Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G39270

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006593: ornithine catabolic process0.00E+00
2GO:0071284: cellular response to lead ion0.00E+00
3GO:0042430: indole-containing compound metabolic process0.00E+00
4GO:0023052: signaling0.00E+00
5GO:1903647: negative regulation of chlorophyll catabolic process0.00E+00
6GO:0042362: fat-soluble vitamin biosynthetic process0.00E+00
7GO:0006721: terpenoid metabolic process0.00E+00
8GO:1901799: negative regulation of proteasomal protein catabolic process0.00E+00
9GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
10GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase0.00E+00
11GO:0001881: receptor recycling0.00E+00
12GO:0006592: ornithine biosynthetic process0.00E+00
13GO:0055114: oxidation-reduction process5.90E-07
14GO:0006511: ubiquitin-dependent protein catabolic process1.60E-06
15GO:0051603: proteolysis involved in cellular protein catabolic process2.45E-05
16GO:0006099: tricarboxylic acid cycle1.02E-04
17GO:0015991: ATP hydrolysis coupled proton transport1.89E-04
18GO:0015986: ATP synthesis coupled proton transport2.33E-04
19GO:0016487: farnesol metabolic process2.53E-04
20GO:0031539: positive regulation of anthocyanin metabolic process2.53E-04
21GO:0031468: nuclear envelope reassembly2.53E-04
22GO:0010265: SCF complex assembly2.53E-04
23GO:0019544: arginine catabolic process to glutamate2.53E-04
24GO:0015798: myo-inositol transport2.53E-04
25GO:0009915: phloem sucrose loading5.59E-04
26GO:0006212: uracil catabolic process5.59E-04
27GO:0019483: beta-alanine biosynthetic process5.59E-04
28GO:0080026: response to indolebutyric acid5.59E-04
29GO:0006123: mitochondrial electron transport, cytochrome c to oxygen5.59E-04
30GO:0046686: response to cadmium ion7.64E-04
31GO:0007034: vacuolar transport8.19E-04
32GO:0009853: photorespiration8.63E-04
33GO:0008333: endosome to lysosome transport9.07E-04
34GO:0051646: mitochondrion localization9.07E-04
35GO:0043617: cellular response to sucrose starvation9.07E-04
36GO:0045793: positive regulation of cell size9.07E-04
37GO:0044746: amino acid transmembrane export9.07E-04
38GO:0007030: Golgi organization9.14E-04
39GO:0006631: fatty acid metabolic process1.07E-03
40GO:0009963: positive regulation of flavonoid biosynthetic process1.29E-03
41GO:1901332: negative regulation of lateral root development1.29E-03
42GO:0006168: adenine salvage1.29E-03
43GO:0080024: indolebutyric acid metabolic process1.29E-03
44GO:0001676: long-chain fatty acid metabolic process1.29E-03
45GO:0032877: positive regulation of DNA endoreduplication1.29E-03
46GO:0006166: purine ribonucleoside salvage1.29E-03
47GO:0061077: chaperone-mediated protein folding1.35E-03
48GO:0015992: proton transport1.35E-03
49GO:0010017: red or far-red light signaling pathway1.48E-03
50GO:0051781: positive regulation of cell division1.73E-03
51GO:0010387: COP9 signalosome assembly1.73E-03
52GO:0032366: intracellular sterol transport1.73E-03
53GO:0006096: glycolytic process2.13E-03
54GO:0018344: protein geranylgeranylation2.21E-03
55GO:0009697: salicylic acid biosynthetic process2.21E-03
56GO:0098719: sodium ion import across plasma membrane2.21E-03
57GO:0006564: L-serine biosynthetic process2.21E-03
58GO:0005513: detection of calcium ion2.21E-03
59GO:0044209: AMP salvage2.21E-03
60GO:0006623: protein targeting to vacuole2.54E-03
61GO:0009735: response to cytokinin2.62E-03
62GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.72E-03
63GO:0003006: developmental process involved in reproduction2.72E-03
