GO Enrichment Analysis of Co-expressed Genes with
AT2G39970
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1903647: negative regulation of chlorophyll catabolic process | 0.00E+00 |
| 2 | GO:0042362: fat-soluble vitamin biosynthetic process | 0.00E+00 |
| 3 | GO:0030149: sphingolipid catabolic process | 0.00E+00 |
| 4 | GO:0009398: FMN biosynthetic process | 0.00E+00 |
| 5 | GO:0033542: fatty acid beta-oxidation, unsaturated, even number | 0.00E+00 |
| 6 | GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase | 0.00E+00 |
| 7 | GO:0001881: receptor recycling | 0.00E+00 |
| 8 | GO:0006593: ornithine catabolic process | 0.00E+00 |
| 9 | GO:0006511: ubiquitin-dependent protein catabolic process | 1.11E-11 |
| 10 | GO:0097428: protein maturation by iron-sulfur cluster transfer | 1.60E-05 |
| 11 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.76E-05 |
| 12 | GO:0003400: regulation of COPII vesicle coating | 1.04E-04 |
| 13 | GO:0019544: arginine catabolic process to glutamate | 1.04E-04 |
| 14 | GO:0010365: positive regulation of ethylene biosynthetic process | 1.04E-04 |
| 15 | GO:0006807: nitrogen compound metabolic process | 2.14E-04 |
| 16 | GO:0009915: phloem sucrose loading | 2.44E-04 |
| 17 | GO:0006212: uracil catabolic process | 2.44E-04 |
| 18 | GO:0051788: response to misfolded protein | 2.44E-04 |
| 19 | GO:0019483: beta-alanine biosynthetic process | 2.44E-04 |
| 20 | GO:0019752: carboxylic acid metabolic process | 2.44E-04 |
| 21 | GO:0006123: mitochondrial electron transport, cytochrome c to oxygen | 2.44E-04 |
| 22 | GO:0008333: endosome to lysosome transport | 4.05E-04 |
| 23 | GO:0051646: mitochondrion localization | 4.05E-04 |
| 24 | GO:0009647: skotomorphogenesis | 5.82E-04 |
| 25 | GO:0001676: long-chain fatty acid metabolic process | 5.82E-04 |
| 26 | GO:0046836: glycolipid transport | 5.82E-04 |
| 27 | GO:0009413: response to flooding | 5.82E-04 |
| 28 | GO:0010363: regulation of plant-type hypersensitive response | 7.73E-04 |
| 29 | GO:0009651: response to salt stress | 8.27E-04 |
| 30 | GO:0032957: inositol trisphosphate metabolic process | 9.77E-04 |
| 31 | GO:0009697: salicylic acid biosynthetic process | 9.77E-04 |
| 32 | GO:0010117: photoprotection | 9.77E-04 |
| 33 | GO:0043248: proteasome assembly | 1.19E-03 |
| 34 | GO:0006561: proline biosynthetic process | 1.19E-03 |
| 35 | GO:0006121: mitochondrial electron transport, succinate to ubiquinone | 1.19E-03 |
| 36 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 1.19E-03 |
| 37 | GO:0009816: defense response to bacterium, incompatible interaction | 1.23E-03 |
| 38 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 1.29E-03 |
| 39 | GO:0010189: vitamin E biosynthetic process | 1.43E-03 |
| 40 | GO:0006744: ubiquinone biosynthetic process | 1.67E-03 |
| 41 | GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c | 1.67E-03 |
| 42 | GO:0022904: respiratory electron transport chain | 1.67E-03 |
| 43 | GO:0010044: response to aluminum ion | 1.67E-03 |
| 44 | GO:0048528: post-embryonic root development | 1.67E-03 |
| 45 | GO:0010043: response to zinc ion | 1.73E-03 |
| 46 | GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | 1.93E-03 |
| 47 | GO:0006506: GPI anchor biosynthetic process | 1.93E-03 |
| 48 | GO:0031540: regulation of anthocyanin biosynthetic process | 1.93E-03 |
| 49 | GO:0009231: riboflavin biosynthetic process | 1.93E-03 |
| 50 | GO:0006102: isocitrate metabolic process | 1.93E-03 |
| 51 | GO:0016559: peroxisome fission | 1.93E-03 |
| 52 | GO:0006644: phospholipid metabolic process | 1.93E-03 |
| 53 | GO:0006099: tricarboxylic acid cycle | 1.98E-03 |
| 54 | GO:0015996: chlorophyll catabolic process | 2.21E-03 |
| 55 | GO:0043562: cellular response to nitrogen levels | 2.21E-03 |
