co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G41250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016093: polyprenol metabolic process	0.00E+00
2	GO:0009661: chromoplast organization	0.00E+00
3	GO:0042908: xenobiotic transport	0.00E+00
4	GO:0071244: cellular response to carbon dioxide	0.00E+00
5	GO:0018293: protein-FAD linkage	0.00E+00
6	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
7	GO:0032780: negative regulation of ATPase activity	0.00E+00
8	GO:0010336: gibberellic acid homeostasis	0.00E+00
9	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
10	GO:0046294: formaldehyde catabolic process	0.00E+00
11	GO:0055114: oxidation-reduction process	6.88E-07
12	GO:0009903: chloroplast avoidance movement	2.76E-06
13	GO:0071483: cellular response to blue light	5.29E-05
14	GO:0009902: chloroplast relocation	5.29E-05
15	GO:0009904: chloroplast accumulation movement	8.37E-05
16	GO:0006555: methionine metabolic process	1.22E-04
17	GO:0019509: L-methionine salvage from methylthioadenosine	1.67E-04
18	GO:0050790: regulation of catalytic activity	2.19E-04
19	GO:0007623: circadian rhythm	2.26E-04
20	GO:0006102: isocitrate metabolic process	2.76E-04
21	GO:0046467: membrane lipid biosynthetic process	2.82E-04
22	GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport	2.82E-04
23	GO:0006835: dicarboxylic acid transport	2.82E-04
24	GO:0000305: response to oxygen radical	2.82E-04
25	GO:0010036: response to boron-containing substance	2.82E-04
26	GO:1902265: abscisic acid homeostasis	2.82E-04
27	GO:0010100: negative regulation of photomorphogenesis	3.40E-04
28	GO:0051453: regulation of intracellular pH	4.86E-04
29	GO:0000103: sulfate assimilation	5.67E-04
30	GO:0006898: receptor-mediated endocytosis	6.19E-04
31	GO:0007154: cell communication	6.19E-04
32	GO:0097054: L-glutamate biosynthetic process	6.19E-04
33	GO:1904143: positive regulation of carotenoid biosynthetic process	6.19E-04
34	GO:0080183: response to photooxidative stress	6.19E-04
35	GO:0043100: pyrimidine nucleobase salvage	6.19E-04
36	GO:0042754: negative regulation of circadian rhythm	6.19E-04
37	GO:2000030: regulation of response to red or far red light	6.19E-04
38	GO:0071230: cellular response to amino acid stimulus	1.00E-03
39	GO:1901562: response to paraquat	1.00E-03
40	GO:0044375: regulation of peroxisome size	1.00E-03
41	GO:0016570: histone modification	1.00E-03
42	GO:0031022: nuclear migration along microfilament	1.00E-03
43	GO:0019419: sulfate reduction	1.00E-03
44	GO:0006099: tricarboxylic acid cycle	1.11E-03
45	GO:0015700: arsenite transport	1.44E-03
46	GO:0046713: borate transport	1.44E-03
47	GO:0006537: glutamate biosynthetic process	1.44E-03
48	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.44E-03
49	GO:0006749: glutathione metabolic process	1.92E-03
50	GO:0010021: amylopectin biosynthetic process	1.92E-03
51	GO:0006646: phosphatidylethanolamine biosynthetic process	1.92E-03
52	GO:0070534: protein K63-linked ubiquitination	1.92E-03
53	GO:0019676: ammonia assimilation cycle	1.92E-03
54	GO:0015743: malate transport	1.92E-03
55	GO:0071585: detoxification of cadmium ion	1.92E-03
56	GO:0015846: polyamine transport	1.92E-03
57	GO:0010600: regulation of auxin biosynthetic process	1.92E-03
58	GO:0051603: proteolysis involved in cellular protein catabolic process	2.19E-03
59	GO:0009909: regulation of flower development	2.39E-03
60	GO:0016120: carotene biosynthetic process	2.46E-03
61	GO:0010236: plastoquinone biosynthetic process	2.46E-03
62	GO:0006520: cellular amino acid metabolic process	2.58E-03
63	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	3.03E-03
