co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G40000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0035024: negative regulation of Rho protein signal transduction	0.00E+00
2	GO:0010046: response to mycotoxin	0.00E+00
3	GO:0035264: multicellular organism growth	0.00E+00
4	GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process	0.00E+00
5	GO:0019593: mannitol biosynthetic process	0.00E+00
6	GO:0071289: cellular response to nickel ion	0.00E+00
7	GO:0034775: glutathione transmembrane transport	0.00E+00
8	GO:0010200: response to chitin	6.25E-16
9	GO:0009611: response to wounding	3.69E-08
10	GO:2000280: regulation of root development	5.85E-06
11	GO:0006751: glutathione catabolic process	5.65E-05
12	GO:0035435: phosphate ion transmembrane transport	5.65E-05
13	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.05E-04
14	GO:0009737: response to abscisic acid	1.12E-04
15	GO:2000070: regulation of response to water deprivation	1.35E-04
16	GO:0030974: thiamine pyrophosphate transport	1.75E-04
17	GO:0009865: pollen tube adhesion	1.75E-04
18	GO:0050691: regulation of defense response to virus by host	1.75E-04
19	GO:0006680: glucosylceramide catabolic process	1.75E-04
20	GO:0009609: response to symbiotic bacterium	1.75E-04
21	GO:1902265: abscisic acid homeostasis	1.75E-04
22	GO:0046938: phytochelatin biosynthetic process	1.75E-04
23	GO:0051446: positive regulation of meiotic cell cycle	1.75E-04
24	GO:0051180: vitamin transport	1.75E-04
25	GO:0010029: regulation of seed germination	2.48E-04
26	GO:1901679: nucleotide transmembrane transport	3.96E-04
27	GO:0015709: thiosulfate transport	3.96E-04
28	GO:0071422: succinate transmembrane transport	3.96E-04
29	GO:0031407: oxylipin metabolic process	3.96E-04
30	GO:0010289: homogalacturonan biosynthetic process	3.96E-04
31	GO:2000030: regulation of response to red or far red light	3.96E-04
32	GO:0015893: drug transport	3.96E-04
33	GO:0006839: mitochondrial transport	5.30E-04
34	GO:0090630: activation of GTPase activity	6.47E-04
35	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	6.47E-04
36	GO:0010325: raffinose family oligosaccharide biosynthetic process	6.47E-04
37	GO:0080121: AMP transport	6.47E-04
38	GO:0080168: abscisic acid transport	6.47E-04
39	GO:0042344: indole glucosinolate catabolic process	6.47E-04
40	GO:0009873: ethylene-activated signaling pathway	7.00E-04
41	GO:0031408: oxylipin biosynthetic process	8.23E-04
42	GO:0015729: oxaloacetate transport	9.23E-04
43	GO:0030100: regulation of endocytosis	9.23E-04
44	GO:0015700: arsenite transport	9.23E-04
45	GO:0033014: tetrapyrrole biosynthetic process	9.23E-04
46	GO:0009414: response to water deprivation	1.06E-03
47	GO:0009694: jasmonic acid metabolic process	1.22E-03
48	GO:0009687: abscisic acid metabolic process	1.22E-03
49	GO:0046345: abscisic acid catabolic process	1.22E-03
50	GO:0045727: positive regulation of translation	1.22E-03
51	GO:0006536: glutamate metabolic process	1.22E-03
52	GO:0015867: ATP transport	1.22E-03
53	GO:0009651: response to salt stress	1.33E-03
54	GO:0006355: regulation of transcription, DNA-templated	1.52E-03
55	GO:0010117: photoprotection	1.56E-03
56	GO:0071423: malate transmembrane transport	1.56E-03
57	GO:0010193: response to ozone	1.63E-03
58	GO:0045892: negative regulation of transcription, DNA-templated	1.63E-03
59	GO:0015866: ADP transport	1.91E-03
60	GO:0047484: regulation of response to osmotic stress	1.91E-03
61	GO:0009751: response to salicylic acid	2.14E-03
62	GO:0098655: cation transmembrane transport	2.30E-03
63	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.30E-03
64	GO:0010555: response to mannitol	2.30E-03
65	GO:1901001: negative regulation of response to salt stress	2.30E-03
66	GO:0009753: response to jasmonic acid	2.43E-03
67	GO:1902074: response to salt	2.70E-03
