0006662: glycerol ether metabolic process	8.65E-03
77	GO:0009617: response to bacterium	9.09E-03
78	GO:0006623: protein targeting to vacuole	9.56E-03
79	GO:0010193: response to ozone	1.00E-02
80	GO:0000302: response to reactive oxygen species	1.00E-02
81	GO:0010252: auxin homeostasis	1.15E-02
82	GO:0006511: ubiquitin-dependent protein catabolic process	1.20E-02
83	GO:0000910: cytokinesis	1.25E-02
84	GO:0006499: N-terminal protein myristoylation	1.68E-02
85	GO:0010218: response to far red light	1.68E-02
86	GO:0010043: response to zinc ion	1.74E-02
87	GO:0045454: cell redox homeostasis	1.76E-02
88	GO:0034599: cellular response to oxidative stress	1.91E-02
89	GO:0006869: lipid transport	1.93E-02
90	GO:0006979: response to oxidative stress	2.01E-02
91	GO:0016042: lipid catabolic process	2.11E-02
92	GO:0009640: photomorphogenesis	2.22E-02
93	GO:0010114: response to red light	2.22E-02
94	GO:0009926: auxin polar transport	2.22E-02
95	GO:0000209: protein polyubiquitination	2.29E-02
96	GO:0031347: regulation of defense response	2.55E-02
97	GO:0009809: lignin biosynthetic process	2.75E-02
98	GO:0009585: red, far-red light phototransduction	2.75E-02
99	GO:0010224: response to UV-B	2.81E-02
100	GO:0006857: oligopeptide transport	2.88E-02
101	GO:0009651: response to salt stress	2.91E-02
102	GO:0006096: glycolytic process	3.09E-02
103	GO:0009740: gibberellic acid mediated signaling pathway	3.38E-02
104	GO:0016036: cellular response to phosphate starvation	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity	0.00E+00
2	GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity	0.00E+00
3	GO:0010176: homogentisate phytyltransferase activity	0.00E+00
4	GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
5	GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
6	GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity	0.00E+00
7	GO:0050152: omega-amidase activity	0.00E+00
8	GO:0031177: phosphopantetheine binding	2.28E-05
9	GO:0000035: acyl binding	3.24E-05
10	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	5.73E-05
11	GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity	1.00E-04
12	GO:0080047: GDP-L-galactose phosphorylase activity	1.00E-04
13	GO:0090448: glucosinolate:proton symporter activity	1.00E-04
14	GO:0080048: GDP-D-glucose phosphorylase activity	1.00E-04
15	GO:0015137: citrate transmembrane transporter activity	1.00E-04
16	GO:0004129: cytochrome-c oxidase activity	1.52E-04
17	GO:0004298: threonine-type endopeptidase activity	3.94E-04
18	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	5.64E-04
19	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	6.40E-04
20	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	7.50E-04
21	GO:0050302: indole-3-acetaldehyde oxidase activity	7.50E-04
22	GO:0004576: oligosaccharyl transferase activity	7.50E-04
23	GO:0004659: prenyltransferase activity	7.50E-04
24	GO:0010011: auxin binding	7.50E-04
25	GO:0008137: NADH dehydrogenase (ubiquinone) activity	7.83E-04
26	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	9.47E-04
27	GO:0008177: succinate dehydrogenase (ubiquinone) activity	9.47E-04
28	GO:0016651: oxidoreductase activity, acting on NAD(P)H	9.47E-04
29	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.16E-03
30	GO:0015238: drug transmembrane transporter activity	1.51E-03
31	GO:0005085: guanyl-nucleotide exchange factor activity	1.62E-03
32	GO:0008121: ubiquinol-cytochrome-c reductase activity	1.62E-03
33	GO:0050897: cobalt ion binding	1.65E-03
34	GO:0052747: sinapyl alcohol dehydrogenase activity	1.87E-03
35	GO:0043022: ribosome binding	1.87E-03
36	GO:0015288: porin activity	1.87E-03
37	GO:0008308: voltage-gated anion channel activity	2.14E-03
38	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.41E-03
39	GO:0008794: arsenate reductase (glutaredoxin) activity	3.31E-03
40	GO:0046961: proton-transporting ATPase activity, rotational mechanism	3.31E-03