64	GO:0006301: postreplication repair	3.03E-03
65	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.03E-03
66	GO:0070814: hydrogen sulfide biosynthetic process	3.03E-03
67	GO:0048317: seed morphogenesis	3.03E-03
68	GO:1902456: regulation of stomatal opening	3.03E-03
69	GO:0080167: response to karrikin	3.42E-03
70	GO:0017148: negative regulation of translation	3.65E-03
71	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.65E-03
72	GO:0010189: vitamin E biosynthetic process	3.65E-03
73	GO:1901001: negative regulation of response to salt stress	3.65E-03
74	GO:0080060: integument development	3.65E-03
75	GO:0044550: secondary metabolite biosynthetic process	3.89E-03
76	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	4.30E-03
77	GO:0045995: regulation of embryonic development	4.30E-03
78	GO:0006368: transcription elongation from RNA polymerase II promoter	4.30E-03
79	GO:0070370: cellular heat acclimation	4.30E-03
80	GO:0019745: pentacyclic triterpenoid biosynthetic process	4.30E-03
81	GO:0050821: protein stabilization	4.99E-03
82	GO:0031540: regulation of anthocyanin biosynthetic process	4.99E-03
83	GO:0009231: riboflavin biosynthetic process	4.99E-03
84	GO:0016559: peroxisome fission	4.99E-03
85	GO:0030091: protein repair	4.99E-03
86	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.99E-03
87	GO:0006508: proteolysis	5.61E-03
88	GO:0048574: long-day photoperiodism, flowering	5.72E-03
89	GO:0015996: chlorophyll catabolic process	5.72E-03
90	GO:0046685: response to arsenic-containing substance	6.48E-03
91	GO:0010206: photosystem II repair	6.48E-03
92	GO:0006811: ion transport	6.60E-03
93	GO:0009753: response to jasmonic acid	6.89E-03
94	GO:0010205: photoinhibition	7.28E-03
95	GO:0009098: leucine biosynthetic process	7.28E-03
96	GO:0009637: response to blue light	7.59E-03
97	GO:0009739: response to gibberellin	7.61E-03
98	GO:0034599: cellular response to oxidative stress	7.94E-03
99	GO:0045036: protein targeting to chloroplast	8.11E-03
100	GO:0009970: cellular response to sulfate starvation	8.11E-03
101	GO:0072593: reactive oxygen species metabolic process	8.97E-03
102	GO:0006879: cellular iron ion homeostasis	8.97E-03
103	GO:0000272: polysaccharide catabolic process	8.97E-03
104	GO:0016485: protein processing	8.97E-03
105	GO:0006816: calcium ion transport	8.97E-03
106	GO:0009773: photosynthetic electron transport in photosystem I	8.97E-03
107	GO:0009640: photomorphogenesis	9.80E-03
108	GO:0046686: response to cadmium ion	1.03E-02
109	GO:0009785: blue light signaling pathway	1.08E-02
110	GO:0009718: anthocyanin-containing compound biosynthetic process	1.08E-02
111	GO:0009767: photosynthetic electron transport chain	1.08E-02
112	GO:0030048: actin filament-based movement	1.08E-02
113	GO:0006855: drug transmembrane transport	1.14E-02
114	GO:0007015: actin filament organization	1.18E-02
115	GO:0006970: response to osmotic stress	1.27E-02
116	GO:0007031: peroxisome organization	1.28E-02
117	GO:0009723: response to ethylene	1.39E-02
118	GO:0051017: actin filament bundle assembly	1.48E-02
119	GO:0006487: protein N-linked glycosylation	1.48E-02
120	GO:0019344: cysteine biosynthetic process	1.48E-02
121	GO:0008299: isoprenoid biosynthetic process	1.59E-02
122	GO:0006874: cellular calcium ion homeostasis	1.59E-02
123	GO:0035556: intracellular signal transduction	1.60E-02
124	GO:0010017: red or far-red light signaling pathway	1.81E-02
125	GO:0016226: iron-sulfur cluster assembly	1.81E-02
126	GO:0045454: cell redox homeostasis	1.90E-02
127	GO:0040007: growth	1.93E-02
128	GO:0006012: galactose metabolic process	1.93E-02
129	GO:0009693: ethylene biosynthetic process	1.93E-02
