GO Enrichment Analysis of Co-expressed Genes with
AT2G40700
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 3 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 4 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 5 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 6 | GO:0006364: rRNA processing | 3.02E-16 |
| 7 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.31E-07 |
| 8 | GO:0009553: embryo sac development | 8.05E-07 |
| 9 | GO:0010162: seed dormancy process | 1.11E-06 |
| 10 | GO:0042273: ribosomal large subunit biogenesis | 5.79E-06 |
| 11 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.12E-05 |
| 12 | GO:0031120: snRNA pseudouridine synthesis | 7.75E-05 |
| 13 | GO:0000469: cleavage involved in rRNA processing | 7.75E-05 |
| 14 | GO:0031118: rRNA pseudouridine synthesis | 7.75E-05 |
| 15 | GO:0030490: maturation of SSU-rRNA | 7.75E-05 |
| 16 | GO:0043985: histone H4-R3 methylation | 7.75E-05 |
| 17 | GO:0042254: ribosome biogenesis | 1.53E-04 |
| 18 | GO:0080009: mRNA methylation | 1.85E-04 |
| 19 | GO:0045041: protein import into mitochondrial intermembrane space | 1.85E-04 |
| 20 | GO:0034470: ncRNA processing | 1.85E-04 |
| 21 | GO:0009944: polarity specification of adaxial/abaxial axis | 2.27E-04 |
| 22 | GO:0007005: mitochondrion organization | 3.05E-04 |
| 23 | GO:0016569: covalent chromatin modification | 3.17E-04 |
| 24 | GO:0009294: DNA mediated transformation | 3.33E-04 |
| 25 | GO:0010501: RNA secondary structure unwinding | 4.24E-04 |
| 26 | GO:0007276: gamete generation | 4.49E-04 |
| 27 | GO:0009855: determination of bilateral symmetry | 4.49E-04 |
| 28 | GO:0051131: chaperone-mediated protein complex assembly | 4.49E-04 |
| 29 | GO:0000460: maturation of 5.8S rRNA | 5.98E-04 |
| 30 | GO:0006479: protein methylation | 5.98E-04 |
| 31 | GO:0046345: abscisic acid catabolic process | 5.98E-04 |
| 32 | GO:0010375: stomatal complex patterning | 7.57E-04 |
| 33 | GO:0000470: maturation of LSU-rRNA | 9.24E-04 |
| 34 | GO:0006458: 'de novo' protein folding | 1.10E-03 |
| 35 | GO:0042026: protein refolding | 1.10E-03 |
| 36 | GO:0010374: stomatal complex development | 1.29E-03 |
| 37 | GO:0080186: developmental vegetative growth | 1.29E-03 |
| 38 | GO:0000028: ribosomal small subunit assembly | 1.48E-03 |
| 39 | GO:0030422: production of siRNA involved in RNA interference | 2.37E-03 |
| 40 | GO:0010582: floral meristem determinacy | 2.86E-03 |
| 41 | GO:0006412: translation | 3.07E-03 |
| 42 | GO:0010030: positive regulation of seed germination | 3.66E-03 |
| 43 | GO:0051302: regulation of cell division | 4.52E-03 |
| 44 | GO:0061077: chaperone-mediated protein folding | 4.82E-03 |
| 45 | GO:0046686: response to cadmium ion | 5.42E-03 |
| 46 | GO:0009451: RNA modification | 5.49E-03 |
| 47 | GO:0009561: megagametogenesis | 5.77E-03 |
| 48 | GO:0000413: protein peptidyl-prolyl isomerization | 6.44E-03 |
| 49 | GO:0010197: polar nucleus fusion | 6.78E-03 |
| 50 | GO:0009960: endosperm development | 6.78E-03 |
| 51 | GO:0006457: protein folding | 7.20E-03 |
| 52 | GO:0006414: translational elongation | 8.62E-03 |
| 53 | GO:0016049: cell growth | 1.18E-02 |
| 54 | GO:0045892: negative regulation of transcription, DNA-templated | 1.25E-02 |
| 55 | GO:0048527: lateral root development | 1.36E-02 |
| 56 | GO:0000154: rRNA modification | 1.88E-02 |
| 57 | GO:0006417: regulation of translation | 2.30E-02 |
| 58 | GO:0009555: pollen development | 2.71E-02 |
| 59 | GO:0006396: RNA processing | 2.81E-02 |
| 60 | GO:0009790: embryo development | 3.61E-02 |
| 61 | GO:0009793: embryo development ending in seed dormancy | 3.64E-02 |
| 62 | GO:0007166: cell surface receptor signaling pathway | 4.47E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 2 | GO:0000166: nucleotide binding | 4.74E-12 |
| 3 | GO:0003723: RNA binding | 9.64E-11 |
| 4 | GO:0004407: histone deacetylase activity | 5.82E-08 |
