co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G39960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019428: allantoin biosynthetic process	0.00E+00
2	GO:0006721: terpenoid metabolic process	0.00E+00
3	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
4	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
5	GO:0001881: receptor recycling	0.00E+00
6	GO:0006592: ornithine biosynthetic process	0.00E+00
7	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
8	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
9	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
10	GO:0015746: citrate transport	0.00E+00
11	GO:0006511: ubiquitin-dependent protein catabolic process	1.10E-09
12	GO:0051603: proteolysis involved in cellular protein catabolic process	1.30E-06
13	GO:0006412: translation	7.39E-05
14	GO:0010265: SCF complex assembly	2.48E-04
15	GO:0006144: purine nucleobase metabolic process	2.48E-04
16	GO:0001560: regulation of cell growth by extracellular stimulus	2.48E-04
17	GO:0019628: urate catabolic process	2.48E-04
18	GO:0016487: farnesol metabolic process	2.48E-04
19	GO:0045905: positive regulation of translational termination	5.49E-04
20	GO:0045901: positive regulation of translational elongation	5.49E-04
21	GO:0046939: nucleotide phosphorylation	5.49E-04
22	GO:0006452: translational frameshifting	5.49E-04
23	GO:0051788: response to misfolded protein	5.49E-04
24	GO:0016925: protein sumoylation	6.25E-04
25	GO:1902626: assembly of large subunit precursor of preribosome	8.92E-04
26	GO:0045793: positive regulation of cell size	8.92E-04
27	GO:0034227: tRNA thio-modification	8.92E-04
28	GO:0008333: endosome to lysosome transport	8.92E-04
29	GO:0009926: auxin polar transport	1.14E-03
30	GO:0006168: adenine salvage	1.27E-03
31	GO:0071786: endoplasmic reticulum tubular network organization	1.27E-03
32	GO:0051289: protein homotetramerization	1.27E-03
33	GO:0006882: cellular zinc ion homeostasis	1.27E-03
34	GO:0001676: long-chain fatty acid metabolic process	1.27E-03
35	GO:0032877: positive regulation of DNA endoreduplication	1.27E-03
36	GO:0046836: glycolipid transport	1.27E-03
37	GO:0006166: purine ribonucleoside salvage	1.27E-03
38	GO:0006107: oxaloacetate metabolic process	1.27E-03
39	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.27E-03
40	GO:0009963: positive regulation of flavonoid biosynthetic process	1.27E-03
41	GO:0009647: skotomorphogenesis	1.27E-03
42	GO:0051781: positive regulation of cell division	1.70E-03
43	GO:0010363: regulation of plant-type hypersensitive response	1.70E-03
44	GO:0006621: protein retention in ER lumen	1.70E-03
45	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.17E-03
46	GO:1902183: regulation of shoot apical meristem development	2.17E-03
47	GO:0044209: AMP salvage	2.17E-03
48	GO:0045116: protein neddylation	2.17E-03
49	GO:0036065: fucosylation	2.17E-03
50	GO:0009735: response to cytokinin	2.50E-03
51	GO:0043248: proteasome assembly	2.67E-03
52	GO:0009612: response to mechanical stimulus	3.21E-03
53	GO:1901001: negative regulation of response to salt stress	3.21E-03
54	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.21E-03
55	GO:0010044: response to aluminum ion	3.79E-03
56	GO:0048528: post-embryonic root development	3.79E-03
57	GO:1900056: negative regulation of leaf senescence	3.79E-03
58	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.79E-03
59	GO:0006506: GPI anchor biosynthetic process	4.39E-03
60	GO:0009690: cytokinin metabolic process	4.39E-03
61	GO:0048658: anther wall tapetum development	4.39E-03
62	GO:0031540: regulation of anthocyanin biosynthetic process	4.39E-03
63	GO:0006102: isocitrate metabolic process	4.39E-03
64	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.39E-03
65	GO:0009642: response to light intensity	4.39E-03
66	GO:0006526: arginine biosynthetic process	5.03E-03
67	GO:0010204: defense response signaling pathway, resistance gene-independent	5.03E-03