64GO:0002238: response to molecule of fungal origin2.72E-03
65GO:0006561: proline biosynthetic process2.72E-03
66GO:0006121: mitochondrial electron transport, succinate to ubiquinone2.72E-03
67GO:0006120: mitochondrial electron transport, NADH to ubiquinone3.27E-03
68GO:0010189: vitamin E biosynthetic process3.27E-03
69GO:0006914: autophagy3.29E-03
70GO:0045454: cell redox homeostasis3.54E-03
71GO:0000338: protein deneddylation3.86E-03
72GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c3.86E-03
73GO:0022904: respiratory electron transport chain3.86E-03
74GO:0010044: response to aluminum ion3.86E-03
75GO:0009816: defense response to bacterium, incompatible interaction4.15E-03
76GO:0009787: regulation of abscisic acid-activated signaling pathway4.48E-03
77GO:0009690: cytokinin metabolic process4.48E-03
78GO:0006506: GPI anchor biosynthetic process4.48E-03
79GO:0048658: anther wall tapetum development4.48E-03
80GO:0006102: isocitrate metabolic process4.48E-03
81GO:0009651: response to salt stress4.73E-03
82GO:0009817: defense response to fungus, incompatible interaction5.11E-03
83GO:0010099: regulation of photomorphogenesis5.13E-03
84GO:0015996: chlorophyll catabolic process5.13E-03
85GO:0006526: arginine biosynthetic process5.13E-03
86GO:0043562: cellular response to nitrogen levels5.13E-03
87GO:0006972: hyperosmotic response5.13E-03
88GO:0009821: alkaloid biosynthetic process5.81E-03
89GO:0080144: amino acid homeostasis5.81E-03
90GO:0006754: ATP biosynthetic process5.81E-03
91GO:0009060: aerobic respiration5.81E-03
92GO:0051453: regulation of intracellular pH6.52E-03
93GO:0006896: Golgi to vacuole transport7.26E-03
94GO:0000103: sulfate assimilation7.26E-03
95GO:0043069: negative regulation of programmed cell death7.26E-03
96GO:0072593: reactive oxygen species metabolic process8.04E-03
97GO:0009640: photomorphogenesis8.35E-03
98GO:0012501: programmed cell death8.83E-03
99GO:0002213: defense response to insect8.83E-03
100GO:0016925: protein sumoylation8.83E-03
101GO:0071365: cellular response to auxin stimulus8.83E-03
102GO:0006807: nitrogen compound metabolic process9.66E-03
103GO:0009691: cytokinin biosynthetic process9.66E-03
104GO:0006108: malate metabolic process9.66E-03
105GO:0006006: glucose metabolic process9.66E-03
106GO:0006094: gluconeogenesis9.66E-03
107GO:0002237: response to molecule of bacterial origin1.05E-02
108GO:0009266: response to temperature stimulus1.05E-02
109GO:0009585: red, far-red light phototransduction1.13E-02
110GO:0010039: response to iron ion1.14E-02
111GO:0042753: positive regulation of circadian rhythm1.23E-02
112GO:0006636: unsaturated fatty acid biosynthetic process1.23E-02
113GO:0009116: nucleoside metabolic process1.32E-02
114GO:0006487: protein N-linked glycosylation1.32E-02
115GO:0044550: secondary metabolite biosynthetic process1.38E-02
116GO:0048316: seed development1.38E-02
117GO:0019953: sexual reproduction1.42E-02
118GO:0009695: jasmonic acid biosynthetic process1.42E-02
119GO:0031408: oxylipin biosynthetic process1.52E-02
120GO:0048511: rhythmic process1.52E-02
121GO:0015031: protein transport1.59E-02
122GO:0009624: response to nematode1.61E-02
123GO:0035428: hexose transmembrane transport1.62E-02
124GO:0019748: secondary metabolic process1.62E-02
125GO:0009625: response to insect1.72E-02
126GO:0019722: calcium-mediated signaling1.83E-02
127GO:0042147: retrograde transport, endosome to Golgi1.94E-02
128GO:0080022: primary root development2.05E-02
129GO:0034220: ion transmembrane transport2.05E-02
130GO:0010051: xylem and phloem pattern formation2.05E-02
