GO Enrichment Analysis of Co-expressed Genes with
AT2G40760
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006114: glycerol biosynthetic process | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 4 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 5 | GO:0015979: photosynthesis | 6.01E-07 |
| 6 | GO:0010027: thylakoid membrane organization | 1.16E-04 |
| 7 | GO:0000476: maturation of 4.5S rRNA | 1.23E-04 |
| 8 | GO:0000967: rRNA 5'-end processing | 1.23E-04 |
| 9 | GO:0000481: maturation of 5S rRNA | 1.23E-04 |
| 10 | GO:0065002: intracellular protein transmembrane transport | 1.23E-04 |
| 11 | GO:0043686: co-translational protein modification | 1.23E-04 |
| 12 | GO:0046167: glycerol-3-phosphate biosynthetic process | 1.23E-04 |
| 13 | GO:0043007: maintenance of rDNA | 1.23E-04 |
| 14 | GO:0034337: RNA folding | 1.23E-04 |
| 15 | GO:0006419: alanyl-tRNA aminoacylation | 1.23E-04 |
| 16 | GO:0010493: Lewis a epitope biosynthetic process | 1.23E-04 |
| 17 | GO:0043953: protein transport by the Tat complex | 1.23E-04 |
| 18 | GO:0006650: glycerophospholipid metabolic process | 2.86E-04 |
| 19 | GO:0006432: phenylalanyl-tRNA aminoacylation | 2.86E-04 |
| 20 | GO:0018026: peptidyl-lysine monomethylation | 2.86E-04 |
| 21 | GO:0034470: ncRNA processing | 2.86E-04 |
| 22 | GO:0005977: glycogen metabolic process | 4.72E-04 |
| 23 | GO:0046168: glycerol-3-phosphate catabolic process | 4.72E-04 |
| 24 | GO:0061077: chaperone-mediated protein folding | 5.17E-04 |
| 25 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 6.76E-04 |
| 26 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 6.76E-04 |
| 27 | GO:2001141: regulation of RNA biosynthetic process | 6.76E-04 |
| 28 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 6.76E-04 |
| 29 | GO:0006020: inositol metabolic process | 6.76E-04 |
| 30 | GO:0006072: glycerol-3-phosphate metabolic process | 6.76E-04 |
| 31 | GO:0006021: inositol biosynthetic process | 8.97E-04 |
| 32 | GO:0010021: amylopectin biosynthetic process | 8.97E-04 |
| 33 | GO:0015994: chlorophyll metabolic process | 8.97E-04 |
| 34 | GO:0006564: L-serine biosynthetic process | 1.13E-03 |
| 35 | GO:0031365: N-terminal protein amino acid modification | 1.13E-03 |
| 36 | GO:0046855: inositol phosphate dephosphorylation | 1.39E-03 |
| 37 | GO:0042793: transcription from plastid promoter | 1.39E-03 |
| 38 | GO:0042549: photosystem II stabilization | 1.39E-03 |
| 39 | GO:1901259: chloroplast rRNA processing | 1.66E-03 |
| 40 | GO:0015995: chlorophyll biosynthetic process | 1.70E-03 |
| 41 | GO:0016311: dephosphorylation | 1.79E-03 |
| 42 | GO:0018298: protein-chromophore linkage | 1.89E-03 |
| 43 | GO:0006400: tRNA modification | 1.95E-03 |
| 44 | GO:0030091: protein repair | 2.26E-03 |
| 45 | GO:0032508: DNA duplex unwinding | 2.26E-03 |
| 46 | GO:0000105: histidine biosynthetic process | 2.26E-03 |
| 47 | GO:0009231: riboflavin biosynthetic process | 2.26E-03 |
| 48 | GO:0016559: peroxisome fission | 2.26E-03 |
| 49 | GO:0009637: response to blue light | 2.38E-03 |
| 50 | GO:0032544: plastid translation | 2.58E-03 |
| 51 | GO:0017004: cytochrome complex assembly | 2.58E-03 |
| 52 | GO:0071482: cellular response to light stimulus | 2.58E-03 |
| 53 | GO:0009658: chloroplast organization | 2.60E-03 |