130	GO:0006817: phosphate ion transport	2.05E-02
131	GO:0042391: regulation of membrane potential	2.29E-02
132	GO:0080022: primary root development	2.29E-02
133	GO:0042631: cellular response to water deprivation	2.29E-02
134	GO:0010182: sugar mediated signaling pathway	2.42E-02
135	GO:0009741: response to brassinosteroid	2.42E-02
136	GO:0009751: response to salicylic acid	2.43E-02
137	GO:0009058: biosynthetic process	2.50E-02
138	GO:0006814: sodium ion transport	2.54E-02
139	GO:0042752: regulation of circadian rhythm	2.54E-02
140	GO:0019252: starch biosynthetic process	2.67E-02
141	GO:0008654: phospholipid biosynthetic process	2.67E-02
142	GO:0009851: auxin biosynthetic process	2.67E-02
143	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.81E-02
144	GO:0019761: glucosinolate biosynthetic process	2.94E-02
145	GO:0009630: gravitropism	2.94E-02
146	GO:0006464: cellular protein modification process	3.22E-02
147	GO:0009567: double fertilization forming a zygote and endosperm	3.22E-02
148	GO:0010228: vegetative to reproductive phase transition of meristem	3.42E-02
149	GO:0010027: thylakoid membrane organization	3.65E-02
150	GO:0010029: regulation of seed germination	3.80E-02
151	GO:0042128: nitrate assimilation	3.95E-02
152	GO:0010411: xyloglucan metabolic process	4.10E-02
153	GO:0015995: chlorophyll biosynthetic process	4.10E-02
154	GO:0009651: response to salt stress	4.35E-02
155	GO:0018298: protein-chromophore linkage	4.41E-02
156	GO:0009407: toxin catabolic process	4.72E-02
157	GO:0010043: response to zinc ion	4.88E-02
158	GO:0007568: aging	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
2	GO:0017153: sodium:dicarboxylate symporter activity	0.00E+00
3	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
4	GO:0042030: ATPase inhibitor activity	0.00E+00
5	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
6	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
7	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
8	GO:0000250: lanosterol synthase activity	0.00E+00
9	GO:0050486: intramolecular transferase activity, transferring hydroxy groups	0.00E+00
10	GO:0015930: glutamate synthase activity	0.00E+00
11	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
12	GO:0004450: isocitrate dehydrogenase (NADP+) activity	3.65E-06
13	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.31E-05
14	GO:0008106: alcohol dehydrogenase (NADP+) activity	2.94E-05
15	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	2.94E-05
16	GO:0016491: oxidoreductase activity	4.92E-05
17	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.22E-04
18	GO:0080139: borate efflux transmembrane transporter activity	2.82E-04
19	GO:0016783: sulfurtransferase activity	2.82E-04
20	GO:0071992: phytochelatin transmembrane transporter activity	2.82E-04
21	GO:0004307: ethanolaminephosphotransferase activity	2.82E-04
22	GO:0010313: phytochrome binding	2.82E-04
23	GO:0016041: glutamate synthase (ferredoxin) activity	2.82E-04
24	GO:0004328: formamidase activity	2.82E-04
25	GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity	2.82E-04
26	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.82E-04
27	GO:0045153: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity	2.82E-04
28	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	2.82E-04
29	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.82E-04
30	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	2.82E-04
31	GO:0016780: phosphotransferase activity, for other substituted phosphate groups	2.82E-04
32	GO:0008066: glutamate receptor activity	2.82E-04
33	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	2.82E-04