| 56 | GO:0006631: fatty acid metabolic process | 2.25E-03 |
| 57 | GO:0010206: photosystem II repair | 2.49E-03 |
| 58 | GO:0009060: aerobic respiration | 2.49E-03 |
| 59 | GO:0046686: response to cadmium ion | 2.56E-03 |
| 60 | GO:0009636: response to toxic substance | 2.73E-03 |
| 61 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 2.79E-03 |
| 62 | GO:0010192: mucilage biosynthetic process | 3.10E-03 |
| 63 | GO:0006790: sulfur compound metabolic process | 3.75E-03 |
| 64 | GO:0007034: vacuolar transport | 4.44E-03 |
| 65 | GO:0009266: response to temperature stimulus | 4.44E-03 |
| 66 | GO:0007031: peroxisome organization | 4.80E-03 |
| 67 | GO:0042343: indole glucosinolate metabolic process | 4.80E-03 |
| 68 | GO:0046854: phosphatidylinositol phosphorylation | 4.80E-03 |
| 69 | GO:0006636: unsaturated fatty acid biosynthetic process | 5.18E-03 |
| 70 | GO:0008299: isoprenoid biosynthetic process | 5.95E-03 |
| 71 | GO:0061077: chaperone-mediated protein folding | 6.35E-03 |
| 72 | GO:0048511: rhythmic process | 6.35E-03 |
| 73 | GO:0098542: defense response to other organism | 6.35E-03 |
| 74 | GO:0016226: iron-sulfur cluster assembly | 6.76E-03 |
| 75 | GO:0030245: cellulose catabolic process | 6.76E-03 |
| 76 | GO:0009306: protein secretion | 7.61E-03 |
| 77 | GO:0007623: circadian rhythm | 8.00E-03 |
| 78 | GO:0010150: leaf senescence | 8.00E-03 |
| 79 | GO:0042147: retrograde transport, endosome to Golgi | 8.05E-03 |
| 80 | GO:0010118: stomatal movement | 8.49E-03 |
| 81 | GO:0015991: ATP hydrolysis coupled proton transport | 8.49E-03 |
| 82 | GO:0010154: fruit development | 8.95E-03 |
| 83 | GO:0006520: cellular amino acid metabolic process | 8.95E-03 |
| 84 | GO:0006623: protein targeting to vacuole | 9.90E-03 |
| 85 | GO:0048825: cotyledon development | 9.90E-03 |
| 86 | GO:0008654: phospholipid biosynthetic process | 9.90E-03 |
| 87 | GO:0010193: response to ozone | 1.04E-02 |
| 88 | GO:0030163: protein catabolic process | 1.14E-02 |
| 89 | GO:0055085: transmembrane transport | 1.17E-02 |
| 90 | GO:0006914: autophagy | 1.19E-02 |
| 91 | GO:0016579: protein deubiquitination | 1.29E-02 |
| 92 | GO:0006888: ER to Golgi vesicle-mediated transport | 1.51E-02 |
| 93 | GO:0008219: cell death | 1.62E-02 |
| 94 | GO:0009813: flavonoid biosynthetic process | 1.68E-02 |
| 95 | GO:0009407: toxin catabolic process | 1.74E-02 |
| 96 | GO:0055114: oxidation-reduction process | 1.81E-02 |
| 97 | GO:0006839: mitochondrial transport | 2.11E-02 |
| 98 | GO:0008283: cell proliferation | 2.30E-02 |
| 99 | GO:0009926: auxin polar transport | 2.30E-02 |
| 100 | GO:0006855: drug transmembrane transport | 2.57E-02 |
| 101 | GO:0031347: regulation of defense response | 2.64E-02 |
| 102 | GO:0006812: cation transport | 2.70E-02 |
| 103 | GO:0042538: hyperosmotic salinity response | 2.70E-02 |
| 104 | GO:0009736: cytokinin-activated signaling pathway | 2.84E-02 |
| 105 | GO:0009909: regulation of flower development | 3.06E-02 |
| 106 | GO:0009626: plant-type hypersensitive response | 3.35E-02 |
| 107 | GO:0009908: flower development | 3.65E-02 |
| 108 | GO:0009624: response to nematode | 3.66E-02 |
| 109 | GO:0009058: biosynthetic process | 4.45E-02 |
| 110 | GO:0009845: seed germination | 4.54E-02 |
| 111 | GO:0042744: hydrogen peroxide catabolic process | 4.70E-02 |
| 112 | GO:0009790: embryo development | 4.79E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008117: sphinganine-1-phosphate aldolase activity | 0.00E+00 |
| 2 | GO:0003837: beta-ureidopropionase activity | 0.00E+00 |
| 3 | GO:0032441: pheophorbide a oxygenase activity | 0.00E+00 |
| 4 | GO:0010176: homogentisate phytyltransferase activity | 0.00E+00 |
| 5 | GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity | 0.00E+00 |
| 6 | GO:0004587: ornithine-oxo-acid transaminase activity | 0.00E+00 |