131GO:0010118: stomatal movement2.05E-02
132GO:0009958: positive gravitropism2.16E-02
133GO:0010154: fruit development2.16E-02
134GO:0006662: glycerol ether metabolic process2.16E-02
135GO:0046323: glucose import2.16E-02
136GO:0009646: response to absence of light2.27E-02
137GO:0061025: membrane fusion2.27E-02
138GO:0006814: sodium ion transport2.27E-02
139GO:0042744: hydrogen peroxide catabolic process2.30E-02
140GO:0055072: iron ion homeostasis2.39E-02
141GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.51E-02
142GO:0010193: response to ozone2.51E-02
143GO:0009828: plant-type cell wall loosening2.87E-02
144GO:0071805: potassium ion transmembrane transport3.00E-02
145GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.12E-02
146GO:0000910: cytokinesis3.13E-02
147GO:0009615: response to virus3.26E-02
148GO:0042742: defense response to bacterium3.32E-02
149GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.39E-02
150GO:0006950: response to stress3.66E-02
151GO:0008219: cell death3.93E-02
152GO:0009832: plant-type cell wall biogenesis4.08E-02
153GO:0010311: lateral root formation4.08E-02
154GO:0048767: root hair elongation4.08E-02
155GO:0009826: unidimensional cell growth4.14E-02
156GO:0009555: pollen development4.14E-02
157GO:0006499: N-terminal protein myristoylation4.22E-02
158GO:0006811: ion transport4.22E-02
159GO:0010218: response to far red light4.22E-02
160GO:0010043: response to zinc ion4.36E-02
161GO:0007568: aging4.36E-02
162GO:0006865: amino acid transport4.51E-02
163GO:0034599: cellular response to oxidative stress4.80E-02
RankGO TermAdjusted P value
1GO:0004587: ornithine-oxo-acid transaminase activity0.00E+00
2GO:0003837: beta-ureidopropionase activity0.00E+00
3GO:0009940: amino-terminal vacuolar sorting propeptide binding0.00E+00
4GO:0032441: pheophorbide a oxygenase activity0.00E+00
5GO:0010176: homogentisate phytyltransferase activity0.00E+00
6GO:0033961: cis-stilbene-oxide hydrolase activity0.00E+00
7GO:0047886: farnesol dehydrogenase activity0.00E+00
8GO:0008777: acetylornithine deacetylase activity0.00E+00
9GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity0.00E+00
10GO:0004298: threonine-type endopeptidase activity1.32E-13
11GO:0008233: peptidase activity9.11E-07
12GO:0008137: NADH dehydrogenase (ubiquinone) activity1.69E-05
13GO:0008794: arsenate reductase (glutaredoxin) activity2.38E-05
14GO:0009055: electron carrier activity4.60E-05
15GO:0005507: copper ion binding9.26E-05
16GO:0004347: glucose-6-phosphate isomerase activity2.53E-04
17GO:0070401: NADP+ binding2.53E-04
18GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity2.53E-04
19GO:0004321: fatty-acyl-CoA synthase activity2.53E-04
20GO:0010209: vacuolar sorting signal binding2.53E-04
21GO:0019786: Atg8-specific protease activity2.53E-04
22GO:0016229: steroid dehydrogenase activity2.53E-04
23GO:0015035: protein disulfide oxidoreductase activity4.56E-04
24GO:0019779: Atg8 activating enzyme activity5.59E-04
25GO:0051980: iron-nicotianamine transmembrane transporter activity5.59E-04
26GO:0005366: myo-inositol:proton symporter activity5.59E-04
27GO:0008517: folic acid transporter activity5.59E-04
28GO:0004617: phosphoglycerate dehydrogenase activity5.59E-04
29GO:0004129: cytochrome-c oxidase activity5.62E-04
30GO:0046961: proton-transporting ATPase activity, rotational mechanism5.62E-04
31GO:0010277: chlorophyllide a oxygenase [overall] activity9.07E-04
32GO:0004557: alpha-galactosidase activity9.07E-04
33GO:0004663: Rab geranylgeranyltransferase activity9.07E-04
34GO:0016805: dipeptidase activity9.07E-04