34	GO:0000989: transcription factor activity, transcription factor binding	4.10E-04
35	GO:0004046: aminoacylase activity	6.19E-04
36	GO:0004142: diacylglycerol cholinephosphotransferase activity	6.19E-04
37	GO:0004362: glutathione-disulfide reductase activity	6.19E-04
38	GO:0015179: L-amino acid transmembrane transporter activity	6.19E-04
39	GO:0043425: bHLH transcription factor binding	6.19E-04
40	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	6.19E-04
41	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	6.19E-04
42	GO:0033201: alpha-1,4-glucan synthase activity	6.19E-04
43	GO:0050347: trans-octaprenyltranstransferase activity	6.19E-04
44	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	6.19E-04
45	GO:0009973: adenylyl-sulfate reductase activity	6.19E-04
46	GO:1990269: RNA polymerase II C-terminal domain phosphoserine binding	6.19E-04
47	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	6.19E-04
48	GO:0030572: phosphatidyltransferase activity	6.19E-04
49	GO:0008236: serine-type peptidase activity	7.33E-04
50	GO:0004557: alpha-galactosidase activity	1.00E-03
51	GO:0003861: 3-isopropylmalate dehydratase activity	1.00E-03
52	GO:0003935: GTP cyclohydrolase II activity	1.00E-03
53	GO:0004781: sulfate adenylyltransferase (ATP) activity	1.00E-03
54	GO:0001076: transcription factor activity, RNA polymerase II transcription factor binding	1.00E-03
55	GO:0004180: carboxypeptidase activity	1.00E-03
56	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.00E-03
57	GO:0004373: glycogen (starch) synthase activity	1.00E-03
58	GO:0003913: DNA photolyase activity	1.00E-03
59	GO:0004792: thiosulfate sulfurtransferase activity	1.44E-03
60	GO:0015203: polyamine transmembrane transporter activity	1.44E-03
61	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.44E-03
62	GO:0046715: borate transmembrane transporter activity	1.44E-03
63	GO:0048027: mRNA 5'-UTR binding	1.44E-03
64	GO:0016866: intramolecular transferase activity	1.92E-03
65	GO:0004301: epoxide hydrolase activity	1.92E-03
66	GO:0009011: starch synthase activity	1.92E-03
67	GO:0008177: succinate dehydrogenase (ubiquinone) activity	2.46E-03
68	GO:0051538: 3 iron, 4 sulfur cluster binding	2.46E-03
69	GO:0015301: anion:anion antiporter activity	2.46E-03
70	GO:0005452: inorganic anion exchanger activity	2.46E-03
71	GO:0000293: ferric-chelate reductase activity	3.03E-03
72	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	3.03E-03
73	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	3.03E-03
74	GO:0004709: MAP kinase kinase kinase activity	3.03E-03
75	GO:0004197: cysteine-type endopeptidase activity	3.39E-03
76	GO:0016161: beta-amylase activity	3.65E-03
77	GO:0005261: cation channel activity	3.65E-03
78	GO:0009881: photoreceptor activity	4.30E-03
79	GO:0015140: malate transmembrane transporter activity	4.30E-03
80	GO:0004869: cysteine-type endopeptidase inhibitor activity	4.99E-03
81	GO:0030674: protein binding, bridging	4.99E-03
82	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	4.99E-03
83	GO:0004034: aldose 1-epimerase activity	4.99E-03
84	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	5.06E-03
85	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	6.48E-03
86	GO:0015174: basic amino acid transmembrane transporter activity	7.28E-03
87	GO:0042802: identical protein binding	8.96E-03
88	GO:0008559: xenobiotic-transporting ATPase activity	8.97E-03
89	GO:0004185: serine-type carboxypeptidase activity	9.80E-03
90	GO:0020037: heme binding	1.06E-02
91	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.08E-02
92	GO:0005315: inorganic phosphate transmembrane transporter activity	1.08E-02
93	GO:0005262: calcium channel activity	1.08E-02
