GO Enrichment Analysis of Co-expressed Genes with
AT2G40400
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) | 0.00E+00 |
| 2 | GO:0009661: chromoplast organization | 0.00E+00 |
| 3 | GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene | 0.00E+00 |
| 4 | GO:0016120: carotene biosynthetic process | 4.94E-06 |
| 5 | GO:1903409: reactive oxygen species biosynthetic process | 5.18E-05 |
| 6 | GO:0071461: cellular response to redox state | 5.18E-05 |
| 7 | GO:0000305: response to oxygen radical | 5.18E-05 |
| 8 | GO:0045454: cell redox homeostasis | 1.16E-04 |
| 9 | GO:0080005: photosystem stoichiometry adjustment | 1.27E-04 |
| 10 | GO:1904143: positive regulation of carotenoid biosynthetic process | 1.27E-04 |
| 11 | GO:0080183: response to photooxidative stress | 1.27E-04 |
| 12 | GO:0043100: pyrimidine nucleobase salvage | 1.27E-04 |
| 13 | GO:0042754: negative regulation of circadian rhythm | 1.27E-04 |
| 14 | GO:0006898: receptor-mediated endocytosis | 1.27E-04 |
| 15 | GO:0055114: oxidation-reduction process | 1.58E-04 |
| 16 | GO:0071230: cellular response to amino acid stimulus | 2.17E-04 |
| 17 | GO:1901562: response to paraquat | 2.17E-04 |
| 18 | GO:0016570: histone modification | 2.17E-04 |
| 19 | GO:0019419: sulfate reduction | 2.17E-04 |
| 20 | GO:2001141: regulation of RNA biosynthetic process | 3.17E-04 |
| 21 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 3.17E-04 |
| 22 | GO:0071483: cellular response to blue light | 4.24E-04 |
| 23 | GO:0009902: chloroplast relocation | 4.24E-04 |
| 24 | GO:0010021: amylopectin biosynthetic process | 4.24E-04 |
| 25 | GO:0010600: regulation of auxin biosynthetic process | 4.24E-04 |
| 26 | GO:0006749: glutathione metabolic process | 4.24E-04 |
| 27 | GO:0009904: chloroplast accumulation movement | 5.39E-04 |
| 28 | GO:0010236: plastoquinone biosynthetic process | 5.39E-04 |
| 29 | GO:0010190: cytochrome b6f complex assembly | 6.60E-04 |
| 30 | GO:0009903: chloroplast avoidance movement | 7.87E-04 |
| 31 | GO:0010189: vitamin E biosynthetic process | 7.87E-04 |
| 32 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 9.18E-04 |
| 33 | GO:0006368: transcription elongation from RNA polymerase II promoter | 9.18E-04 |
| 34 | GO:0050821: protein stabilization | 1.06E-03 |
| 35 | GO:0010100: negative regulation of photomorphogenesis | 1.20E-03 |
| 36 | GO:0071482: cellular response to light stimulus | 1.20E-03 |
| 37 | GO:0015996: chlorophyll catabolic process | 1.20E-03 |
| 38 | GO:0048574: long-day photoperiodism, flowering | 1.20E-03 |
| 39 | GO:0009835: fruit ripening | 1.35E-03 |
| 40 | GO:0055062: phosphate ion homeostasis | 1.67E-03 |
| 41 | GO:0000103: sulfate assimilation | 1.67E-03 |
| 42 | GO:0006352: DNA-templated transcription, initiation | 1.84E-03 |
| 43 | GO:0000272: polysaccharide catabolic process | 1.84E-03 |
| 44 | GO:0016485: protein processing | 1.84E-03 |
| 45 | GO:0006816: calcium ion transport | 1.84E-03 |
| 46 | GO:0007015: actin filament organization | 2.38E-03 |
| 47 | GO:0051017: actin filament bundle assembly | 2.96E-03 |
| 48 | GO:0019344: cysteine biosynthetic process | 2.96E-03 |
| 49 | GO:0008299: isoprenoid biosynthetic process | 3.16E-03 |
| 50 | GO:0006874: cellular calcium ion homeostasis | 3.16E-03 |
| 51 | GO:0007623: circadian rhythm | 3.19E-03 |
| 52 | GO:0040007: growth | 3.80E-03 |
| 53 | GO:0016117: carotenoid biosynthetic process | 4.26E-03 |
| 54 | GO:0006662: glycerol ether metabolic process | 4.72E-03 |
| 55 | GO:0010182: sugar mediated signaling pathway | 4.72E-03 |
| 56 | GO:0009658: chloroplast organization | 4.91E-03 |
| 57 | GO:0042752: regulation of circadian rhythm | 4.96E-03 |