68	GO:0022900: electron transport chain	5.03E-03
69	GO:0080144: amino acid homeostasis	5.70E-03
70	GO:0015780: nucleotide-sugar transport	5.70E-03
71	GO:0098656: anion transmembrane transport	5.70E-03
72	GO:0009245: lipid A biosynthetic process	5.70E-03
73	GO:0009821: alkaloid biosynthetic process	5.70E-03
74	GO:0010043: response to zinc ion	5.75E-03
75	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	6.01E-03
76	GO:0009853: photorespiration	6.30E-03
77	GO:0071577: zinc II ion transmembrane transport	6.40E-03
78	GO:0000103: sulfate assimilation	7.12E-03
79	GO:0006032: chitin catabolic process	7.12E-03
80	GO:0043069: negative regulation of programmed cell death	7.12E-03
81	GO:0046686: response to cadmium ion	7.16E-03
82	GO:0072593: reactive oxygen species metabolic process	7.88E-03
83	GO:0000272: polysaccharide catabolic process	7.88E-03
84	GO:0008361: regulation of cell size	8.66E-03
85	GO:0006820: anion transport	8.66E-03
86	GO:0042254: ribosome biogenesis	9.31E-03
87	GO:0006807: nitrogen compound metabolic process	9.47E-03
88	GO:0006626: protein targeting to mitochondrion	9.47E-03
89	GO:0006108: malate metabolic process	9.47E-03
90	GO:0006006: glucose metabolic process	9.47E-03
91	GO:0006855: drug transmembrane transport	9.49E-03
92	GO:0007034: vacuolar transport	1.03E-02
93	GO:0010223: secondary shoot formation	1.03E-02
94	GO:0009934: regulation of meristem structural organization	1.03E-02
95	GO:0002237: response to molecule of bacterial origin	1.03E-02
96	GO:0009969: xyloglucan biosynthetic process	1.12E-02
97	GO:0006071: glycerol metabolic process	1.21E-02
98	GO:0006289: nucleotide-excision repair	1.30E-02
99	GO:0006487: protein N-linked glycosylation	1.30E-02
100	GO:0009116: nucleoside metabolic process	1.30E-02
101	GO:0000027: ribosomal large subunit assembly	1.30E-02
102	GO:0019953: sexual reproduction	1.39E-02
103	GO:0061077: chaperone-mediated protein folding	1.49E-02
104	GO:0015031: protein transport	1.52E-02
105	GO:0007005: mitochondrion organization	1.59E-02
106	GO:0019748: secondary metabolic process	1.59E-02
107	GO:0010089: xylem development	1.79E-02
108	GO:0010584: pollen exine formation	1.79E-02
109	GO:0016117: carotenoid biosynthetic process	1.90E-02
110	GO:0042147: retrograde transport, endosome to Golgi	1.90E-02
111	GO:0009751: response to salicylic acid	1.92E-02
112	GO:0080022: primary root development	2.01E-02
113	GO:0000413: protein peptidyl-prolyl isomerization	2.01E-02
114	GO:0010051: xylem and phloem pattern formation	2.01E-02
115	GO:0010118: stomatal movement	2.01E-02
116	GO:0015991: ATP hydrolysis coupled proton transport	2.01E-02
117	GO:0042631: cellular response to water deprivation	2.01E-02
118	GO:0006662: glycerol ether metabolic process	2.12E-02
119	GO:0048825: cotyledon development	2.34E-02
120	GO:0006623: protein targeting to vacuole	2.34E-02
121	GO:0010193: response to ozone	2.46E-02
122	GO:0080156: mitochondrial mRNA modification	2.46E-02
123	GO:0030163: protein catabolic process	2.70E-02
124	GO:0006914: autophagy	2.82E-02
125	GO:0009828: plant-type cell wall loosening	2.82E-02
126	GO:0010286: heat acclimation	2.94E-02
127	GO:0000910: cytokinesis	3.07E-02
128	GO:0009615: response to virus	3.19E-02
129	GO:0006979: response to oxidative stress	3.22E-02
130	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.32E-02
131	GO:0006888: ER to Golgi vesicle-mediated transport	3.59E-02
132	GO:0009733: response to auxin	3.77E-02
133	GO:0009817: defense response to fungus, incompatible interaction	3.86E-02
134	GO:0009832: plant-type cell wall biogenesis	4.00E-02
135	GO:0009826: unidimensional cell growth	4.03E-02
136	GO:0006499: N-terminal protein myristoylation	4.14E-02
137	GO:0009631: cold acclimation	4.28E-02
138	GO:0045087: innate immune response	4.56E-02
139	GO:0034599: cellular response to oxidative stress	4.71E-02