68	GO:0006955: immune response	2.70E-03
69	GO:0008272: sulfate transport	2.70E-03
70	GO:0007155: cell adhesion	3.13E-03
71	GO:0009061: anaerobic respiration	3.13E-03
72	GO:0009819: drought recovery	3.13E-03
73	GO:1900150: regulation of defense response to fungus	3.13E-03
74	GO:0070413: trehalose metabolism in response to stress	3.13E-03
75	GO:0006783: heme biosynthetic process	4.05E-03
76	GO:0098656: anion transmembrane transport	4.05E-03
77	GO:0046685: response to arsenic-containing substance	4.05E-03
78	GO:0051865: protein autoubiquitination	4.05E-03
79	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.05E-03
80	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	4.05E-03
81	GO:0006979: response to oxidative stress	4.25E-03
82	GO:0007346: regulation of mitotic cell cycle	4.54E-03
83	GO:0006779: porphyrin-containing compound biosynthetic process	4.54E-03
84	GO:0048268: clathrin coat assembly	4.54E-03
85	GO:0006897: endocytosis	4.56E-03
86	GO:0051707: response to other organism	4.95E-03
87	GO:0006782: protoporphyrinogen IX biosynthetic process	5.05E-03
88	GO:0055062: phosphate ion homeostasis	5.05E-03
89	GO:0006970: response to osmotic stress	5.30E-03
90	GO:0030148: sphingolipid biosynthetic process	5.58E-03
91	GO:0010015: root morphogenesis	5.58E-03
92	GO:0009698: phenylpropanoid metabolic process	5.58E-03
93	GO:0052544: defense response by callose deposition in cell wall	5.58E-03
94	GO:0008285: negative regulation of cell proliferation	5.58E-03
95	GO:0035556: intracellular signal transduction	5.68E-03
96	GO:0010105: negative regulation of ethylene-activated signaling pathway	6.13E-03
97	GO:0071365: cellular response to auxin stimulus	6.13E-03
98	GO:0018107: peptidyl-threonine phosphorylation	6.70E-03
99	GO:0005986: sucrose biosynthetic process	6.70E-03
100	GO:0048467: gynoecium development	7.28E-03
101	GO:0002237: response to molecule of bacterial origin	7.28E-03
102	GO:0010030: positive regulation of seed germination	7.89E-03
103	GO:0070588: calcium ion transmembrane transport	7.89E-03
104	GO:0009620: response to fungus	8.66E-03
105	GO:2000377: regulation of reactive oxygen species metabolic process	9.15E-03
106	GO:0005992: trehalose biosynthetic process	9.15E-03
107	GO:0009863: salicylic acid mediated signaling pathway	9.15E-03
108	GO:0018105: peptidyl-serine phosphorylation	9.78E-03
109	GO:0009695: jasmonic acid biosynthetic process	9.80E-03
110	GO:0051302: regulation of cell division	9.80E-03
111	GO:0016567: protein ubiquitination	9.91E-03
112	GO:0006351: transcription, DNA-templated	9.95E-03
113	GO:0051321: meiotic cell cycle	1.05E-02
114	GO:0009269: response to desiccation	1.05E-02
115	GO:0000398: mRNA splicing, via spliceosome	1.10E-02
116	GO:0030433: ubiquitin-dependent ERAD pathway	1.12E-02
117	GO:0031348: negative regulation of defense response	1.12E-02
118	GO:0001944: vasculature development	1.19E-02
119	GO:0010584: pollen exine formation	1.26E-02
120	GO:0048443: stamen development	1.26E-02
121	GO:0070417: cellular response to cold	1.33E-02
122	GO:0008284: positive regulation of cell proliferation	1.33E-02
123	GO:0009790: embryo development	1.39E-02
124	GO:0000271: polysaccharide biosynthetic process	1.41E-02
125	GO:0010501: RNA secondary structure unwinding	1.41E-02
126	GO:0048868: pollen tube development	1.49E-02
127	GO:0010268: brassinosteroid homeostasis	1.49E-02
128	GO:0045489: pectin biosynthetic process	1.49E-02
129	GO:0006814: sodium ion transport	1.56E-02
130	GO:0010150: leaf senescence	1.65E-02
131	GO:0000302: response to reactive oxygen species	1.72E-02
132	GO:0016132: brassinosteroid biosynthetic process	1.72E-02
133	GO:0010090: trichome morphogenesis	1.89E-02
134	GO:0010468: regulation of gene expression	1.97E-02
135	GO:0016125: sterol metabolic process	1.98E-02
136	GO:0009639: response to red or far red light	1.98E-02