| 54 | GO:0010114: response to red light | 3.06E-03 |
| 55 | GO:0005982: starch metabolic process | 3.26E-03 |
| 56 | GO:0010205: photoinhibition | 3.26E-03 |
| 57 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.26E-03 |
| 58 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.62E-03 |
| 59 | GO:0019684: photosynthesis, light reaction | 4.00E-03 |
| 60 | GO:0009089: lysine biosynthetic process via diaminopimelate | 4.00E-03 |
| 61 | GO:0006352: DNA-templated transcription, initiation | 4.00E-03 |
| 62 | GO:0006913: nucleocytoplasmic transport | 4.00E-03 |
| 63 | GO:0009773: photosynthetic electron transport in photosystem I | 4.00E-03 |
| 64 | GO:0006364: rRNA processing | 4.11E-03 |
| 65 | GO:0006790: sulfur compound metabolic process | 4.39E-03 |
| 66 | GO:0005983: starch catabolic process | 4.39E-03 |
| 67 | GO:0006094: gluconeogenesis | 4.79E-03 |
| 68 | GO:0006096: glycolytic process | 4.85E-03 |
| 69 | GO:0010020: chloroplast fission | 5.20E-03 |
| 70 | GO:0019853: L-ascorbic acid biosynthetic process | 5.63E-03 |
| 71 | GO:0010030: positive regulation of seed germination | 5.63E-03 |
| 72 | GO:0046854: phosphatidylinositol phosphorylation | 5.63E-03 |
| 73 | GO:0000162: tryptophan biosynthetic process | 6.06E-03 |
| 74 | GO:0009768: photosynthesis, light harvesting in photosystem I | 6.98E-03 |
| 75 | GO:0019953: sexual reproduction | 6.98E-03 |
| 76 | GO:0019915: lipid storage | 7.45E-03 |
| 77 | GO:0009793: embryo development ending in seed dormancy | 7.67E-03 |
| 78 | GO:0071369: cellular response to ethylene stimulus | 8.43E-03 |
| 79 | GO:0006012: galactose metabolic process | 8.43E-03 |
| 80 | GO:0009790: embryo development | 8.52E-03 |
| 81 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 9.45E-03 |
| 82 | GO:0042631: cellular response to water deprivation | 9.99E-03 |
| 83 | GO:0009451: RNA modification | 1.03E-02 |
| 84 | GO:0048868: pollen tube development | 1.05E-02 |
| 85 | GO:0019252: starch biosynthetic process | 1.16E-02 |
| 86 | GO:0008654: phospholipid biosynthetic process | 1.16E-02 |
| 87 | GO:0071554: cell wall organization or biogenesis | 1.22E-02 |
| 88 | GO:0006810: transport | 1.30E-02 |
| 89 | GO:0009567: double fertilization forming a zygote and endosperm | 1.40E-02 |
| 90 | GO:0009911: positive regulation of flower development | 1.58E-02 |
| 91 | GO:0042254: ribosome biogenesis | 1.59E-02 |
| 92 | GO:0009817: defense response to fungus, incompatible interaction | 1.91E-02 |
| 93 | GO:0009813: flavonoid biosynthetic process | 1.98E-02 |
| 94 | GO:0006499: N-terminal protein myristoylation | 2.05E-02 |
| 95 | GO:0010218: response to far red light | 2.05E-02 |
| 96 | GO:0009867: jasmonic acid mediated signaling pathway | 2.26E-02 |
| 97 | GO:0045454: cell redox homeostasis | 2.33E-02 |
| 98 | GO:0006631: fatty acid metabolic process | 2.56E-02 |
| 99 | GO:0032259: methylation | 2.75E-02 |
| 100 | GO:0006281: DNA repair | 2.87E-02 |
| 101 | GO:0006412: translation | 3.07E-02 |
| 102 | GO:0006486: protein glycosylation | 3.35E-02 |
| 103 | GO:0009553: embryo sac development | 4.22E-02 |
| 104 | GO:0009735: response to cytokinin | 4.63E-02 |
| 105 | GO:0005975: carbohydrate metabolic process | 4.72E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity | 0.00E+00 |