140	GO:0006099: tricarboxylic acid cycle	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0005212: structural constituent of eye lens	0.00E+00
2	GO:0003796: lysozyme activity	0.00E+00
3	GO:0047886: farnesol dehydrogenase activity	0.00E+00
4	GO:0008777: acetylornithine deacetylase activity	0.00E+00
5	GO:0033971: hydroxyisourate hydrolase activity	0.00E+00
6	GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity	0.00E+00
7	GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	0.00E+00
8	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
9	GO:0016881: acid-amino acid ligase activity	0.00E+00
10	GO:0050152: omega-amidase activity	0.00E+00
11	GO:0004298: threonine-type endopeptidase activity	6.62E-18
12	GO:0008233: peptidase activity	8.17E-12
13	GO:0003735: structural constituent of ribosome	6.14E-07
14	GO:0031386: protein tag	6.78E-05
15	GO:0019786: Atg8-specific protease activity	2.48E-04
16	GO:0015137: citrate transmembrane transporter activity	2.48E-04
17	GO:0008517: folic acid transporter activity	5.49E-04
18	GO:0019781: NEDD8 activating enzyme activity	5.49E-04
19	GO:0008805: carbon-monoxide oxygenase activity	5.49E-04
20	GO:0018708: thiol S-methyltransferase activity	5.49E-04
21	GO:0019779: Atg8 activating enzyme activity	5.49E-04
22	GO:0003729: mRNA binding	6.39E-04
23	GO:0052692: raffinose alpha-galactosidase activity	8.92E-04
24	GO:0004557: alpha-galactosidase activity	8.92E-04
25	GO:0003999: adenine phosphoribosyltransferase activity	1.27E-03
26	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.27E-03
27	GO:0017089: glycolipid transporter activity	1.27E-03
28	GO:0019201: nucleotide kinase activity	1.27E-03
29	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.27E-03
30	GO:0004576: oligosaccharyl transferase activity	1.70E-03
31	GO:0019776: Atg8 ligase activity	1.70E-03
32	GO:0010011: auxin binding	1.70E-03
33	GO:0051861: glycolipid binding	1.70E-03
34	GO:0046923: ER retention sequence binding	1.70E-03
35	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.70E-03
36	GO:0070628: proteasome binding	1.70E-03
37	GO:0004040: amidase activity	2.17E-03
38	GO:0008641: small protein activating enzyme activity	2.17E-03
39	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	2.17E-03
40	GO:0004872: receptor activity	2.47E-03
41	GO:0031177: phosphopantetheine binding	2.67E-03
42	GO:0031593: polyubiquitin binding	2.67E-03
43	GO:0000035: acyl binding	3.21E-03
44	GO:0004602: glutathione peroxidase activity	3.21E-03
45	GO:0004656: procollagen-proline 4-dioxygenase activity	3.21E-03
46	GO:0102391: decanoate--CoA ligase activity	3.21E-03
47	GO:0004017: adenylate kinase activity	3.21E-03
48	GO:0004467: long-chain fatty acid-CoA ligase activity	3.79E-03
49	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	3.79E-03
50	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.79E-03
51	GO:0042162: telomeric DNA binding	3.79E-03
52	GO:0008121: ubiquinol-cytochrome-c reductase activity	3.79E-03
53	GO:0004722: protein serine/threonine phosphatase activity	3.90E-03
54	GO:0043022: ribosome binding	4.39E-03
55	GO:0015288: porin activity	4.39E-03
56	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	4.39E-03
57	GO:0008308: voltage-gated anion channel activity	5.03E-03
58	GO:0000989: transcription factor activity, transcription factor binding	5.70E-03
59	GO:0008417: fucosyltransferase activity	5.70E-03
60	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.70E-03
61	GO:0050897: cobalt ion binding	5.75E-03
62	GO:0003746: translation elongation factor activity	6.30E-03
63	GO:0003697: single-stranded DNA binding	6.30E-03
64	GO:0016844: strictosidine synthase activity	6.40E-03
65	GO:0004568: chitinase activity	7.12E-03
66	GO:0046961: proton-transporting ATPase activity, rotational mechanism	7.88E-03
67	GO:0008559: xenobiotic-transporting ATPase activity	7.88E-03
68	GO:0008794: arsenate reductase (glutaredoxin) activity	7.88E-03
69	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.49E-03