137	GO:0006904: vesicle docking involved in exocytosis	2.06E-02
138	GO:0009738: abscisic acid-activated signaling pathway	2.07E-02
139	GO:0051607: defense response to virus	2.15E-02
140	GO:0009409: response to cold	2.39E-02
141	GO:0006468: protein phosphorylation	2.39E-02
142	GO:0009627: systemic acquired resistance	2.42E-02
143	GO:0015995: chlorophyll biosynthetic process	2.52E-02
144	GO:0048481: plant ovule development	2.71E-02
145	GO:0009723: response to ethylene	2.95E-02
146	GO:0010119: regulation of stomatal movement	3.00E-02
147	GO:0006952: defense response	3.10E-02
148	GO:0045087: innate immune response	3.20E-02
149	GO:0016051: carbohydrate biosynthetic process	3.20E-02
150	GO:0006887: exocytosis	3.62E-02
151	GO:0006631: fatty acid metabolic process	3.62E-02
152	GO:0010114: response to red light	3.84E-02
153	GO:0009640: photomorphogenesis	3.84E-02
154	GO:0000209: protein polyubiquitination	3.95E-02
155	GO:0009644: response to high light intensity	4.06E-02
156	GO:0006855: drug transmembrane transport	4.28E-02
157	GO:0000165: MAPK cascade	4.39E-02
158	GO:0031347: regulation of defense response	4.39E-02
159	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.39E-02
160	GO:0007165: signal transduction	4.47E-02
161	GO:0006812: cation transport	4.51E-02
162	GO:0009846: pollen germination	4.51E-02
163	GO:0042538: hyperosmotic salinity response	4.51E-02
164	GO:0006629: lipid metabolic process	4.65E-02
165	GO:0009809: lignin biosynthetic process	4.74E-02
166	GO:0006364: rRNA processing	4.74E-02
167	GO:0009585: red, far-red light phototransduction	4.74E-02
168	GO:0006813: potassium ion transport	4.74E-02
169	GO:0010224: response to UV-B	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0080123: jasmonate-amino synthetase activity	0.00E+00
2	GO:0070566: adenylyltransferase activity	0.00E+00
3	GO:0004698: calcium-dependent protein kinase C activity	0.00E+00
4	GO:0017048: Rho GTPase binding	0.00E+00
5	GO:0008419: RNA lariat debranching enzyme activity	0.00E+00
6	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	3.57E-08
7	GO:0016629: 12-oxophytodienoate reductase activity	1.48E-06
8	GO:0003840: gamma-glutamyltransferase activity	5.48E-06
9	GO:0036374: glutathione hydrolase activity	5.48E-06
10	GO:0010181: FMN binding	1.11E-04
11	GO:0004348: glucosylceramidase activity	1.75E-04
12	GO:0071992: phytochelatin transmembrane transporter activity	1.75E-04
13	GO:0090422: thiamine pyrophosphate transporter activity	1.75E-04
14	GO:0046870: cadmium ion binding	1.75E-04
15	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	1.75E-04
16	GO:0090440: abscisic acid transporter activity	1.75E-04
17	GO:0052631: sphingolipid delta-8 desaturase activity	1.75E-04
18	GO:1901677: phosphate transmembrane transporter activity	3.96E-04
19	GO:0017022: myosin binding	3.96E-04
20	GO:0004103: choline kinase activity	3.96E-04
21	GO:0008883: glutamyl-tRNA reductase activity	3.96E-04
22	GO:0001047: core promoter binding	3.96E-04
23	GO:0003958: NADPH-hemoprotein reductase activity	3.96E-04
24	GO:0015117: thiosulfate transmembrane transporter activity	3.96E-04
25	GO:0019888: protein phosphatase regulator activity	4.39E-04
26	GO:0004842: ubiquitin-protein transferase activity	5.86E-04
27	GO:0004383: guanylate cyclase activity	6.47E-04
28	GO:0005310: dicarboxylic acid transmembrane transporter activity	6.47E-04
29	GO:0015141: succinate transmembrane transporter activity	6.47E-04
30	GO:0047274: galactinol-sucrose galactosyltransferase activity	6.47E-04
31	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	6.47E-04
32	GO:0003883: CTP synthase activity	9.23E-04
33	GO:0004351: glutamate decarboxylase activity	9.23E-04
34	GO:0001653: peptide receptor activity	9.23E-04
35	GO:0005432: calcium:sodium antiporter activity	9.23E-04