41	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.63E-03
42	GO:0015035: protein disulfide oxidoreductase activity	4.55E-03
43	GO:0005528: FK506 binding	5.37E-03
44	GO:0015297: antiporter activity	7.27E-03
45	GO:0047134: protein-disulfide reductase activity	7.78E-03
46	GO:0003743: translation initiation factor activity	8.90E-03
47	GO:0004791: thioredoxin-disulfide reductase activity	9.10E-03
48	GO:0004872: receptor activity	9.56E-03
49	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.10E-02
50	GO:0004601: peroxidase activity	1.18E-02
51	GO:0016788: hydrolase activity, acting on ester bonds	1.20E-02
52	GO:0005507: copper ion binding	1.27E-02
53	GO:0015250: water channel activity	1.30E-02
54	GO:0051213: dioxygenase activity	1.30E-02
55	GO:0008233: peptidase activity	1.44E-02
56	GO:0052689: carboxylic ester hydrolase activity	1.62E-02
57	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.86E-02
58	GO:0003746: translation elongation factor activity	1.86E-02
59	GO:0003993: acid phosphatase activity	1.91E-02
60	GO:0004722: protein serine/threonine phosphatase activity	1.93E-02
61	GO:0051539: 4 iron, 4 sulfur cluster binding	2.03E-02
62	GO:0050661: NADP binding	2.03E-02
63	GO:0004364: glutathione transferase activity	2.16E-02
64	GO:0005215: transporter activity	2.25E-02
65	GO:0009055: electron carrier activity	2.33E-02
66	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.48E-02
67	GO:0051287: NAD binding	2.55E-02
68	GO:0003690: double-stranded DNA binding	2.81E-02
69	GO:0016298: lipase activity	2.81E-02
70	GO:0031625: ubiquitin protein ligase binding	2.95E-02
71	GO:0008289: lipid binding	3.02E-02
72	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.17E-02
73	GO:0022857: transmembrane transporter activity	3.38E-02
74	GO:0020037: heme binding	3.51E-02
75	GO:0016746: transferase activity, transferring acyl groups	3.61E-02
76	GO:0019843: rRNA binding	4.14E-02
77	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.54E-02
78	GO:0003735: structural constituent of ribosome	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0005747: mitochondrial respiratory chain complex I	2.07E-11
2	GO:0045271: respiratory chain complex I	1.58E-09
3	GO:0005773: vacuole	9.51E-08
4	GO:0045273: respiratory chain complex II	5.30E-07
5	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	5.30E-07
6	GO:0031966: mitochondrial membrane	7.12E-07
7	GO:0005753: mitochondrial proton-transporting ATP synthase complex	6.70E-06
8	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	9.05E-06
9	GO:0005739: mitochondrion	3.26E-05
10	GO:0005750: mitochondrial respiratory chain complex III	2.31E-04
11	GO:0070469: respiratory chain	3.58E-04
12	GO:0005839: proteasome core complex	3.94E-04
13	GO:0016020: membrane	4.70E-04
14	GO:0033180: proton-transporting V-type ATPase, V1 domain	5.64E-04
15	GO:0005774: vacuolar membrane	7.94E-04
16	GO:0008250: oligosaccharyltransferase complex	9.47E-04
17	GO:0005746: mitochondrial respiratory chain	9.47E-04
18	GO:0005771: multivesicular body	1.16E-03
19	GO:0030904: retromer complex	1.16E-03
20	GO:0005788: endoplasmic reticulum lumen	1.17E-03
21	GO:0009536: plastid	1.54E-03
22	GO:0046930: pore complex	2.14E-03
23	GO:0000502: proteasome complex	3.11E-03
24	GO:0005783: endoplasmic reticulum	3.66E-03
25	GO:0005578: proteinaceous extracellular matrix	3.95E-03
26	GO:0031012: extracellular matrix	3.95E-03
27	GO:0005758: mitochondrial intermembrane space	5.37E-03
28	GO:0005741: mitochondrial outer membrane	6.14E-03
29	GO:0005759: mitochondrial matrix	6.93E-03
30	GO:0005886: plasma membrane	7.27E-03
31	GO:0005829: cytosol	8.13E-03
32	GO:0005618: cell wall	1.19E-02
33	GO:0009707: chloroplast outer membrane	1.57E-02
34	GO:0031902: late endosome membrane	2.10E-02
35	GO:0022626: cytosolic ribosome	3.68E-02
36	GO:0009543: chloroplast thylakoid lumen	4.14E-02