| 7 | GO:0008531: riboflavin kinase activity | 0.00E+00 |
| 8 | GO:0004298: threonine-type endopeptidase activity | 1.14E-20 |
| 9 | GO:0008233: peptidase activity | 5.28E-15 |
| 10 | GO:0004659: prenyltransferase activity | 9.64E-06 |
| 11 | GO:0070401: NADP+ binding | 1.04E-04 |
| 12 | GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity | 1.04E-04 |
| 13 | GO:0050200: plasmalogen synthase activity | 1.04E-04 |
| 14 | GO:0005090: Sar guanyl-nucleotide exchange factor activity | 1.04E-04 |
| 15 | GO:0016682: oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | 1.04E-04 |
| 16 | GO:0016229: steroid dehydrogenase activity | 1.04E-04 |
| 17 | GO:0010013: N-1-naphthylphthalamic acid binding | 1.04E-04 |
| 18 | GO:0050347: trans-octaprenyltranstransferase activity | 2.44E-04 |
| 19 | GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity | 2.44E-04 |
| 20 | GO:0003919: FMN adenylyltransferase activity | 2.44E-04 |
| 21 | GO:0047517: 1,4-beta-D-xylan synthase activity | 2.44E-04 |
| 22 | GO:0008517: folic acid transporter activity | 2.44E-04 |
| 23 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.73E-04 |
| 24 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 4.05E-04 |
| 25 | GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity | 4.05E-04 |
| 26 | GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity | 4.05E-04 |
| 27 | GO:0047325: inositol tetrakisphosphate 1-kinase activity | 4.05E-04 |
| 28 | GO:0004449: isocitrate dehydrogenase (NAD+) activity | 5.82E-04 |
| 29 | GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity | 5.82E-04 |
| 30 | GO:0017089: glycolipid transporter activity | 5.82E-04 |
| 31 | GO:0015368: calcium:cation antiporter activity | 7.73E-04 |
| 32 | GO:0051861: glycolipid binding | 7.73E-04 |
| 33 | GO:0015369: calcium:proton antiporter activity | 7.73E-04 |
| 34 | GO:0030170: pyridoxal phosphate binding | 8.62E-04 |
| 35 | GO:0008198: ferrous iron binding | 9.77E-04 |
| 36 | GO:0000104: succinate dehydrogenase activity | 9.77E-04 |
| 37 | GO:0008177: succinate dehydrogenase (ubiquinone) activity | 9.77E-04 |
| 38 | GO:0051538: 3 iron, 4 sulfur cluster binding | 9.77E-04 |
| 39 | GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity | 1.19E-03 |
| 40 | GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity | 1.19E-03 |
| 41 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.43E-03 |
| 42 | GO:0102391: decanoate--CoA ligase activity | 1.43E-03 |
| 43 | GO:0005347: ATP transmembrane transporter activity | 1.43E-03 |
| 44 | GO:0004656: procollagen-proline 4-dioxygenase activity | 1.43E-03 |
| 45 | GO:0051020: GTPase binding | 1.43E-03 |
| 46 | GO:0016831: carboxy-lyase activity | 1.67E-03 |
| 47 | GO:0004467: long-chain fatty acid-CoA ligase activity | 1.67E-03 |
| 48 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.90E-03 |
| 49 | GO:0000287: magnesium ion binding | 1.90E-03 |
| 50 | GO:0004033: aldo-keto reductase (NADP) activity | 1.93E-03 |
| 51 | GO:0015491: cation:cation antiporter activity | 1.93E-03 |
| 52 | GO:0005198: structural molecule activity | 2.73E-03 |
| 53 | GO:0046961: proton-transporting ATPase activity, rotational mechanism | 3.42E-03 |
| 54 | GO:0004177: aminopeptidase activity | 3.42E-03 |
| 55 | GO:0008559: xenobiotic-transporting ATPase activity | 3.42E-03 |
| 56 | GO:0004161: dimethylallyltranstransferase activity | 3.42E-03 |
| 57 | GO:0009055: electron carrier activity | 4.56E-03 |
| 58 | GO:0005528: FK506 binding | 5.56E-03 |
| 59 | GO:0051536: iron-sulfur cluster binding | 5.56E-03 |
| 60 | GO:0031418: L-ascorbic acid binding | 5.56E-03 |
| 61 | GO:0036459: thiol-dependent ubiquitinyl hydrolase activity | 6.35E-03 |
| 62 | GO:0004540: ribonuclease activity | 6.35E-03 |
| 63 | GO:0008810: cellulase activity | 7.18E-03 |