35GO:0052692: raffinose alpha-galactosidase activity9.07E-04
36GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity9.07E-04
37GO:0051539: 4 iron, 4 sulfur cluster binding1.01E-03
38GO:0005528: FK506 binding1.12E-03
39GO:0015186: L-glutamine transmembrane transporter activity1.29E-03
40GO:0003999: adenine phosphoribosyltransferase activity1.29E-03
41GO:0004449: isocitrate dehydrogenase (NAD+) activity1.29E-03
42GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.29E-03
43GO:0051537: 2 iron, 2 sulfur cluster binding1.30E-03
44GO:0051287: NAD binding1.50E-03
45GO:0015369: calcium:proton antiporter activity1.73E-03
46GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.73E-03
47GO:0004576: oligosaccharyl transferase activity1.73E-03
48GO:0019776: Atg8 ligase activity1.73E-03
49GO:0004301: epoxide hydrolase activity1.73E-03
50GO:0004659: prenyltransferase activity1.73E-03
51GO:0015368: calcium:cation antiporter activity1.73E-03
52GO:0010011: auxin binding1.73E-03
53GO:0008177: succinate dehydrogenase (ubiquinone) activity2.21E-03
54GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity2.21E-03
55GO:0004040: amidase activity2.21E-03
56GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.21E-03
57GO:0000104: succinate dehydrogenase activity2.21E-03
58GO:0031386: protein tag2.21E-03
59GO:0051538: 3 iron, 4 sulfur cluster binding2.21E-03
60GO:0020037: heme binding2.50E-03
61GO:0051117: ATPase binding2.72E-03
62GO:0016615: malate dehydrogenase activity2.72E-03
63GO:0004866: endopeptidase inhibitor activity2.72E-03
64GO:0102391: decanoate--CoA ligase activity3.27E-03
65GO:0030060: L-malate dehydrogenase activity3.27E-03
66GO:0008235: metalloexopeptidase activity3.86E-03
67GO:0008121: ubiquinol-cytochrome-c reductase activity3.86E-03
68GO:0008320: protein transmembrane transporter activity3.86E-03
69GO:0004467: long-chain fatty acid-CoA ligase activity3.86E-03
70GO:0004033: aldo-keto reductase (NADP) activity4.48E-03
71GO:0004869: cysteine-type endopeptidase inhibitor activity4.48E-03
72GO:0015491: cation:cation antiporter activity4.48E-03
73GO:0015078: hydrogen ion transmembrane transporter activity5.13E-03
74GO:0016491: oxidoreductase activity5.44E-03
75GO:0016207: 4-coumarate-CoA ligase activity5.81E-03
76GO:0000989: transcription factor activity, transcription factor binding5.81E-03
77GO:0050897: cobalt ion binding5.91E-03
78GO:0045309: protein phosphorylated amino acid binding6.52E-03
79GO:0016844: strictosidine synthase activity6.52E-03
80GO:0042626: ATPase activity, coupled to transmembrane movement of substances7.32E-03
81GO:0015386: potassium:proton antiporter activity8.04E-03
82GO:0019904: protein domain specific binding8.04E-03
83GO:0004177: aminopeptidase activity8.04E-03
84GO:0008559: xenobiotic-transporting ATPase activity8.04E-03
85GO:0015198: oligopeptide transporter activity8.83E-03
86GO:0016788: hydrolase activity, acting on ester bonds9.64E-03
87GO:0004022: alcohol dehydrogenase (NAD) activity9.66E-03
88GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.76E-03
89GO:0008266: poly(U) RNA binding1.05E-02
90GO:0043130: ubiquitin binding1.32E-02
91GO:0051536: iron-sulfur cluster binding1.32E-02
92GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.38E-02
93GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.72E-02
94GO:0047134: protein-disulfide reductase activity1.94E-02
95GO:0004791: thioredoxin-disulfide reductase activity2.27E-02
96GO:0005355: glucose transmembrane transporter activity2.27E-02
97GO:0050662: coenzyme binding2.27E-02
98GO:0004872: receptor activity2.39E-02
99GO:0004197: cysteine-type endopeptidase activity2.63E-02
