GO Enrichment Analysis of Co-expressed Genes with
AT2G39900
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 2 | GO:0006223: uracil salvage | 0.00E+00 |
| 3 | GO:0009735: response to cytokinin | 3.55E-07 |
| 4 | GO:0007017: microtubule-based process | 4.19E-06 |
| 5 | GO:0071588: hydrogen peroxide mediated signaling pathway | 6.42E-05 |
| 6 | GO:0005980: glycogen catabolic process | 6.42E-05 |
| 7 | GO:0010028: xanthophyll cycle | 6.42E-05 |
| 8 | GO:0009409: response to cold | 1.12E-04 |
| 9 | GO:0016122: xanthophyll metabolic process | 1.55E-04 |
| 10 | GO:0006241: CTP biosynthetic process | 3.82E-04 |
| 11 | GO:0006165: nucleoside diphosphate phosphorylation | 3.82E-04 |
| 12 | GO:0006228: UTP biosynthetic process | 3.82E-04 |
| 13 | GO:0010731: protein glutathionylation | 3.82E-04 |
| 14 | GO:0043572: plastid fission | 3.82E-04 |
| 15 | GO:0006412: translation | 5.02E-04 |
| 16 | GO:0015976: carbon utilization | 5.10E-04 |
| 17 | GO:0006183: GTP biosynthetic process | 5.10E-04 |
| 18 | GO:0045727: positive regulation of translation | 5.10E-04 |
| 19 | GO:0015994: chlorophyll metabolic process | 5.10E-04 |
| 20 | GO:0044206: UMP salvage | 5.10E-04 |
| 21 | GO:2000122: negative regulation of stomatal complex development | 5.10E-04 |
| 22 | GO:0009902: chloroplast relocation | 5.10E-04 |
| 23 | GO:0042938: dipeptide transport | 5.10E-04 |
| 24 | GO:0010037: response to carbon dioxide | 5.10E-04 |
| 25 | GO:0043097: pyrimidine nucleoside salvage | 6.45E-04 |
| 26 | GO:0006461: protein complex assembly | 6.45E-04 |
| 27 | GO:0006206: pyrimidine nucleobase metabolic process | 7.90E-04 |
| 28 | GO:0009631: cold acclimation | 9.34E-04 |
| 29 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 9.40E-04 |
| 30 | GO:0010019: chloroplast-nucleus signaling pathway | 9.40E-04 |
| 31 | GO:0006865: amino acid transport | 9.77E-04 |
| 32 | GO:0019827: stem cell population maintenance | 1.26E-03 |
| 33 | GO:0008610: lipid biosynthetic process | 1.26E-03 |
| 34 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 1.26E-03 |
| 35 | GO:0030091: protein repair | 1.26E-03 |
| 36 | GO:0045454: cell redox homeostasis | 1.41E-03 |
| 37 | GO:0009657: plastid organization | 1.44E-03 |
| 38 | GO:0032544: plastid translation | 1.44E-03 |
| 39 | GO:0006783: heme biosynthetic process | 1.62E-03 |
| 40 | GO:0005982: starch metabolic process | 1.81E-03 |
| 41 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.01E-03 |
| 42 | GO:0048829: root cap development | 2.01E-03 |
| 43 | GO:0009089: lysine biosynthetic process via diaminopimelate | 2.21E-03 |
| 44 | GO:0005983: starch catabolic process | 2.42E-03 |
| 45 | GO:0015706: nitrate transport | 2.42E-03 |
| 46 | GO:0009266: response to temperature stimulus | 2.87E-03 |
| 47 | GO:0010143: cutin biosynthetic process | 2.87E-03 |
| 48 | GO:0010020: chloroplast fission | 2.87E-03 |
| 49 | GO:0009116: nucleoside metabolic process | 3.57E-03 |
| 50 | GO:0000027: ribosomal large subunit assembly | 3.57E-03 |
| 51 | GO:0003333: amino acid transmembrane transport | 4.08E-03 |
| 52 | GO:0006012: galactose metabolic process | 4.60E-03 |
| 53 | GO:0009411: response to UV | 4.60E-03 |
| 54 | GO:0000413: protein peptidyl-prolyl isomerization | 5.43E-03 |
| 55 | GO:0042254: ribosome biogenesis | 6.60E-03 |
| 56 | GO:0000302: response to reactive oxygen species | 6.61E-03 |
| 57 | GO:0032502: developmental process | 6.92E-03 |
| 58 | GO:0015979: photosynthesis | 9.17E-03 |
| 59 | GO:0006974: cellular response to DNA damage stimulus | 9.22E-03 |
| 60 | GO:0015995: chlorophyll biosynthetic process | 9.57E-03 |