| 58 | GO:0019252: starch biosynthetic process | 5.21E-03 |
| 59 | GO:0009851: auxin biosynthetic process | 5.21E-03 |
| 60 | GO:0009630: gravitropism | 5.71E-03 |
| 61 | GO:0009567: double fertilization forming a zygote and endosperm | 6.23E-03 |
| 62 | GO:0042128: nitrate assimilation | 7.59E-03 |
| 63 | GO:0006468: protein phosphorylation | 8.08E-03 |
| 64 | GO:0018298: protein-chromophore linkage | 8.46E-03 |
| 65 | GO:0006811: ion transport | 9.06E-03 |
| 66 | GO:0007568: aging | 9.36E-03 |
| 67 | GO:0006865: amino acid transport | 9.68E-03 |
| 68 | GO:0008152: metabolic process | 9.89E-03 |
| 69 | GO:0045087: innate immune response | 9.99E-03 |
| 70 | GO:0034599: cellular response to oxidative stress | 1.03E-02 |
| 71 | GO:0006855: drug transmembrane transport | 1.33E-02 |
| 72 | GO:0009585: red, far-red light phototransduction | 1.47E-02 |
| 73 | GO:0006813: potassium ion transport | 1.47E-02 |
| 74 | GO:0006857: oligopeptide transport | 1.55E-02 |
| 75 | GO:0035556: intracellular signal transduction | 1.69E-02 |
| 76 | GO:0009624: response to nematode | 1.89E-02 |
| 77 | GO:0042744: hydrogen peroxide catabolic process | 2.44E-02 |
| 78 | GO:0009651: response to salt stress | 2.99E-02 |
| 79 | GO:0009739: response to gibberellin | 3.03E-02 |
| 80 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 3.03E-02 |
| 81 | GO:0010468: regulation of gene expression | 3.17E-02 |
| 82 | GO:0009723: response to ethylene | 4.23E-02 |
| 83 | GO:0080167: response to karrikin | 4.44E-02 |
| 84 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.55E-02 |
| 85 | GO:0015979: photosynthesis | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047504: (-)-menthol dehydrogenase activity | 0.00E+00 |
| 2 | GO:0047501: (+)-neomenthol dehydrogenase activity | 0.00E+00 |
| 3 | GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity | 0.00E+00 |
| 4 | GO:0050342: tocopherol O-methyltransferase activity | 0.00E+00 |
| 5 | GO:0016719: carotene 7,8-desaturase activity | 0.00E+00 |
| 6 | GO:0015205: nucleobase transmembrane transporter activity | 0.00E+00 |
| 7 | GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity | 0.00E+00 |
| 8 | GO:0008106: alcohol dehydrogenase (NADP+) activity | 1.51E-06 |
| 9 | GO:0016783: sulfurtransferase activity | 5.18E-05 |
| 10 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 5.18E-05 |
| 11 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 5.18E-05 |
| 12 | GO:0001530: lipopolysaccharide binding | 5.18E-05 |
| 13 | GO:0008066: glutamate receptor activity | 5.18E-05 |
| 14 | GO:0009973: adenylyl-sulfate reductase activity | 1.27E-04 |
| 15 | GO:1990269: RNA polymerase II C-terminal domain phosphoserine binding | 1.27E-04 |
| 16 | GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity | 1.27E-04 |
| 17 | GO:0004362: glutathione-disulfide reductase activity | 1.27E-04 |
| 18 | GO:0033741: adenylyl-sulfate reductase (glutathione) activity | 1.27E-04 |
| 19 | GO:0033201: alpha-1,4-glucan synthase activity | 1.27E-04 |
| 20 | GO:0015173: aromatic amino acid transmembrane transporter activity | 1.27E-04 |
| 21 | GO:0050347: trans-octaprenyltranstransferase activity | 1.27E-04 |
| 22 | GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity | 1.27E-04 |
| 23 | GO:0001076: transcription factor activity, RNA polymerase II transcription factor binding | 2.17E-04 |
| 24 | GO:0004180: carboxypeptidase activity | 2.17E-04 |
| 25 | GO:0004373: glycogen (starch) synthase activity | 2.17E-04 |
| 26 | GO:0003913: DNA photolyase activity | 2.17E-04 |
| 27 | GO:0004557: alpha-galactosidase activity | 2.17E-04 |
| 28 | GO:0004792: thiosulfate sulfurtransferase activity | 3.17E-04 |
