co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G41490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019307: mannose biosynthetic process	0.00E+00
2	GO:0045047: protein targeting to ER	0.00E+00
3	GO:0030970: retrograde protein transport, ER to cytosol	0.00E+00
4	GO:0019428: allantoin biosynthetic process	0.00E+00
5	GO:0006511: ubiquitin-dependent protein catabolic process	4.07E-39
6	GO:0051603: proteolysis involved in cellular protein catabolic process	1.21E-12
7	GO:0030433: ubiquitin-dependent ERAD pathway	4.43E-12
8	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	9.59E-11
9	GO:0034976: response to endoplasmic reticulum stress	2.12E-10
10	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.21E-09
11	GO:0030163: protein catabolic process	5.98E-09
12	GO:0043248: proteasome assembly	4.69E-08
13	GO:0006457: protein folding	9.60E-08
14	GO:0046686: response to cadmium ion	2.29E-07
15	GO:0051788: response to misfolded protein	2.70E-07
16	GO:0042176: regulation of protein catabolic process	1.23E-05
17	GO:0045454: cell redox homeostasis	1.96E-05
18	GO:0010043: response to zinc ion	6.79E-05
19	GO:0006144: purine nucleobase metabolic process	6.91E-05
20	GO:0035266: meristem growth	6.91E-05
21	GO:0001560: regulation of cell growth by extracellular stimulus	6.91E-05
22	GO:0007292: female gamete generation	6.91E-05
23	GO:0019628: urate catabolic process	6.91E-05
24	GO:0015786: UDP-glucose transport	1.66E-04
25	GO:0009651: response to salt stress	2.25E-04
26	GO:0009553: embryo sac development	2.70E-04
27	GO:0015783: GDP-fucose transport	2.81E-04
28	GO:0060968: regulation of gene silencing	2.81E-04
29	GO:0010498: proteasomal protein catabolic process	2.81E-04
30	GO:0006013: mannose metabolic process	2.81E-04
31	GO:0055074: calcium ion homeostasis	2.81E-04
32	GO:0009647: skotomorphogenesis	4.06E-04
33	GO:0010255: glucose mediated signaling pathway	4.06E-04
34	GO:0051289: protein homotetramerization	4.06E-04
35	GO:0001676: long-chain fatty acid metabolic process	4.06E-04
36	GO:0009298: GDP-mannose biosynthetic process	4.06E-04
37	GO:0072334: UDP-galactose transmembrane transport	4.06E-04
38	GO:0010363: regulation of plant-type hypersensitive response	5.42E-04
39	GO:0036065: fucosylation	6.87E-04
40	GO:0048827: phyllome development	8.40E-04
41	GO:0048232: male gamete generation	8.40E-04
42	GO:0009554: megasporogenesis	9.99E-04
43	GO:1901001: negative regulation of response to salt stress	9.99E-04
44	GO:0045087: innate immune response	1.12E-03
45	GO:0048528: post-embryonic root development	1.17E-03
46	GO:0006605: protein targeting	1.34E-03
47	GO:0010078: maintenance of root meristem identity	1.34E-03
48	GO:0031540: regulation of anthocyanin biosynthetic process	1.34E-03
49	GO:0030968: endoplasmic reticulum unfolded protein response	1.53E-03
50	GO:0098656: anion transmembrane transport	1.73E-03
51	GO:0046685: response to arsenic-containing substance	1.73E-03
52	GO:0009793: embryo development ending in seed dormancy	1.92E-03
53	GO:0010449: root meristem growth	1.93E-03
54	GO:0043067: regulation of programmed cell death	1.93E-03
55	GO:0048829: root cap development	2.14E-03
56	GO:0048364: root development	2.19E-03
57	GO:0048229: gametophyte development	2.36E-03
58	GO:0010015: root morphogenesis	2.36E-03
59	GO:0006820: anion transport	2.58E-03