| 61 | GO:0009817: defense response to fungus, incompatible interaction | 1.03E-02 |
| 62 | GO:0000160: phosphorelay signal transduction system | 1.07E-02 |
| 63 | GO:0010119: regulation of stomatal movement | 1.14E-02 |
| 64 | GO:0006629: lipid metabolic process | 1.19E-02 |
| 65 | GO:0009408: response to heat | 1.19E-02 |
| 66 | GO:0009637: response to blue light | 1.22E-02 |
| 67 | GO:0034599: cellular response to oxidative stress | 1.25E-02 |
| 68 | GO:0008152: metabolic process | 1.31E-02 |
| 69 | GO:0006631: fatty acid metabolic process | 1.37E-02 |
| 70 | GO:0042542: response to hydrogen peroxide | 1.41E-02 |
| 71 | GO:0051707: response to other organism | 1.45E-02 |
| 72 | GO:0000209: protein polyubiquitination | 1.50E-02 |
| 73 | GO:0005975: carbohydrate metabolic process | 1.58E-02 |
| 74 | GO:0009734: auxin-activated signaling pathway | 1.68E-02 |
| 75 | GO:0042538: hyperosmotic salinity response | 1.71E-02 |
| 76 | GO:0006364: rRNA processing | 1.80E-02 |
| 77 | GO:0009585: red, far-red light phototransduction | 1.80E-02 |
| 78 | GO:0009736: cytokinin-activated signaling pathway | 1.80E-02 |
| 79 | GO:0006857: oligopeptide transport | 1.89E-02 |
| 80 | GO:0055114: oxidation-reduction process | 2.29E-02 |
| 81 | GO:0045893: positive regulation of transcription, DNA-templated | 2.43E-02 |
| 82 | GO:0042744: hydrogen peroxide catabolic process | 2.97E-02 |
| 83 | GO:0016036: cellular response to phosphate starvation | 3.24E-02 |
| 84 | GO:0007623: circadian rhythm | 3.41E-02 |
| 85 | GO:0010150: leaf senescence | 3.41E-02 |
| 86 | GO:0006470: protein dephosphorylation | 3.75E-02 |
| 87 | GO:0042742: defense response to bacterium | 4.27E-02 |
| 88 | GO:0009658: chloroplast organization | 4.65E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 2 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 3 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 4 | GO:0051920: peroxiredoxin activity | 1.57E-05 |
| 5 | GO:0019843: rRNA binding | 2.25E-05 |
| 6 | GO:0016209: antioxidant activity | 2.83E-05 |
| 7 | GO:0003735: structural constituent of ribosome | 4.30E-05 |
| 8 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 6.42E-05 |
| 9 | GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | 6.42E-05 |
| 10 | GO:0008184: glycogen phosphorylase activity | 6.42E-05 |
| 11 | GO:0005534: galactose binding | 6.42E-05 |
| 12 | GO:0004853: uroporphyrinogen decarboxylase activity | 6.42E-05 |
| 13 | GO:0004645: phosphorylase activity | 6.42E-05 |
| 14 | GO:0019203: carbohydrate phosphatase activity | 6.42E-05 |
| 15 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 1.55E-04 |
| 16 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 2.63E-04 |
| 17 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 2.63E-04 |
| 18 | GO:0050734: hydroxycinnamoyltransferase activity | 2.63E-04 |
| 19 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 2.63E-04 |
| 20 | GO:0070402: NADPH binding | 2.63E-04 |
| 21 | GO:0004550: nucleoside diphosphate kinase activity | 3.82E-04 |
| 22 | GO:0004845: uracil phosphoribosyltransferase activity | 5.10E-04 |
| 23 | GO:0042936: dipeptide transporter activity | 5.10E-04 |
| 24 | GO:0010328: auxin influx transmembrane transporter activity | 5.10E-04 |
| 25 | GO:0005200: structural constituent of cytoskeleton | 5.65E-04 |
| 26 | GO:0004130: cytochrome-c peroxidase activity | 7.90E-04 |
| 27 | GO:0016688: L-ascorbate peroxidase activity | 7.90E-04 |
| 28 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 9.40E-04 |
| 29 | GO:0004849: uridine kinase activity | 9.40E-04 |