| 2 | GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity | 0.00E+00 |
| 3 | GO:0043136: glycerol-3-phosphatase activity | 0.00E+00 |
| 4 | GO:0000121: glycerol-1-phosphatase activity | 0.00E+00 |
| 5 | GO:0010349: L-galactose dehydrogenase activity | 0.00E+00 |
| 6 | GO:0019843: rRNA binding | 1.18E-04 |
| 7 | GO:0042586: peptide deformylase activity | 1.23E-04 |
| 8 | GO:0019203: carbohydrate phosphatase activity | 1.23E-04 |
| 9 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.23E-04 |
| 10 | GO:0004347: glucose-6-phosphate isomerase activity | 1.23E-04 |
| 11 | GO:0046920: alpha-(1->3)-fucosyltransferase activity | 1.23E-04 |
| 12 | GO:0050308: sugar-phosphatase activity | 1.23E-04 |
| 13 | GO:0004813: alanine-tRNA ligase activity | 1.23E-04 |
| 14 | GO:0000049: tRNA binding | 2.37E-04 |
| 15 | GO:0019156: isoamylase activity | 2.86E-04 |
| 16 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 2.86E-04 |
| 17 | GO:0047746: chlorophyllase activity | 2.86E-04 |
| 18 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 2.86E-04 |
| 19 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.86E-04 |
| 20 | GO:0052832: inositol monophosphate 3-phosphatase activity | 2.86E-04 |
| 21 | GO:0008934: inositol monophosphate 1-phosphatase activity | 2.86E-04 |
| 22 | GO:0052833: inositol monophosphate 4-phosphatase activity | 2.86E-04 |
| 23 | GO:0004826: phenylalanine-tRNA ligase activity | 2.86E-04 |
| 24 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.07E-04 |
| 25 | GO:0005528: FK506 binding | 4.26E-04 |
| 26 | GO:0005504: fatty acid binding | 4.72E-04 |
| 27 | GO:0004751: ribose-5-phosphate isomerase activity | 4.72E-04 |
| 28 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 4.72E-04 |
| 29 | GO:0003913: DNA photolyase activity | 4.72E-04 |
| 30 | GO:0016851: magnesium chelatase activity | 6.76E-04 |
| 31 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 6.76E-04 |
| 32 | GO:0045430: chalcone isomerase activity | 8.97E-04 |
| 33 | GO:0016279: protein-lysine N-methyltransferase activity | 8.97E-04 |
| 34 | GO:0001053: plastid sigma factor activity | 8.97E-04 |
| 35 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 8.97E-04 |
| 36 | GO:0080032: methyl jasmonate esterase activity | 8.97E-04 |
| 37 | GO:0016987: sigma factor activity | 8.97E-04 |
| 38 | GO:0016597: amino acid binding | 1.37E-03 |
| 39 | GO:0042578: phosphoric ester hydrolase activity | 1.39E-03 |
| 40 | GO:0004556: alpha-amylase activity | 1.39E-03 |
| 41 | GO:2001070: starch binding | 1.39E-03 |
| 42 | GO:0080030: methyl indole-3-acetate esterase activity | 1.39E-03 |
| 43 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 1.66E-03 |
| 44 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.66E-03 |
| 45 | GO:0009881: photoreceptor activity | 1.95E-03 |
| 46 | GO:0004033: aldo-keto reductase (NADP) activity | 2.26E-03 |
| 47 | GO:0043022: ribosome binding | 2.26E-03 |
| 48 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 2.91E-03 |
| 49 | GO:0008417: fucosyltransferase activity | 2.91E-03 |
| 50 | GO:0051287: NAD binding | 3.69E-03 |
| 51 | GO:0031409: pigment binding | 6.06E-03 |
| 52 | GO:0016787: hydrolase activity | 6.71E-03 |
| 53 | GO:0008017: microtubule binding | 1.06E-02 |
| 54 | GO:0048038: quinone binding | 1.22E-02 |
