Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G39350

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009560: embryo sac egg cell differentiation0.00E+00
2GO:0019481: L-alanine catabolic process, by transamination0.00E+00
3GO:0009408: response to heat8.00E-06
4GO:0048700: acquisition of desiccation tolerance in seed4.45E-05
5GO:0006562: proline catabolic process4.45E-05
6GO:0034628: 'de novo' NAD biosynthetic process from aspartate4.45E-05
7GO:0006611: protein export from nucleus1.10E-04
8GO:0010372: positive regulation of gibberellin biosynthetic process1.10E-04
9GO:0010133: proline catabolic process to glutamate1.10E-04
10GO:0061077: chaperone-mediated protein folding1.30E-04
11GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.89E-04
12GO:0046168: glycerol-3-phosphate catabolic process1.89E-04
13GO:0051176: positive regulation of sulfur metabolic process1.89E-04
14GO:0006081: cellular aldehyde metabolic process1.89E-04
15GO:0000055: ribosomal large subunit export from nucleus1.89E-04
16GO:0006072: glycerol-3-phosphate metabolic process2.78E-04
17GO:0009399: nitrogen fixation2.78E-04
18GO:0051131: chaperone-mediated protein complex assembly2.78E-04
19GO:0006537: glutamate biosynthetic process2.78E-04
20GO:0009413: response to flooding2.78E-04
21GO:0046686: response to cadmium ion3.42E-04
22GO:0010286: heat acclimation3.55E-04
23GO:0033320: UDP-D-xylose biosynthetic process3.73E-04
24GO:0006536: glutamate metabolic process3.73E-04
25GO:0001709: cell fate determination3.73E-04
26GO:0009615: response to virus3.99E-04
27GO:0009816: defense response to bacterium, incompatible interaction4.21E-04
28GO:0006457: protein folding4.67E-04
29GO:0009435: NAD biosynthetic process4.75E-04
30GO:0006090: pyruvate metabolic process4.75E-04
31GO:2000762: regulation of phenylpropanoid metabolic process4.75E-04
32GO:0030041: actin filament polymerization4.75E-04
33GO:0007029: endoplasmic reticulum organization4.75E-04
34GO:0042732: D-xylose metabolic process5.82E-04
35GO:0048317: seed morphogenesis5.82E-04
36GO:0009737: response to abscisic acid6.01E-04
37GO:0006401: RNA catabolic process8.11E-04
38GO:0006402: mRNA catabolic process9.32E-04
39GO:0050821: protein stabilization9.32E-04
40GO:0045010: actin nucleation9.32E-04
41GO:0046685: response to arsenic-containing substance1.19E-03
42GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay1.19E-03
43GO:0009060: aerobic respiration1.19E-03
44GO:0090332: stomatal closure1.32E-03
45GO:0048829: root cap development1.47E-03
46GO:0006820: anion transport1.77E-03
47GO:0010105: negative regulation of ethylene-activated signaling pathway1.77E-03
48GO:0006108: malate metabolic process1.92E-03
49GO:0034605: cellular response to heat2.09E-03
50GO:0009266: response to temperature stimulus2.09E-03
51GO:0009225: nucleotide-sugar metabolic process2.25E-03
52GO:0010167: response to nitrate2.25E-03
53GO:0042753: positive regulation of circadian rhythm2.42E-03
54GO:0030150: protein import into mitochondrial matrix2.60E-03
55GO:0010187: negative regulation of seed germination2.60E-03
56GO:0051260: protein homooligomerization2.96E-03
57GO:0009617: response to bacterium3.13E-03
58GO:0016226: iron-sulfur cluster assembly3.14E-03
59GO:0030433: ubiquitin-dependent ERAD pathway3.14E-03
60GO:0031348: negative regulation of defense response3.14E-03
61GO:0009686: gibberellin biosynthetic process3.33E-03
62GO:0009294: DNA mediated transformation3.33E-03
63GO:0009306: protein secretion3.53E-03
64GO:0009960: endosperm development4.14E-03
65GO:0048544: recognition of pollen4.35E-03
66GO:0042752: regulation of circadian rhythm4.35E-03
67GO:0009414: response to water deprivation4.90E-03
68GO:0031047: gene silencing by RNA4.99E-03
69GO:0080167: response to karrikin5.00E-03
70GO:1901657: glycosyl compound metabolic process5.22E-03
71GO:0007267: cell-cell signaling5.68E-03
72GO:0001666: response to hypoxia6.15E-03
73GO:0010311: lateral root formation7.65E-03
74GO:0009834: plant-type secondary cell wall biogenesis7.91E-03
75GO:0006499: N-terminal protein myristoylation7.91E-03
76GO:0009873: ethylene-activated signaling pathway9.53E-03
77GO:0042542: response to hydrogen peroxide1.01E-02
78GO:0009644: response to high light intensity1.10E-02
79GO:0006364: rRNA processing1.28E-02
80GO:0048316: seed development1.48E-02
81GO:0009553: embryo sac development1.61E-02
82GO:0009742: brassinosteroid mediated signaling pathway1.72E-02
83GO:0000398: mRNA splicing, via spliceosome1.83E-02
84GO:0009845: seed germination2.05E-02
85GO:0009651: response to salt stress2.34E-02
86GO:0007623: circadian rhythm2.43E-02