100GO:0015385: sodium:proton antiporter activity2.75E-02
101GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.75E-02
102GO:0046872: metal ion binding2.78E-02
103GO:0008237: metallopeptidase activity3.00E-02
104GO:0016597: amino acid binding3.13E-02
105GO:0015250: water channel activity3.26E-02
106GO:0051213: dioxygenase activity3.26E-02
107GO:0016887: ATPase activity3.50E-02
108GO:0009931: calcium-dependent protein serine/threonine kinase activity3.52E-02
109GO:0004683: calmodulin-dependent protein kinase activity3.66E-02
110GO:0004222: metalloendopeptidase activity4.22E-02
111GO:0004601: peroxidase activity4.30E-02
112GO:0030145: manganese ion binding4.36E-02
113GO:0003993: acid phosphatase activity4.80E-02
RankGO TermAdjusted P value
1GO:0000502: proteasome complex3.54E-14
2GO:0005839: proteasome core complex1.32E-13
3GO:0005773: vacuole6.03E-10
4GO:0005747: mitochondrial respiratory chain complex I1.10E-07
5GO:0005783: endoplasmic reticulum2.07E-07
6GO:0005753: mitochondrial proton-transporting ATP synthase complex1.41E-06
7GO:0019773: proteasome core complex, alpha-subunit complex7.49E-06
8GO:0005774: vacuolar membrane1.30E-05
9GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)4.39E-05
10GO:0000325: plant-type vacuole7.90E-05
11GO:0045271: respiratory chain complex I8.85E-05
12GO:0005759: mitochondrial matrix1.36E-04
13GO:0005829: cytosol2.16E-04
14GO:0000421: autophagosome membrane2.35E-04
15GO:0045273: respiratory chain complex II2.35E-04
16GO:0019774: proteasome core complex, beta-subunit complex2.53E-04
17GO:0005788: endoplasmic reticulum lumen4.92E-04
18GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain5.59E-04
19GO:0045281: succinate dehydrogenase complex5.59E-04
20GO:0005750: mitochondrial respiratory chain complex III8.19E-04
21GO:0046861: glyoxysomal membrane9.07E-04
22GO:0005758: mitochondrial intermembrane space1.12E-03
23GO:0070469: respiratory chain1.23E-03
24GO:0005794: Golgi apparatus1.24E-03
25GO:0005775: vacuolar lumen1.29E-03
26GO:0033180: proton-transporting V-type ATPase, V1 domain1.29E-03
27GO:0005968: Rab-protein geranylgeranyltransferase complex1.29E-03
28GO:0031410: cytoplasmic vesicle1.48E-03
29GO:0031966: mitochondrial membrane1.57E-03
30GO:0005886: plasma membrane1.61E-03
31GO:0033179: proton-transporting V-type ATPase, V0 domain1.73E-03
32GO:0005776: autophagosome1.73E-03
33GO:0008250: oligosaccharyltransferase complex2.21E-03
34GO:0055035: plastid thylakoid membrane2.21E-03
35GO:0016020: membrane2.28E-03
36GO:0030904: retromer complex2.72E-03
37GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)2.72E-03
38GO:0005771: multivesicular body2.72E-03
39GO:0032580: Golgi cisterna membrane3.29E-03
40GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane3.86E-03
41GO:0005777: peroxisome3.91E-03
42GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)4.48E-03
43GO:0009514: glyoxysome5.13E-03
44GO:0008180: COP9 signalosome5.81E-03
45GO:0031090: organelle membrane5.81E-03
46GO:0030665: clathrin-coated vesicle membrane6.52E-03
47GO:0005740: mitochondrial envelope7.26E-03
48GO:0017119: Golgi transport complex7.26E-03
49GO:0031902: late endosome membrane7.70E-03
50GO:0005764: lysosome1.05E-02
51GO:0005739: mitochondrion1.82E-02
52GO:0005770: late endosome2.16E-02
53GO:0005789: endoplasmic reticulum membrane2.18E-02
54GO:0009705: plant-type vacuole membrane2.79E-02
55GO:0005737: cytoplasm2.84E-02
56GO:0022626: cytosolic ribosome3.92E-02
57GO:0009507: chloroplast4.88E-02
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Gene type



Gene DE type