co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G39460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070918: production of small RNA involved in gene silencing by RNA	0.00E+00
2	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
3	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
4	GO:0090239: regulation of histone H4 acetylation	0.00E+00
5	GO:0000740: nuclear membrane fusion	0.00E+00
6	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
7	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
8	GO:0034050: host programmed cell death induced by symbiont	0.00E+00
9	GO:0007530: sex determination	0.00E+00
10	GO:0006412: translation	4.10E-141
11	GO:0042254: ribosome biogenesis	4.39E-50
12	GO:0000027: ribosomal large subunit assembly	2.35E-09
13	GO:0009735: response to cytokinin	2.11E-06
14	GO:0009955: adaxial/abaxial pattern specification	4.63E-06
15	GO:0000028: ribosomal small subunit assembly	1.12E-05
16	GO:1902626: assembly of large subunit precursor of preribosome	1.89E-05
17	GO:0006820: anion transport	6.09E-05
18	GO:0006626: protein targeting to mitochondrion	7.45E-05
19	GO:0006407: rRNA export from nucleus	3.44E-04
20	GO:0015801: aromatic amino acid transport	3.44E-04
21	GO:2001006: regulation of cellulose biosynthetic process	3.44E-04
22	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.44E-04
23	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.44E-04
24	GO:0098656: anion transmembrane transport	5.47E-04
25	GO:0000387: spliceosomal snRNP assembly	6.45E-04
26	GO:0045905: positive regulation of translational termination	7.51E-04
27	GO:0071668: plant-type cell wall assembly	7.51E-04
28	GO:0045901: positive regulation of translational elongation	7.51E-04
29	GO:0045041: protein import into mitochondrial intermembrane space	7.51E-04
30	GO:0048569: post-embryonic animal organ development	7.51E-04
31	GO:0043981: histone H4-K5 acetylation	7.51E-04
32	GO:0006452: translational frameshifting	7.51E-04
33	GO:0010198: synergid death	7.51E-04
34	GO:0000398: mRNA splicing, via spliceosome	1.08E-03
35	GO:0009150: purine ribonucleotide metabolic process	1.21E-03
36	GO:0002181: cytoplasmic translation	1.21E-03
37	GO:0045793: positive regulation of cell size	1.21E-03
38	GO:0042256: mature ribosome assembly	1.21E-03
39	GO:0006165: nucleoside diphosphate phosphorylation	1.75E-03
40	GO:0006228: UTP biosynthetic process	1.75E-03
41	GO:0006164: purine nucleotide biosynthetic process	1.75E-03
42	GO:0009558: embryo sac cellularization	1.75E-03
43	GO:0032877: positive regulation of DNA endoreduplication	1.75E-03
44	GO:0070301: cellular response to hydrogen peroxide	1.75E-03
45	GO:0051085: chaperone mediated protein folding requiring cofactor	1.75E-03
46	GO:0006241: CTP biosynthetic process	1.75E-03
47	GO:0008283: cell proliferation	2.09E-03
48	GO:0051781: positive regulation of cell division	2.35E-03
49	GO:0042274: ribosomal small subunit biogenesis	2.35E-03
50	GO:0006183: GTP biosynthetic process	2.35E-03
51	GO:0006621: protein retention in ER lumen	2.35E-03
52	GO:0009965: leaf morphogenesis	2.43E-03
53	GO:1902183: regulation of shoot apical meristem development	3.00E-03
54	GO:0000413: protein peptidyl-prolyl isomerization	3.20E-03
55	GO:0000470: maturation of LSU-rRNA	3.71E-03
56	GO:0010183: pollen tube guidance	3.98E-03
57	GO:0006414: translational elongation	4.27E-03
58	GO:0042026: protein refolding	4.47E-03
59	GO:0006458: 'de novo' protein folding	4.47E-03
60	GO:0016444: somatic cell DNA recombination	4.47E-03
61	GO:1901001: negative regulation of response to salt stress	4.47E-03
62	GO:0000911: cytokinesis by cell plate formation	4.47E-03
63	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	5.27E-03
64	GO:0009793: embryo development ending in seed dormancy	5.84E-03
65	GO:0050821: protein stabilization	6.13E-03
66	GO:0046686: response to cadmium ion	6.59E-03
