co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G41000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032780: negative regulation of ATPase activity	0.00E+00
2	GO:1900088: regulation of inositol biosynthetic process	0.00E+00
3	GO:1900091: regulation of raffinose biosynthetic process	0.00E+00
4	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
5	GO:0009661: chromoplast organization	0.00E+00
6	GO:0006555: methionine metabolic process	1.83E-05
7	GO:0019509: L-methionine salvage from methylthioadenosine	2.61E-05
8	GO:0006285: base-excision repair, AP site formation	8.78E-05
9	GO:0032956: regulation of actin cytoskeleton organization	8.78E-05
10	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	8.78E-05
11	GO:2000030: regulation of response to red or far red light	2.08E-04
12	GO:0048571: long-day photoperiodism	2.08E-04
13	GO:1904143: positive regulation of carotenoid biosynthetic process	2.08E-04
14	GO:0080183: response to photooxidative stress	2.08E-04
15	GO:0043100: pyrimidine nucleobase salvage	2.08E-04
16	GO:0019419: sulfate reduction	3.48E-04
17	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	3.48E-04
18	GO:1901562: response to paraquat	3.48E-04
19	GO:0031929: TOR signaling	3.48E-04
20	GO:0016570: histone modification	3.48E-04
21	GO:0050482: arachidonic acid secretion	5.01E-04
22	GO:0009902: chloroplast relocation	6.66E-04
23	GO:0010021: amylopectin biosynthetic process	6.66E-04
24	GO:0006646: phosphatidylethanolamine biosynthetic process	6.66E-04
25	GO:0070534: protein K63-linked ubiquitination	6.66E-04
26	GO:0016120: carotene biosynthetic process	8.44E-04
27	GO:0010236: plastoquinone biosynthetic process	8.44E-04
28	GO:0034314: Arp2/3 complex-mediated actin nucleation	1.03E-03
29	GO:0010190: cytochrome b6f complex assembly	1.03E-03
30	GO:0006301: postreplication repair	1.03E-03
31	GO:1901001: negative regulation of response to salt stress	1.23E-03
32	GO:0010189: vitamin E biosynthetic process	1.23E-03
33	GO:0050790: regulation of catalytic activity	1.44E-03
34	GO:0006368: transcription elongation from RNA polymerase II promoter	1.44E-03
35	GO:0055114: oxidation-reduction process	1.58E-03
36	GO:0006644: phospholipid metabolic process	1.66E-03
37	GO:0030091: protein repair	1.66E-03
38	GO:0050821: protein stabilization	1.66E-03
39	GO:0009231: riboflavin biosynthetic process	1.66E-03
40	GO:0006102: isocitrate metabolic process	1.66E-03
41	GO:0015996: chlorophyll catabolic process	1.89E-03
42	GO:0009835: fruit ripening	2.14E-03
43	GO:0045454: cell redox homeostasis	2.39E-03
44	GO:0000103: sulfate assimilation	2.65E-03
45	GO:0006879: cellular iron ion homeostasis	2.93E-03
46	GO:0000272: polysaccharide catabolic process	2.93E-03
47	GO:0007015: actin filament organization	3.80E-03
48	GO:0019344: cysteine biosynthetic process	4.74E-03
49	GO:0051017: actin filament bundle assembly	4.74E-03
50	GO:0008299: isoprenoid biosynthetic process	5.07E-03
51	GO:0006366: transcription from RNA polymerase II promoter	5.42E-03
52	GO:0006508: proteolysis	5.57E-03
53	GO:0016226: iron-sulfur cluster assembly	5.76E-03
54	GO:0040007: growth	6.12E-03
55	GO:0006284: base-excision repair	6.48E-03
56	GO:0042335: cuticle development	7.24E-03
57	GO:0006662: glycerol ether metabolic process	7.62E-03
58	GO:0019252: starch biosynthetic process	8.42E-03
59	GO:0008654: phospholipid biosynthetic process	8.42E-03
60	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	8.83E-03
61	GO:0030163: protein catabolic process	9.67E-03
62	GO:0009658: chloroplast organization	9.83E-03
63	GO:0006464: cellular protein modification process	1.01E-02
64	GO:0016126: sterol biosynthetic process	1.14E-02
65	GO:0018298: protein-chromophore linkage	1.38E-02
66	GO:0006811: ion transport	1.48E-02
67	GO:0034599: cellular response to oxidative stress	1.68E-02
68	GO:0006099: tricarboxylic acid cycle	1.68E-02
69	GO:0042546: cell wall biogenesis	2.01E-02
70	GO:0006855: drug transmembrane transport	2.18E-02
71	GO:0042538: hyperosmotic salinity response	2.29E-02
72	GO:0051603: proteolysis involved in cellular protein catabolic process	2.47E-02
73	GO:0055085: transmembrane transport	4.06E-02
74	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.95E-02
75	GO:0009739: response to gibberellin	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
2	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
3	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
4	GO:0042030: ATPase inhibitor activity	0.00E+00
5	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
6	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.58E-06