87GO:0010228: vegetative to reproductive phase transition of meristem2.51E-02
88GO:0007166: cell surface receptor signaling pathway2.68E-02
89GO:0010468: regulation of gene expression2.76E-02
90GO:0006970: response to osmotic stress3.50E-02
91GO:0009723: response to ethylene3.68E-02
92GO:0048366: leaf development3.73E-02
93GO:0010200: response to chitin3.96E-02
94GO:0016192: vesicle-mediated transport4.01E-02
95GO:0005975: carbohydrate metabolic process4.03E-02
96GO:0046777: protein autophosphorylation4.06E-02
97GO:0006886: intracellular protein transport4.50E-02
RankGO TermAdjusted P value
1GO:0008987: quinolinate synthetase A activity0.00E+00
2GO:0033721: aldehyde dehydrogenase (NADP+) activity0.00E+00
3GO:0030621: U4 snRNA binding0.00E+00
4GO:0030544: Hsp70 protein binding4.45E-05
5GO:0004657: proline dehydrogenase activity4.45E-05
6GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.89E-04
7GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity1.89E-04
8GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity1.89E-04
9GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity2.78E-04
10GO:0043023: ribosomal large subunit binding2.78E-04
11GO:0004351: glutamate decarboxylase activity2.78E-04
12GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity3.73E-04
13GO:0043015: gamma-tubulin binding3.73E-04
14GO:0004470: malic enzyme activity3.73E-04
15GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor3.73E-04
16GO:0017070: U6 snRNA binding4.75E-04
17GO:0008381: mechanically-gated ion channel activity4.75E-04
18GO:0008948: oxaloacetate decarboxylase activity4.75E-04
19GO:0002020: protease binding4.75E-04
20GO:0004356: glutamate-ammonia ligase activity4.75E-04
21GO:0048040: UDP-glucuronate decarboxylase activity5.82E-04
22GO:0004029: aldehyde dehydrogenase (NAD) activity5.82E-04
23GO:0070403: NAD+ binding6.94E-04
24GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.94E-04
25GO:0051287: NAD binding9.92E-04
26GO:0031625: ubiquitin protein ligase binding1.21E-03
27GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.32E-03
28GO:0008047: enzyme activator activity1.47E-03
29GO:0051082: unfolded protein binding1.54E-03
30GO:0000175: 3'-5'-exoribonuclease activity1.92E-03
31GO:0004540: ribonuclease activity2.96E-03
32GO:0008536: Ran GTPase binding4.14E-03
33GO:0005524: ATP binding4.77E-03
34GO:0004518: nuclease activity4.99E-03
35GO:0102483: scopolin beta-glucosidase activity6.89E-03
36GO:0003729: mRNA binding8.37E-03
37GO:0008422: beta-glucosidase activity9.27E-03
38GO:0004712: protein serine/threonine/tyrosine kinase activity9.27E-03
39GO:0051539: 4 iron, 4 sulfur cluster binding9.55E-03
40GO:0043621: protein self-association1.10E-02
41GO:0000166: nucleotide binding1.31E-02
42GO:0003779: actin binding1.61E-02
43GO:0008026: ATP-dependent helicase activity1.72E-02
44GO:0030246: carbohydrate binding1.77E-02
45GO:0004252: serine-type endopeptidase activity2.08E-02
46GO:0030170: pyridoxal phosphate binding2.08E-02
47GO:0008565: protein transporter activity2.20E-02
48GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.31E-02
49GO:0008017: microtubule binding2.51E-02
50GO:0042803: protein homodimerization activity4.55E-02
RankGO TermAdjusted P value
1GO:0005829: cytosol3.80E-07
2GO:0016442: RISC complex4.45E-05
3GO:0030688: preribosome, small subunit precursor4.45E-05
4GO:0009331: glycerol-3-phosphate dehydrogenase complex2.78E-04
5GO:0000932: P-body3.99E-04
6GO:0000178: exosome (RNase complex)4.75E-04
7GO:0016363: nuclear matrix6.94E-04
8GO:0046540: U4/U6 x U5 tri-snRNP complex1.06E-03
9GO:0010494: cytoplasmic stress granule1.19E-03
10GO:0009506: plasmodesma1.31E-03
11GO:0048471: perinuclear region of cytoplasm1.61E-03
12GO:0005618: cell wall1.77E-03
13GO:0019013: viral nucleocapsid1.92E-03
14GO:0005886: plasma membrane2.72E-03
15GO:0005744: mitochondrial inner membrane presequence translocase complex3.53E-03
16GO:0080008: Cul4-RING E3 ubiquitin ligase complex4.43E-03
17GO:0032580: Golgi cisterna membrane5.45E-03
18GO:0005774: vacuolar membrane5.99E-03
19GO:0005788: endoplasmic reticulum lumen6.39E-03
20GO:0005737: cytoplasm6.79E-03
21GO:0019005: SCF ubiquitin ligase complex7.39E-03
22GO:0005643: nuclear pore7.39E-03
23GO:0005794: Golgi apparatus8.05E-03
24GO:0005635: nuclear envelope1.35E-02
25GO:0005681: spliceosomal complex1.45E-02
26GO:0010008: endosome membrane1.48E-02
27GO:0016607: nuclear speck1.48E-02
28GO:0009524: phragmoplast2.01E-02
29GO:0005802: trans-Golgi network2.11E-02
30GO:0005768: endosome2.40E-02
31GO:0005634: nucleus4.56E-02
32GO:0005743: mitochondrial inner membrane4.85E-02
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Gene type



Gene DE type