| 29 | GO:0015175: neutral amino acid transmembrane transporter activity | 3.17E-04 |
| 30 | GO:0016491: oxidoreductase activity | 3.63E-04 |
| 31 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 3.82E-04 |
| 32 | GO:0009011: starch synthase activity | 4.24E-04 |
| 33 | GO:0001053: plastid sigma factor activity | 4.24E-04 |
| 34 | GO:0016987: sigma factor activity | 4.24E-04 |
| 35 | GO:0004672: protein kinase activity | 4.43E-04 |
| 36 | GO:0008236: serine-type peptidase activity | 5.94E-04 |
| 37 | GO:0004709: MAP kinase kinase kinase activity | 6.60E-04 |
| 38 | GO:0016161: beta-amylase activity | 7.87E-04 |
| 39 | GO:0009881: photoreceptor activity | 9.18E-04 |
| 40 | GO:0000989: transcription factor activity, transcription factor binding | 1.35E-03 |
| 41 | GO:0019904: protein domain specific binding | 1.84E-03 |
| 42 | GO:0015035: protein disulfide oxidoreductase activity | 1.92E-03 |
| 43 | GO:0005262: calcium channel activity | 2.19E-03 |
| 44 | GO:0004970: ionotropic glutamate receptor activity | 2.56E-03 |
| 45 | GO:0005217: intracellular ligand-gated ion channel activity | 2.56E-03 |
| 46 | GO:0008324: cation transmembrane transporter activity | 3.16E-03 |
| 47 | GO:0047134: protein-disulfide reductase activity | 4.26E-03 |
| 48 | GO:0004527: exonuclease activity | 4.72E-03 |
| 49 | GO:0004791: thioredoxin-disulfide reductase activity | 4.96E-03 |
| 50 | GO:0010181: FMN binding | 4.96E-03 |
| 51 | GO:0016791: phosphatase activity | 6.23E-03 |
| 52 | GO:0004871: signal transducer activity | 7.62E-03 |
| 53 | GO:0004721: phosphoprotein phosphatase activity | 7.88E-03 |
| 54 | GO:0004722: protein serine/threonine phosphatase activity | 7.98E-03 |
| 55 | GO:0015238: drug transmembrane transporter activity | 8.76E-03 |
| 56 | GO:0030145: manganese ion binding | 9.36E-03 |
| 57 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 9.99E-03 |
| 58 | GO:0003993: acid phosphatase activity | 1.03E-02 |
| 59 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 1.06E-02 |
| 60 | GO:0050661: NADP binding | 1.09E-02 |
| 61 | GO:0015293: symporter activity | 1.30E-02 |
| 62 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.47E-02 |
| 63 | GO:0015171: amino acid transmembrane transporter activity | 1.58E-02 |
| 64 | GO:0016787: hydrolase activity | 1.71E-02 |
| 65 | GO:0015297: antiporter activity | 2.70E-02 |
| 66 | GO:0042802: identical protein binding | 3.31E-02 |
| 67 | GO:0005215: transporter activity | 3.58E-02 |
| 68 | GO:0004601: peroxidase activity | 3.81E-02 |
| 69 | GO:0050660: flavin adenine dinucleotide binding | 4.23E-02 |
| 70 | GO:0061630: ubiquitin protein ligase activity | 4.60E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009509: chromoplast | 2.17E-04 |
| 2 | GO:0009526: plastid envelope | 4.24E-04 |
| 3 | GO:0016593: Cdc73/Paf1 complex | 4.24E-04 |
| 4 | GO:0031982: vesicle | 1.06E-03 |
| 5 | GO:0009501: amyloplast | 1.06E-03 |
| 6 | GO:0009507: chloroplast | 1.21E-03 |
| 7 | GO:0005884: actin filament | 1.84E-03 |
| 8 | GO:0009532: plastid stroma | 3.37E-03 |
| 9 | GO:0031969: chloroplast membrane | 6.08E-03 |
| 10 | GO:0031977: thylakoid lumen | 1.13E-02 |
| 11 | GO:0005747: mitochondrial respiratory chain complex I | 1.70E-02 |
| 12 | GO:0005834: heterotrimeric G-protein complex | 1.74E-02 |
| 13 | GO:0005777: peroxisome | 1.83E-02 |
| 14 | GO:0010287: plastoglobule | 2.14E-02 |
| 15 | GO:0005759: mitochondrial matrix | 2.61E-02 |
| 16 | GO:0005615: extracellular space | 3.03E-02 |
| 17 | GO:0009536: plastid | 3.96E-02 |
| 18 | GO:0009505: plant-type cell wall | 4.05E-02 |
| 19 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 4.07E-02 |