7	GO:0008106: alcohol dehydrogenase (NADP+) activity	3.77E-06
8	GO:0016776: phosphotransferase activity, phosphate group as acceptor	8.78E-05
9	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	8.78E-05
10	GO:0016780: phosphotransferase activity, for other substituted phosphate groups	8.78E-05
11	GO:0004307: ethanolaminephosphotransferase activity	8.78E-05
12	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	8.78E-05
13	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	8.78E-05
14	GO:0033201: alpha-1,4-glucan synthase activity	2.08E-04
15	GO:0050347: trans-octaprenyltranstransferase activity	2.08E-04
16	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	2.08E-04
17	GO:0030572: phosphatidyltransferase activity	2.08E-04
18	GO:0004142: diacylglycerol cholinephosphotransferase activity	2.08E-04
19	GO:0009973: adenylyl-sulfate reductase activity	2.08E-04
20	GO:1990269: RNA polymerase II C-terminal domain phosphoserine binding	2.08E-04
21	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	2.08E-04
22	GO:0004450: isocitrate dehydrogenase (NADP+) activity	2.08E-04
23	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	2.08E-04
24	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	2.08E-04
25	GO:0016491: oxidoreductase activity	2.77E-04
26	GO:0004180: carboxypeptidase activity	3.48E-04
27	GO:0004373: glycogen (starch) synthase activity	3.48E-04
28	GO:0003913: DNA photolyase activity	3.48E-04
29	GO:0004557: alpha-galactosidase activity	3.48E-04
30	GO:0003935: GTP cyclohydrolase II activity	3.48E-04
31	GO:0001076: transcription factor activity, RNA polymerase II transcription factor binding	3.48E-04
32	GO:0000254: C-4 methylsterol oxidase activity	5.01E-04
33	GO:0019104: DNA N-glycosylase activity	6.66E-04
34	GO:0009011: starch synthase activity	6.66E-04
35	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	7.47E-04
36	GO:0004623: phospholipase A2 activity	8.44E-04
37	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	1.03E-03
38	GO:0016161: beta-amylase activity	1.23E-03
39	GO:0009881: photoreceptor activity	1.44E-03
40	GO:0015035: protein disulfide oxidoreductase activity	3.80E-03
41	GO:0001046: core promoter sequence-specific DNA binding	4.74E-03
42	GO:0022891: substrate-specific transmembrane transporter activity	6.12E-03
43	GO:0047134: protein-disulfide reductase activity	6.86E-03
44	GO:0010181: FMN binding	8.02E-03
45	GO:0004791: thioredoxin-disulfide reductase activity	8.02E-03
46	GO:0004197: cysteine-type endopeptidase activity	9.24E-03
47	GO:0051015: actin filament binding	9.67E-03
48	GO:0008233: peptidase activity	1.20E-02
49	GO:0005525: GTP binding	1.21E-02
50	GO:0061630: ubiquitin protein ligase activity	1.28E-02
51	GO:0008236: serine-type peptidase activity	1.33E-02
52	GO:0015238: drug transmembrane transporter activity	1.43E-02
53	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.53E-02
54	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.63E-02
55	GO:0005215: transporter activity	1.79E-02
56	GO:0003924: GTPase activity	1.81E-02
57	GO:0051287: NAD binding	2.24E-02
58	GO:0016298: lipase activity	2.47E-02
59	GO:0004672: protein kinase activity	2.56E-02
60	GO:0031625: ubiquitin protein ligase binding	2.60E-02
61	GO:0008234: cysteine-type peptidase activity	2.60E-02
62	GO:0000166: nucleotide binding	3.21E-02
63	GO:0004252: serine-type endopeptidase activity	3.92E-02
64	GO:0015144: carbohydrate transmembrane transporter activity	4.14E-02
65	GO:0015297: antiporter activity	4.43E-02
66	GO:0005351: sugar:proton symporter activity	4.50E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.26E-05
2	GO:0031932: TORC2 complex	8.78E-05
3	GO:0031931: TORC1 complex	3.48E-04
4	GO:0031372: UBC13-MMS2 complex	6.66E-04
5	GO:0016593: Cdc73/Paf1 complex	6.66E-04
6	GO:0009526: plastid envelope	6.66E-04
7	GO:0009840: chloroplastic endopeptidase Clp complex	1.23E-03
8	GO:0005885: Arp2/3 protein complex	1.23E-03
9	GO:0009501: amyloplast	1.66E-03
10	GO:0042644: chloroplast nucleoid	2.14E-03
11	GO:0005884: actin filament	2.93E-03
12	GO:0005764: lysosome	3.80E-03
13	GO:0009532: plastid stroma	5.42E-03
14	GO:0009570: chloroplast stroma	6.77E-03
15	GO:0031969: chloroplast membrane	1.22E-02
16	GO:0031977: thylakoid lumen	1.84E-02
17	GO:0009536: plastid	2.04E-02
18	GO:0005747: mitochondrial respiratory chain complex I	2.78E-02
19	GO:0016607: nuclear speck	2.78E-02
20	GO:0009706: chloroplast inner membrane	3.10E-02
21	GO:0010287: plastoglobule	3.50E-02
22	GO:0009534: chloroplast thylakoid	3.87E-02
23	GO:0005773: vacuole	4.34E-02
24	GO:0005615: extracellular space	4.95E-02