| 55 | GO:0008483: transaminase activity | 1.46E-02 |
| 56 | GO:0008168: methyltransferase activity | 1.51E-02 |
| 57 | GO:0016413: O-acetyltransferase activity | 1.52E-02 |
| 58 | GO:0016788: hydrolase activity, acting on ester bonds | 1.59E-02 |
| 59 | GO:0016168: chlorophyll binding | 1.65E-02 |
| 60 | GO:0003735: structural constituent of ribosome | 2.04E-02 |
| 61 | GO:0030145: manganese ion binding | 2.12E-02 |
| 62 | GO:0003723: RNA binding | 2.33E-02 |
| 63 | GO:0003993: acid phosphatase activity | 2.34E-02 |
| 64 | GO:0003924: GTPase activity | 2.87E-02 |
| 65 | GO:0009055: electron carrier activity | 3.08E-02 |
| 66 | GO:0004519: endonuclease activity | 3.12E-02 |
| 67 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.35E-02 |
| 68 | GO:0045735: nutrient reservoir activity | 3.78E-02 |
| 69 | GO:0008289: lipid binding | 3.98E-02 |
| 70 | GO:0015035: protein disulfide oxidoreductase activity | 4.40E-02 |
| 71 | GO:0008026: ATP-dependent helicase activity | 4.49E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 2 | GO:0009349: riboflavin synthase complex | 0.00E+00 |
| 3 | GO:0043235: receptor complex | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 2.29E-39 |
| 5 | GO:0009570: chloroplast stroma | 1.19E-17 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 6.04E-15 |
| 7 | GO:0009534: chloroplast thylakoid | 2.25E-11 |
| 8 | GO:0009941: chloroplast envelope | 3.10E-11 |
| 9 | GO:0009579: thylakoid | 1.14E-07 |
| 10 | GO:0009538: photosystem I reaction center | 8.75E-07 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 7.99E-06 |
| 12 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.22E-04 |
| 13 | GO:0031361: integral component of thylakoid membrane | 1.23E-04 |
| 14 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.86E-04 |
| 15 | GO:0031977: thylakoid lumen | 2.99E-04 |
| 16 | GO:0030095: chloroplast photosystem II | 3.07E-04 |
| 17 | GO:0005840: ribosome | 4.58E-04 |
| 18 | GO:0033281: TAT protein transport complex | 4.72E-04 |
| 19 | GO:0010007: magnesium chelatase complex | 4.72E-04 |
| 20 | GO:0009331: glycerol-3-phosphate dehydrogenase complex | 6.76E-04 |
| 21 | GO:0042646: plastid nucleoid | 6.76E-04 |
| 22 | GO:0010287: plastoglobule | 9.41E-04 |
| 23 | GO:0009533: chloroplast stromal thylakoid | 1.95E-03 |
| 24 | GO:0042644: chloroplast nucleoid | 2.91E-03 |
| 25 | GO:0055028: cortical microtubule | 3.62E-03 |
| 26 | GO:0012511: monolayer-surrounded lipid storage body | 4.00E-03 |
| 27 | GO:0032040: small-subunit processome | 4.39E-03 |
| 28 | GO:0009508: plastid chromosome | 4.79E-03 |
| 29 | GO:0030076: light-harvesting complex | 5.63E-03 |
| 30 | GO:0009654: photosystem II oxygen evolving complex | 6.98E-03 |
| 31 | GO:0009536: plastid | 9.88E-03 |
| 32 | GO:0009522: photosystem I | 1.11E-02 |
| 33 | GO:0009523: photosystem II | 1.16E-02 |
| 34 | GO:0019898: extrinsic component of membrane | 1.16E-02 |
| 35 | GO:0032580: Golgi cisterna membrane | 1.40E-02 |
| 36 | GO:0009295: nucleoid | 1.46E-02 |
| 37 | GO:0005874: microtubule | 1.88E-02 |
| 38 | GO:0009707: chloroplast outer membrane | 1.91E-02 |
| 39 | GO:0015934: large ribosomal subunit | 2.12E-02 |
| 40 | GO:0009706: chloroplast inner membrane | 4.31E-02 |
| 41 | GO:0022626: cytosolic ribosome | 4.84E-02 |