70	GO:0051287: NAD binding	9.85E-03
71	GO:0003712: transcription cofactor activity	1.12E-02
72	GO:0031418: L-ascorbic acid binding	1.30E-02
73	GO:0005385: zinc ion transmembrane transporter activity	1.30E-02
74	GO:0043130: ubiquitin binding	1.30E-02
75	GO:0005528: FK506 binding	1.30E-02
76	GO:0015035: protein disulfide oxidoreductase activity	1.61E-02
77	GO:0047134: protein-disulfide reductase activity	1.90E-02
78	GO:0005199: structural constituent of cell wall	2.12E-02
79	GO:0046873: metal ion transmembrane transporter activity	2.12E-02
80	GO:0050662: coenzyme binding	2.23E-02
81	GO:0004791: thioredoxin-disulfide reductase activity	2.23E-02
82	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.46E-02
83	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.70E-02
84	GO:0003684: damaged DNA binding	2.82E-02
85	GO:0008237: metallopeptidase activity	2.94E-02
86	GO:0016887: ATPase activity	3.39E-02
87	GO:0004721: phosphoprotein phosphatase activity	3.59E-02
88	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.86E-02
89	GO:0015238: drug transmembrane transporter activity	4.00E-02
90	GO:0004601: peroxidase activity	4.19E-02
91	GO:0016788: hydrolase activity, acting on ester bonds	4.26E-02
92	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.56E-02
93	GO:0003993: acid phosphatase activity	4.71E-02
94	GO:0008422: beta-glucosidase activity	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	2.05E-19
2	GO:0005839: proteasome core complex	6.62E-18
3	GO:0005774: vacuolar membrane	8.93E-10
4	GO:0005829: cytosol	4.77E-09
5	GO:0005773: vacuole	2.28E-08
6	GO:0022626: cytosolic ribosome	2.43E-08
7	GO:0022625: cytosolic large ribosomal subunit	7.44E-08
8	GO:0019773: proteasome core complex, alpha-subunit complex	7.56E-08
9	GO:0005840: ribosome	9.64E-06
10	GO:0005783: endoplasmic reticulum	7.46E-05
11	GO:0015934: large ribosomal subunit	7.52E-05
12	GO:0009510: plasmodesmatal desmotubule	2.48E-04
13	GO:0031234: extrinsic component of cytoplasmic side of plasma membrane	2.48E-04
14	GO:0005788: endoplasmic reticulum lumen	4.75E-04
15	GO:0005697: telomerase holoenzyme complex	5.49E-04
16	GO:0005750: mitochondrial respiratory chain complex III	7.98E-04
17	GO:0009530: primary cell wall	8.92E-04
18	GO:0046861: glyoxysomal membrane	8.92E-04
19	GO:0005794: Golgi apparatus	1.12E-03
20	GO:0045271: respiratory chain complex I	1.20E-03
21	GO:0071782: endoplasmic reticulum tubular network	1.27E-03
22	GO:0005775: vacuolar lumen	1.27E-03
23	GO:0033180: proton-transporting V-type ATPase, V1 domain	1.27E-03
24	GO:0005737: cytoplasm	1.40E-03
25	GO:0005776: autophagosome	1.70E-03
26	GO:0005747: mitochondrial respiratory chain complex I	2.14E-03
27	GO:0008250: oligosaccharyltransferase complex	2.17E-03
28	GO:0005771: multivesicular body	2.67E-03
29	GO:0030904: retromer complex	2.67E-03
30	GO:0000421: autophagosome membrane	4.39E-03
31	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	4.39E-03
32	GO:0046930: pore complex	5.03E-03
33	GO:0009514: glyoxysome	5.03E-03
34	GO:0005618: cell wall	6.55E-03
35	GO:0022627: cytosolic small ribosomal subunit	7.45E-03
36	GO:0016020: membrane	7.48E-03
37	GO:0008541: proteasome regulatory particle, lid subcomplex	7.88E-03
38	GO:0009508: plastid chromosome	9.47E-03
39	GO:0031966: mitochondrial membrane	1.02E-02
40	GO:0009506: plasmodesma	1.05E-02
41	GO:0005758: mitochondrial intermembrane space	1.30E-02
42	GO:0070469: respiratory chain	1.39E-02
43	GO:0005741: mitochondrial outer membrane	1.49E-02
44	GO:0031410: cytoplasmic vesicle	1.59E-02
45	GO:0005886: plasma membrane	1.65E-02
46	GO:0005732: small nucleolar ribonucleoprotein complex	1.71E-02
47	GO:0009507: chloroplast	1.83E-02
48	GO:0005789: endoplasmic reticulum membrane	2.08E-02
49	GO:0009504: cell plate	2.34E-02
50	GO:0032580: Golgi cisterna membrane	2.82E-02
51	GO:0009295: nucleoid	2.94E-02
52	GO:0000325: plant-type vacuole	4.28E-02
53	GO:0005819: spindle	4.86E-02