36	GO:0015131: oxaloacetate transmembrane transporter activity	9.23E-04
37	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.56E-03
38	GO:0010294: abscisic acid glucosyltransferase activity	1.56E-03
39	GO:0009922: fatty acid elongase activity	1.56E-03
40	GO:0080122: AMP transmembrane transporter activity	1.56E-03
41	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.19E-03
42	GO:0005347: ATP transmembrane transporter activity	2.30E-03
43	GO:0015217: ADP transmembrane transporter activity	2.30E-03
44	GO:0015297: antiporter activity	2.62E-03
45	GO:0019899: enzyme binding	2.70E-03
46	GO:0102425: myricetin 3-O-glucosyltransferase activity	2.70E-03
47	GO:0102360: daphnetin 3-O-glucosyltransferase activity	2.70E-03
48	GO:0016621: cinnamoyl-CoA reductase activity	2.70E-03
49	GO:0015140: malate transmembrane transporter activity	2.70E-03
50	GO:0015491: cation:cation antiporter activity	3.13E-03
51	GO:0047893: flavonol 3-O-glucosyltransferase activity	3.13E-03
52	GO:0005096: GTPase activator activity	3.19E-03
53	GO:0016301: kinase activity	4.87E-03
54	GO:0005545: 1-phosphatidylinositol binding	5.05E-03
55	GO:0015116: sulfate transmembrane transporter activity	6.13E-03
56	GO:0005262: calcium channel activity	6.70E-03
57	GO:0015114: phosphate ion transmembrane transporter activity	6.70E-03
58	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	8.51E-03
59	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	8.51E-03
60	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	8.51E-03
61	GO:0080043: quercetin 3-O-glucosyltransferase activity	8.66E-03
62	GO:0080044: quercetin 7-O-glucosyltransferase activity	8.66E-03
63	GO:0005516: calmodulin binding	9.72E-03
64	GO:0035251: UDP-glucosyltransferase activity	1.05E-02
65	GO:0004707: MAP kinase activity	1.05E-02
66	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.12E-02
67	GO:0016758: transferase activity, transferring hexosyl groups	1.16E-02
68	GO:0018024: histone-lysine N-methyltransferase activity	1.33E-02
69	GO:0030276: clathrin binding	1.49E-02
70	GO:0044212: transcription regulatory region DNA binding	1.52E-02
71	GO:0003677: DNA binding	1.54E-02
72	GO:0004518: nuclease activity	1.81E-02
73	GO:0008194: UDP-glycosyltransferase activity	1.84E-02
74	GO:0016791: phosphatase activity	1.98E-02
75	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.06E-02
76	GO:0004004: ATP-dependent RNA helicase activity	2.52E-02
77	GO:0004683: calmodulin-dependent protein kinase activity	2.52E-02
78	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.61E-02
79	GO:0043565: sequence-specific DNA binding	2.66E-02
80	GO:0015238: drug transmembrane transporter activity	2.80E-02
81	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.90E-02
82	GO:0050661: NADP binding	3.52E-02
83	GO:0035091: phosphatidylinositol binding	4.06E-02
84	GO:0004722: protein serine/threonine phosphatase activity	4.14E-02
85	GO:0003676: nucleic acid binding	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0070382: exocytic vesicle	1.75E-04
2	GO:0005634: nucleus	2.54E-04
3	GO:0000159: protein phosphatase type 2A complex	3.36E-04
4	GO:0030133: transport vesicle	3.96E-04
5	GO:0070062: extracellular exosome	9.23E-04
6	GO:0045177: apical part of cell	9.23E-04
7	GO:0031463: Cul3-RING ubiquitin ligase complex	1.91E-03
8	GO:0005743: mitochondrial inner membrane	1.96E-03
9	GO:0016604: nuclear body	4.54E-03
10	GO:0005938: cell cortex	6.70E-03
11	GO:0005905: clathrin-coated pit	1.05E-02
12	GO:0005737: cytoplasm	1.10E-02
13	GO:0030136: clathrin-coated vesicle	1.33E-02
14	GO:0005770: late endosome	1.49E-02
15	GO:0000145: exocyst	1.81E-02
16	GO:0005694: chromosome	1.81E-02
17	GO:0005667: transcription factor complex	2.42E-02
18	GO:0031902: late endosome membrane	3.62E-02
19	GO:0090406: pollen tube	3.84E-02
20	GO:0005768: endosome	4.53E-02