60	GO:0010102: lateral root morphogenesis	2.82E-03
61	GO:0009933: meristem structural organization	3.06E-03
62	GO:0019853: L-ascorbic acid biosynthetic process	3.30E-03
63	GO:0090351: seedling development	3.30E-03
64	GO:0009969: xyloglucan biosynthetic process	3.30E-03
65	GO:0006406: mRNA export from nucleus	3.81E-03
66	GO:0006487: protein N-linked glycosylation	3.81E-03
67	GO:0015992: proton transport	4.35E-03
68	GO:0051028: mRNA transport	5.50E-03
69	GO:0000413: protein peptidyl-prolyl isomerization	5.80E-03
70	GO:0015991: ATP hydrolysis coupled proton transport	5.80E-03
71	GO:0048868: pollen tube development	6.11E-03
72	GO:0048825: cotyledon development	6.74E-03
73	GO:0009556: microsporogenesis	6.74E-03
74	GO:0010193: response to ozone	7.07E-03
75	GO:0009567: double fertilization forming a zygote and endosperm	8.08E-03
76	GO:0016049: cell growth	1.06E-02
77	GO:0006886: intracellular protein transport	1.09E-02
78	GO:0009817: defense response to fungus, incompatible interaction	1.10E-02
79	GO:0009832: plant-type cell wall biogenesis	1.14E-02
80	GO:0010311: lateral root formation	1.14E-02
81	GO:0006499: N-terminal protein myristoylation	1.18E-02
82	GO:0000724: double-strand break repair via homologous recombination	1.26E-02
83	GO:0009408: response to heat	1.31E-02
84	GO:0006631: fatty acid metabolic process	1.47E-02
85	GO:0008283: cell proliferation	1.56E-02
86	GO:0000209: protein polyubiquitination	1.60E-02
87	GO:0009965: leaf morphogenesis	1.69E-02
88	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.78E-02
89	GO:0009736: cytokinin-activated signaling pathway	1.92E-02
90	GO:0006486: protein glycosylation	1.92E-02
91	GO:0009735: response to cytokinin	2.13E-02
92	GO:0048367: shoot system development	2.22E-02
93	GO:0048316: seed development	2.22E-02
94	GO:0007275: multicellular organism development	2.46E-02
95	GO:0051726: regulation of cell cycle	2.58E-02
96	GO:0009742: brassinosteroid mediated signaling pathway	2.58E-02
97	GO:0009790: embryo development	3.24E-02
98	GO:0009617: response to bacterium	4.14E-02
99	GO:0006979: response to oxidative stress	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0033971: hydroxyisourate hydrolase activity	0.00E+00
2	GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity	0.00E+00
3	GO:0004615: phosphomannomutase activity	0.00E+00
4	GO:0055105: ubiquitin-protein transferase inhibitor activity	0.00E+00
5	GO:0004298: threonine-type endopeptidase activity	2.82E-45
6	GO:0008233: peptidase activity	1.02E-27
7	GO:0036402: proteasome-activating ATPase activity	9.59E-11
8	GO:0003756: protein disulfide isomerase activity	1.13E-09
9	GO:0017025: TBP-class protein binding	2.45E-08
10	GO:0016887: ATPase activity	7.23E-06
11	GO:1990381: ubiquitin-specific protease binding	6.91E-05
12	GO:0030234: enzyme regulator activity	7.43E-05
13	GO:0004175: endopeptidase activity	1.36E-04
14	GO:0005457: GDP-fucose transmembrane transporter activity	2.81E-04
15	GO:0051082: unfolded protein binding	2.82E-04
16	GO:0009678: hydrogen-translocating pyrophosphatase activity	4.06E-04
17	GO:0005460: UDP-glucose transmembrane transporter activity	4.06E-04
18	GO:0016853: isomerase activity	4.23E-04
19	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	5.42E-04
20	GO:0005459: UDP-galactose transmembrane transporter activity	6.87E-04