67	GO:0010204: defense response signaling pathway, resistance gene-independent	7.03E-03
68	GO:0044030: regulation of DNA methylation	7.03E-03
69	GO:0009808: lignin metabolic process	7.03E-03
70	GO:0006189: 'de novo' IMP biosynthetic process	7.97E-03
71	GO:0009060: aerobic respiration	7.97E-03
72	GO:0015780: nucleotide-sugar transport	7.97E-03
73	GO:0009245: lipid A biosynthetic process	7.97E-03
74	GO:0006413: translational initiation	8.81E-03
75	GO:0015770: sucrose transport	1.11E-02
76	GO:0010015: root morphogenesis	1.11E-02
77	GO:0006913: nucleocytoplasmic transport	1.11E-02
78	GO:0009617: response to bacterium	1.21E-02
79	GO:0006790: sulfur compound metabolic process	1.22E-02
80	GO:0012501: programmed cell death	1.22E-02
81	GO:0010102: lateral root morphogenesis	1.33E-02
82	GO:0010628: positive regulation of gene expression	1.33E-02
83	GO:2000028: regulation of photoperiodism, flowering	1.33E-02
84	GO:0009651: response to salt stress	1.38E-02
85	GO:0009409: response to cold	1.40E-02
86	GO:0006446: regulation of translational initiation	1.45E-02
87	GO:0048467: gynoecium development	1.45E-02
88	GO:0030150: protein import into mitochondrial matrix	1.83E-02
89	GO:0006289: nucleotide-excision repair	1.83E-02
90	GO:0003333: amino acid transmembrane transport	2.10E-02
91	GO:0051260: protein homooligomerization	2.10E-02
92	GO:0010431: seed maturation	2.10E-02
93	GO:0006334: nucleosome assembly	2.10E-02
94	GO:0061077: chaperone-mediated protein folding	2.10E-02
95	GO:0006306: DNA methylation	2.10E-02
96	GO:0007005: mitochondrion organization	2.24E-02
97	GO:0040007: growth	2.38E-02
98	GO:0010584: pollen exine formation	2.53E-02
99	GO:0010197: polar nucleus fusion	2.99E-02
100	GO:0006457: protein folding	3.37E-02
101	GO:0015031: protein transport	3.44E-02
102	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.47E-02
103	GO:0010090: trichome morphogenesis	3.81E-02
104	GO:0000910: cytokinesis	4.33E-02
105	GO:0010029: regulation of seed germination	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
2	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
3	GO:0003735: structural constituent of ribosome	2.70E-168
4	GO:0003729: mRNA binding	5.79E-39
5	GO:0019843: rRNA binding	1.46E-14
6	GO:0015288: porin activity	1.34E-07
7	GO:0008308: voltage-gated anion channel activity	1.60E-05
8	GO:0008097: 5S rRNA binding	4.18E-05
9	GO:0003746: translation elongation factor activity	2.07E-04
10	GO:0047326: inositol tetrakisphosphate 5-kinase activity	3.44E-04
11	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	3.44E-04
12	GO:0005080: protein kinase C binding	3.44E-04
13	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	3.44E-04
14	GO:0035614: snRNA stem-loop binding	3.44E-04
15	GO:0000824: inositol tetrakisphosphate 3-kinase activity	3.44E-04
16	GO:0043022: ribosome binding	3.72E-04
17	GO:0001055: RNA polymerase II activity	6.45E-04
18	GO:0030619: U1 snRNA binding	7.51E-04
19	GO:0015173: aromatic amino acid transmembrane transporter activity	7.51E-04
20	GO:0001054: RNA polymerase I activity	8.68E-04
21	GO:0044183: protein binding involved in protein folding	8.68E-04
22	GO:0001056: RNA polymerase III activity	9.90E-04
23	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.13E-03
24	GO:0070181: small ribosomal subunit rRNA binding	1.21E-03
25	GO:0004550: nucleoside diphosphate kinase activity	1.75E-03
26	GO:0047627: adenylylsulfatase activity	1.75E-03
27	GO:0070628: proteasome binding	2.35E-03
28	GO:0010011: auxin binding	2.35E-03
29	GO:0046923: ER retention sequence binding	2.35E-03
30	GO:0005275: amine transmembrane transporter activity	3.00E-03
31	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.06E-03
32	GO:0031593: polyubiquitin binding	3.71E-03
33	GO:0031177: phosphopantetheine binding	3.71E-03
34	GO:0004872: receptor activity	3.98E-03
35	GO:0003723: RNA binding	4.27E-03
36	GO:0000035: acyl binding	4.47E-03