94	GO:0015293: symporter activity	1.10E-02
95	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.18E-02
96	GO:0051287: NAD binding	1.19E-02
97	GO:0005217: intracellular ligand-gated ion channel activity	1.28E-02
98	GO:0004970: ionotropic glutamate receptor activity	1.28E-02
99	GO:0030552: cAMP binding	1.28E-02
100	GO:0030553: cGMP binding	1.28E-02
101	GO:0005506: iron ion binding	1.35E-02
102	GO:0008234: cysteine-type peptidase activity	1.47E-02
103	GO:0005216: ion channel activity	1.59E-02
104	GO:0004176: ATP-dependent peptidase activity	1.70E-02
105	GO:0005249: voltage-gated potassium channel activity	2.29E-02
106	GO:0030551: cyclic nucleotide binding	2.29E-02
107	GO:0004527: exonuclease activity	2.42E-02
108	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.42E-02
109	GO:0019825: oxygen binding	2.50E-02
110	GO:0010181: FMN binding	2.54E-02
111	GO:0016853: isomerase activity	2.54E-02
112	GO:0030170: pyridoxal phosphate binding	2.63E-02
113	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.81E-02
114	GO:0008270: zinc ion binding	2.82E-02
115	GO:0004518: nuclease activity	2.94E-02
116	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.08E-02
117	GO:0015297: antiporter activity	3.12E-02
118	GO:0016791: phosphatase activity	3.22E-02
119	GO:0008237: metallopeptidase activity	3.36E-02
120	GO:0008483: transaminase activity	3.36E-02
121	GO:0016413: O-acetyltransferase activity	3.50E-02
122	GO:0004721: phosphoprotein phosphatase activity	4.10E-02
123	GO:0030247: polysaccharide binding	4.10E-02
124	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.14E-02
125	GO:0015238: drug transmembrane transporter activity	4.56E-02
126	GO:0004222: metalloendopeptidase activity	4.72E-02
127	GO:0005215: transporter activity	4.82E-02
128	GO:0030145: manganese ion binding	4.88E-02
129	GO:0000287: magnesium ion binding	4.93E-02
130	GO:0016787: hydrolase activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0031313: extrinsic component of endosome membrane	0.00E+00
3	GO:0005773: vacuole	5.11E-05
4	GO:0005764: lysosome	5.78E-05
5	GO:0009507: chloroplast	7.44E-05
6	GO:0009501: amyloplast	2.76E-04
7	GO:0031234: extrinsic component of cytoplasmic side of plasma membrane	2.82E-04
8	GO:0043674: columella	2.82E-04
9	GO:0031969: chloroplast membrane	7.50E-04
10	GO:0016328: lateral plasma membrane	1.00E-03
11	GO:0005777: peroxisome	1.41E-03
12	GO:0009532: plastid stroma	1.58E-03
13	GO:0031372: UBC13-MMS2 complex	1.92E-03
14	GO:0016593: Cdc73/Paf1 complex	1.92E-03
15	GO:0009526: plastid envelope	1.92E-03
16	GO:0005746: mitochondrial respiratory chain	2.46E-03
17	GO:0005747: mitochondrial respiratory chain complex I	2.71E-03
18	GO:0031463: Cul3-RING ubiquitin ligase complex	3.03E-03
19	GO:0009706: chloroplast inner membrane	3.29E-03
20	GO:0009840: chloroplastic endopeptidase Clp complex	3.65E-03
21	GO:0005623: cell	4.53E-03
22	GO:0031982: vesicle	4.99E-03
23	GO:0005779: integral component of peroxisomal membrane	5.72E-03
24	GO:0009570: chloroplast stroma	5.91E-03
25	GO:0009941: chloroplast envelope	6.09E-03
26	GO:0009536: plastid	6.47E-03
27	GO:0016021: integral component of membrane	8.13E-03
28	GO:0005884: actin filament	8.97E-03
29	GO:0005750: mitochondrial respiratory chain complex III	1.18E-02
30	GO:0005758: mitochondrial intermembrane space	1.48E-02
31	GO:0071944: cell periphery	3.08E-02
32	GO:0005778: peroxisomal membrane	3.36E-02
33	GO:0010319: stromule	3.36E-02
34	GO:0005887: integral component of plasma membrane	3.62E-02
35	GO:0005615: extracellular space	3.65E-02
36	GO:0005774: vacuolar membrane	4.61E-02
37	GO:0000325: plant-type vacuole	4.88E-02