| 64 | GO:0016853: isomerase activity | 9.42E-03 |
| 65 | GO:0042802: identical protein binding | 1.02E-02 |
| 66 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 1.02E-02 |
| 67 | GO:0004843: thiol-dependent ubiquitin-specific protease activity | 1.04E-02 |
| 68 | GO:0005507: copper ion binding | 1.35E-02 |
| 69 | GO:0005096: GTPase activator activity | 1.68E-02 |
| 70 | GO:0030145: manganese ion binding | 1.80E-02 |
| 71 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.11E-02 |
| 72 | GO:0004364: glutathione transferase activity | 2.24E-02 |
| 73 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.57E-02 |
| 74 | GO:0051287: NAD binding | 2.64E-02 |
| 75 | GO:0016298: lipase activity | 2.91E-02 |
| 76 | GO:0016491: oxidoreductase activity | 2.98E-02 |
| 77 | GO:0045735: nutrient reservoir activity | 3.20E-02 |
| 78 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.28E-02 |
| 79 | GO:0022857: transmembrane transporter activity | 3.50E-02 |
| 80 | GO:0016887: ATPase activity | 3.53E-02 |
| 81 | GO:0051082: unfolded protein binding | 3.66E-02 |
| 82 | GO:0016746: transferase activity, transferring acyl groups | 3.73E-02 |
| 83 | GO:0020037: heme binding | 3.73E-02 |
| 84 | GO:0000166: nucleotide binding | 4.03E-02 |
| 85 | GO:0003676: nucleic acid binding | 4.21E-02 |
| 86 | GO:0008565: protein transporter activity | 4.87E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000502: proteasome complex | 3.52E-21 |
| 2 | GO:0005839: proteasome core complex | 1.14E-20 |
| 3 | GO:0019773: proteasome core complex, alpha-subunit complex | 1.77E-11 |
| 4 | GO:0005774: vacuolar membrane | 1.10E-07 |
| 5 | GO:0005829: cytosol | 1.12E-05 |
| 6 | GO:0005777: peroxisome | 6.74E-05 |
| 7 | GO:0019774: proteasome core complex, beta-subunit complex | 1.04E-04 |
| 8 | GO:0000325: plant-type vacuole | 1.52E-04 |
| 9 | GO:0045281: succinate dehydrogenase complex | 2.44E-04 |
| 10 | GO:0022626: cytosolic ribosome | 3.11E-04 |
| 11 | GO:0046861: glyoxysomal membrane | 4.05E-04 |
| 12 | GO:0033180: proton-transporting V-type ATPase, V1 domain | 5.82E-04 |
| 13 | GO:0005773: vacuole | 6.92E-04 |
| 14 | GO:0009526: plastid envelope | 7.73E-04 |
| 15 | GO:0055035: plastid thylakoid membrane | 9.77E-04 |
| 16 | GO:0005759: mitochondrial matrix | 1.00E-03 |
| 17 | GO:0005771: multivesicular body | 1.19E-03 |
| 18 | GO:0030904: retromer complex | 1.19E-03 |
| 19 | GO:0000421: autophagosome membrane | 1.93E-03 |
| 20 | GO:0045273: respiratory chain complex II | 1.93E-03 |
| 21 | GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) | 1.93E-03 |
| 22 | GO:0005779: integral component of peroxisomal membrane | 2.21E-03 |
| 23 | GO:0009514: glyoxysome | 2.21E-03 |
| 24 | GO:0008541: proteasome regulatory particle, lid subcomplex | 3.42E-03 |
| 25 | GO:0005750: mitochondrial respiratory chain complex III | 4.44E-03 |
| 26 | GO:0030176: integral component of endoplasmic reticulum membrane | 4.80E-03 |
| 27 | GO:0005758: mitochondrial intermembrane space | 5.56E-03 |
| 28 | GO:0042651: thylakoid membrane | 5.95E-03 |
| 29 | GO:0070469: respiratory chain | 5.95E-03 |
| 30 | GO:0031410: cytoplasmic vesicle | 6.76E-03 |
| 31 | GO:0005737: cytoplasm | 7.93E-03 |
| 32 | GO:0005789: endoplasmic reticulum membrane | 9.69E-03 |
| 33 | GO:0005783: endoplasmic reticulum | 1.21E-02 |
| 34 | GO:0005778: peroxisomal membrane | 1.24E-02 |
| 35 | GO:0005788: endoplasmic reticulum lumen | 1.40E-02 |
| 36 | GO:0005739: mitochondrion | 1.59E-02 |
| 37 | GO:0005819: spindle | 2.04E-02 |
| 38 | GO:0031902: late endosome membrane | 2.17E-02 |
| 39 | GO:0009536: plastid | 2.73E-02 |
| 40 | GO:0010008: endosome membrane | 3.28E-02 |
| 41 | GO:0009706: chloroplast inner membrane | 3.66E-02 |
| 42 | GO:0009524: phragmoplast | 4.45E-02 |