| 30 | GO:0004620: phospholipase activity | 1.10E-03 |
| 31 | GO:0004034: aldose 1-epimerase activity | 1.26E-03 |
| 32 | GO:0005525: GTP binding | 1.38E-03 |
| 33 | GO:0005198: structural molecule activity | 1.45E-03 |
| 34 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.51E-03 |
| 35 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 1.62E-03 |
| 36 | GO:0047617: acyl-CoA hydrolase activity | 1.81E-03 |
| 37 | GO:0003924: GTPase activity | 1.84E-03 |
| 38 | GO:0015171: amino acid transmembrane transporter activity | 1.92E-03 |
| 39 | GO:0047372: acylglycerol lipase activity | 2.21E-03 |
| 40 | GO:0004565: beta-galactosidase activity | 2.64E-03 |
| 41 | GO:0004089: carbonate dehydratase activity | 2.64E-03 |
| 42 | GO:0008266: poly(U) RNA binding | 2.87E-03 |
| 43 | GO:0005528: FK506 binding | 3.57E-03 |
| 44 | GO:0001085: RNA polymerase II transcription factor binding | 5.72E-03 |
| 45 | GO:0016787: hydrolase activity | 6.00E-03 |
| 46 | GO:0016853: isomerase activity | 6.01E-03 |
| 47 | GO:0050662: coenzyme binding | 6.01E-03 |
| 48 | GO:0004601: peroxidase activity | 6.48E-03 |
| 49 | GO:0048038: quinone binding | 6.61E-03 |
| 50 | GO:0000156: phosphorelay response regulator activity | 7.24E-03 |
| 51 | GO:0030247: polysaccharide binding | 9.57E-03 |
| 52 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 1.14E-02 |
| 53 | GO:0004364: glutathione transferase activity | 1.41E-02 |
| 54 | GO:0043621: protein self-association | 1.54E-02 |
| 55 | GO:0015293: symporter activity | 1.58E-02 |
| 56 | GO:0031625: ubiquitin protein ligase binding | 1.93E-02 |
| 57 | GO:0004650: polygalacturonase activity | 2.16E-02 |
| 58 | GO:0030170: pyridoxal phosphate binding | 2.92E-02 |
| 59 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 2.97E-02 |
| 60 | GO:0042802: identical protein binding | 4.04E-02 |
| 61 | GO:0003824: catalytic activity | 4.68E-02 |
| 62 | GO:0005215: transporter activity | 4.71E-02 |
| 63 | GO:0016788: hydrolase activity, acting on ester bonds | 4.71E-02 |
| 64 | GO:0003682: chromatin binding | 4.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009570: chloroplast stroma | 7.54E-27 |
| 3 | GO:0009507: chloroplast | 8.97E-21 |
| 4 | GO:0009941: chloroplast envelope | 2.02E-18 |
| 5 | GO:0009579: thylakoid | 3.05E-12 |
| 6 | GO:0009534: chloroplast thylakoid | 3.23E-12 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 1.24E-11 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 8.20E-07 |
| 9 | GO:0031977: thylakoid lumen | 2.99E-06 |
| 10 | GO:0010287: plastoglobule | 2.01E-05 |
| 11 | GO:0009533: chloroplast stromal thylakoid | 2.15E-05 |
| 12 | GO:0030095: chloroplast photosystem II | 1.23E-04 |
| 13 | GO:0015630: microtubule cytoskeleton | 3.82E-04 |
| 14 | GO:0005840: ribosome | 4.03E-04 |
| 15 | GO:0010319: stromule | 5.65E-04 |
| 16 | GO:0005874: microtubule | 1.08E-03 |
| 17 | GO:0045298: tubulin complex | 1.62E-03 |
| 18 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.62E-03 |
| 19 | GO:0016020: membrane | 2.21E-03 |
| 20 | GO:0000311: plastid large ribosomal subunit | 2.42E-03 |
| 21 | GO:0000312: plastid small ribosomal subunit | 2.87E-03 |
| 22 | GO:0048046: apoplast | 3.57E-03 |
| 23 | GO:0009523: photosystem II | 6.31E-03 |
| 24 | GO:0022625: cytosolic large ribosomal subunit | 8.45E-03 |
| 25 | GO:0005667: transcription factor complex | 9.22E-03 |
| 26 | GO:0009707: chloroplast outer membrane | 1.03E-02 |
| 27 | GO:0015934: large ribosomal subunit | 1.14E-02 |
| 28 | GO:0022627: cytosolic small ribosomal subunit | 4.16E-02 |