37	GO:0051920: peroxiredoxin activity	4.47E-03
38	GO:0051082: unfolded protein binding	4.80E-03
39	GO:0005338: nucleotide-sugar transmembrane transporter activity	5.27E-03
40	GO:0008121: ubiquinol-cytochrome-c reductase activity	5.27E-03
41	GO:0016209: antioxidant activity	6.13E-03
42	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	6.13E-03
43	GO:0008794: arsenate reductase (glutaredoxin) activity	1.11E-02
44	GO:0008515: sucrose transmembrane transporter activity	1.11E-02
45	GO:0015266: protein channel activity	1.33E-02
46	GO:0031072: heat shock protein binding	1.33E-02
47	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.54E-02
48	GO:0051119: sugar transmembrane transporter activity	1.58E-02
49	GO:0051536: iron-sulfur cluster binding	1.83E-02
50	GO:0043130: ubiquitin binding	1.83E-02
51	GO:0005216: ion channel activity	1.96E-02
52	GO:0004298: threonine-type endopeptidase activity	2.10E-02
53	GO:0003684: damaged DNA binding	3.98E-02
54	GO:0008237: metallopeptidase activity	4.15E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0005840: ribosome	2.24E-124
3	GO:0022625: cytosolic large ribosomal subunit	3.76E-106
4	GO:0022626: cytosolic ribosome	4.73E-100
5	GO:0022627: cytosolic small ribosomal subunit	5.23E-70
6	GO:0005737: cytoplasm	1.02E-36
7	GO:0005829: cytosol	8.97E-33
8	GO:0005730: nucleolus	3.91E-31
9	GO:0009506: plasmodesma	3.08E-23
10	GO:0015934: large ribosomal subunit	2.87E-18
11	GO:0005774: vacuolar membrane	2.92E-16
12	GO:0016020: membrane	1.50E-13
13	GO:0015935: small ribosomal subunit	7.08E-11
14	GO:0005773: vacuole	8.11E-10
15	GO:0005618: cell wall	1.04E-07
16	GO:0046930: pore complex	2.25E-07
17	GO:0005886: plasma membrane	4.74E-07
18	GO:0009507: chloroplast	1.39E-06
19	GO:0005853: eukaryotic translation elongation factor 1 complex	1.89E-05
20	GO:0005665: DNA-directed RNA polymerase II, core complex	6.09E-05
21	GO:0000419: DNA-directed RNA polymerase V complex	1.26E-04
22	GO:0005741: mitochondrial outer membrane	1.95E-04
23	GO:0030686: 90S preribosome	3.44E-04
24	GO:0005736: DNA-directed RNA polymerase I complex	5.47E-04
25	GO:0005685: U1 snRNP	5.47E-04
26	GO:0005666: DNA-directed RNA polymerase III complex	6.45E-04
27	GO:0071011: precatalytic spliceosome	6.45E-04
28	GO:0035145: exon-exon junction complex	7.51E-04
29	GO:0000418: DNA-directed RNA polymerase IV complex	7.52E-04
30	GO:0071013: catalytic step 2 spliceosome	8.68E-04
31	GO:0048471: perinuclear region of cytoplasm	8.68E-04
32	GO:0005732: small nucleolar ribonucleoprotein complex	9.91E-04
33	GO:0019013: viral nucleocapsid	1.12E-03
34	GO:0034719: SMN-Sm protein complex	1.21E-03
35	GO:0005758: mitochondrial intermembrane space	1.74E-03
36	GO:1990726: Lsm1-7-Pat1 complex	1.75E-03
37	GO:0005682: U5 snRNP	2.35E-03
38	GO:0005687: U4 snRNP	3.00E-03
39	GO:0097526: spliceosomal tri-snRNP complex	3.00E-03
40	GO:0005681: spliceosomal complex	3.79E-03
41	GO:0005689: U12-type spliceosomal complex	4.47E-03
42	GO:0016272: prefoldin complex	4.47E-03
43	GO:0031359: integral component of chloroplast outer membrane	5.27E-03
44	GO:0071004: U2-type prespliceosome	6.13E-03
45	GO:0005688: U6 snRNP	6.13E-03
46	GO:0005654: nucleoplasm	6.17E-03
47	GO:0046540: U4/U6 x U5 tri-snRNP complex	7.03E-03
48	GO:0005742: mitochondrial outer membrane translocase complex	7.03E-03
49	GO:0015030: Cajal body	8.96E-03
50	GO:0005686: U2 snRNP	1.00E-02
51	GO:0005852: eukaryotic translation initiation factor 3 complex	1.11E-02
52	GO:0005750: mitochondrial respiratory chain complex III	1.45E-02
53	GO:0000502: proteasome complex	1.79E-02
54	GO:0070469: respiratory chain	1.96E-02
55	GO:0005839: proteasome core complex	2.10E-02
56	GO:0009706: chloroplast inner membrane	2.55E-02
57	GO:0005743: mitochondrial inner membrane	3.28E-02
58	GO:0030529: intracellular ribonucleoprotein complex	4.51E-02
59	GO:0000932: P-body	4.51E-02
60	GO:0005788: endoplasmic reticulum lumen	4.69E-02