| 5 | GO:0030515: snoRNA binding | 1.81E-07 |
| 6 | GO:0043021: ribonucleoprotein complex binding | 3.31E-07 |
| 7 | GO:0008026: ATP-dependent helicase activity | 2.64E-05 |
| 8 | GO:0042134: rRNA primary transcript binding | 7.75E-05 |
| 9 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 7.75E-05 |
| 10 | GO:0003746: translation elongation factor activity | 9.75E-05 |
| 11 | GO:0044183: protein binding involved in protein folding | 1.04E-04 |
| 12 | GO:0070181: small ribosomal subunit rRNA binding | 3.11E-04 |
| 13 | GO:0003735: structural constituent of ribosome | 4.58E-04 |
| 14 | GO:0004004: ATP-dependent RNA helicase activity | 9.33E-04 |
| 15 | GO:0008173: RNA methyltransferase activity | 1.69E-03 |
| 16 | GO:0001055: RNA polymerase II activity | 2.14E-03 |
| 17 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.21E-03 |
| 18 | GO:0001054: RNA polymerase I activity | 2.61E-03 |
| 19 | GO:0004521: endoribonuclease activity | 2.86E-03 |
| 20 | GO:0001056: RNA polymerase III activity | 2.86E-03 |
| 21 | GO:0000049: tRNA binding | 2.86E-03 |
| 22 | GO:0051082: unfolded protein binding | 3.12E-03 |
| 23 | GO:0009982: pseudouridine synthase activity | 3.12E-03 |
| 24 | GO:0008168: methyltransferase activity | 7.99E-03 |
| 25 | GO:0016787: hydrolase activity | 8.77E-03 |
| 26 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.18E-02 |
| 27 | GO:0050897: cobalt ion binding | 1.36E-02 |
| 28 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.49E-02 |
| 29 | GO:0003924: GTPase activity | 1.52E-02 |
| 30 | GO:0004519: endonuclease activity | 1.66E-02 |
| 31 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.93E-02 |
| 32 | GO:0003676: nucleic acid binding | 2.34E-02 |
| 33 | GO:0019843: rRNA binding | 3.23E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0034455: t-UTP complex | 0.00E+00 |
| 3 | GO:0036396: MIS complex | 0.00E+00 |
| 4 | GO:0005730: nucleolus | 9.54E-33 |
| 5 | GO:0032040: small-subunit processome | 7.53E-11 |
| 6 | GO:0005634: nucleus | 1.31E-09 |
| 7 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.54E-08 |
| 8 | GO:0030687: preribosome, large subunit precursor | 1.81E-07 |
| 9 | GO:0070545: PeBoW complex | 3.31E-07 |
| 10 | GO:0005834: heterotrimeric G-protein complex | 1.84E-05 |
| 11 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 7.75E-05 |
| 12 | GO:0030688: preribosome, small subunit precursor | 7.75E-05 |
| 13 | GO:0031429: box H/ACA snoRNP complex | 4.49E-04 |
| 14 | GO:0005759: mitochondrial matrix | 6.11E-04 |
| 15 | GO:0031428: box C/D snoRNP complex | 9.24E-04 |
| 16 | GO:0022627: cytosolic small ribosomal subunit | 9.73E-04 |
| 17 | GO:0016363: nuclear matrix | 1.10E-03 |
| 18 | GO:0034399: nuclear periphery | 1.48E-03 |
| 19 | GO:0022625: cytosolic large ribosomal subunit | 1.64E-03 |
| 20 | GO:0005618: cell wall | 1.79E-03 |
| 21 | GO:0005736: DNA-directed RNA polymerase I complex | 1.91E-03 |
| 22 | GO:0005666: DNA-directed RNA polymerase III complex | 2.14E-03 |
| 23 | GO:0015030: Cajal body | 2.14E-03 |
| 24 | GO:0000418: DNA-directed RNA polymerase IV complex | 2.37E-03 |
| 25 | GO:0005665: DNA-directed RNA polymerase II, core complex | 2.86E-03 |
| 26 | GO:0005840: ribosome | 2.97E-03 |
| 27 | GO:0019013: viral nucleocapsid | 3.12E-03 |
| 28 | GO:0005654: nucleoplasm | 3.80E-03 |
| 29 | GO:0000419: DNA-directed RNA polymerase V complex | 3.94E-03 |
| 30 | GO:0030529: intracellular ribonucleoprotein complex | 1.02E-02 |
| 31 | GO:0015934: large ribosomal subunit | 1.36E-02 |
| 32 | GO:0005829: cytosol | 1.45E-02 |
| 33 | GO:0005774: vacuolar membrane | 1.81E-02 |
| 34 | GO:0009506: plasmodesma | 1.88E-02 |
| 35 | GO:0005747: mitochondrial respiratory chain complex I | 2.47E-02 |
| 36 | GO:0016607: nuclear speck | 2.47E-02 |
| 37 | GO:0022626: cytosolic ribosome | 2.59E-02 |
| 38 | GO:0005732: small nucleolar ribonucleoprotein complex | 2.93E-02 |