21	GO:0102391: decanoate--CoA ligase activity	9.99E-04
22	GO:0008320: protein transmembrane transporter activity	1.17E-03
23	GO:0004467: long-chain fatty acid-CoA ligase activity	1.17E-03
24	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	1.17E-03
25	GO:0004427: inorganic diphosphatase activity	1.17E-03
26	GO:0015288: porin activity	1.34E-03
27	GO:0008308: voltage-gated anion channel activity	1.53E-03
28	GO:0008417: fucosyltransferase activity	1.73E-03
29	GO:0046961: proton-transporting ATPase activity, rotational mechanism	2.36E-03
30	GO:0043130: ubiquitin binding	3.81E-03
31	GO:0004540: ribonuclease activity	4.35E-03
32	GO:0005515: protein binding	5.09E-03
33	GO:0008514: organic anion transmembrane transporter activity	5.20E-03
34	GO:0030246: carbohydrate binding	6.24E-03
35	GO:0003746: translation elongation factor activity	1.30E-02
36	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.74E-02
37	GO:0000166: nucleotide binding	2.33E-02
38	GO:0005509: calcium ion binding	4.33E-02

Rank	GO Term	Adjusted P value
1	GO:0019774: proteasome core complex, beta-subunit complex	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0000502: proteasome complex	4.19E-71
4	GO:0005839: proteasome core complex	2.82E-45
5	GO:0019773: proteasome core complex, alpha-subunit complex	1.13E-20
6	GO:0008541: proteasome regulatory particle, lid subcomplex	1.09E-13
7	GO:0031595: nuclear proteasome complex	8.67E-13
8	GO:0005829: cytosol	1.02E-12
9	GO:0008540: proteasome regulatory particle, base subcomplex	1.21E-11
10	GO:0005788: endoplasmic reticulum lumen	1.63E-10
11	GO:0031597: cytosolic proteasome complex	2.14E-10
12	GO:0005774: vacuolar membrane	3.33E-10
13	GO:0005783: endoplasmic reticulum	2.06E-07
14	GO:0005737: cytoplasm	2.21E-06
15	GO:0005773: vacuole	4.17E-06
16	GO:0005634: nucleus	6.40E-05
17	GO:0031234: extrinsic component of cytoplasmic side of plasma membrane	6.91E-05
18	GO:0000836: Hrd1p ubiquitin ligase complex	6.91E-05
19	GO:0044322: endoplasmic reticulum quality control compartment	6.91E-05
20	GO:0022626: cytosolic ribosome	1.03E-04
21	GO:0005838: proteasome regulatory particle	2.81E-04
22	GO:0046861: glyoxysomal membrane	2.81E-04
23	GO:0036513: Derlin-1 retrotranslocation complex	4.06E-04
24	GO:0033180: proton-transporting V-type ATPase, V1 domain	4.06E-04
25	GO:0032580: Golgi cisterna membrane	5.83E-04
26	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.17E-03
27	GO:0005886: plasma membrane	1.42E-03
28	GO:0000326: protein storage vacuole	1.53E-03
29	GO:0046930: pore complex	1.53E-03
30	GO:0009514: glyoxysome	1.53E-03
31	GO:0009506: plasmodesma	1.56E-03
32	GO:0005769: early endosome	3.56E-03
33	GO:0005741: mitochondrial outer membrane	4.35E-03
34	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	7.82E-03
35	GO:0005794: Golgi apparatus	9.15E-03
36	GO:0005643: nuclear pore	1.10E-02
37	GO:0005819: spindle	1.38E-02
38	GO:0009505: plant-type cell wall	1.40E-02
39	GO:0048046: apoplast	1.55E-02
40	GO:0005635: nuclear envelope	2.02E-02
41	GO:0009507: chloroplast	2.45E-02
42	GO:0005777: peroxisome	2.67E-02
43	GO:0005623: cell	2.96E-02
44	GO:0009524: phragmoplast	3.01E-02
45	GO:0009705: plant-type vacuole membrane	3.65E-02
46	GO:0005802: trans-Golgi network	3.72E-02
47	GO:0016020: membrane	3.89E-02