GO Enrichment Analysis of Co-expressed Genes with
AT2G39250
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 3 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 4 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 5 | GO:0009715: chalcone biosynthetic process | 0.00E+00 |
| 6 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 7 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 8 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 9 | GO:0006114: glycerol biosynthetic process | 0.00E+00 |
| 10 | GO:0018298: protein-chromophore linkage | 1.46E-13 |
| 11 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.13E-12 |
| 12 | GO:0015979: photosynthesis | 1.79E-10 |
| 13 | GO:0010114: response to red light | 2.53E-07 |
| 14 | GO:0009645: response to low light intensity stimulus | 2.58E-07 |
| 15 | GO:0010196: nonphotochemical quenching | 2.58E-07 |
| 16 | GO:0010206: photosystem II repair | 8.45E-07 |
| 17 | GO:0090391: granum assembly | 1.64E-06 |
| 18 | GO:0010218: response to far red light | 3.94E-06 |
| 19 | GO:0009637: response to blue light | 5.34E-06 |
| 20 | GO:0006021: inositol biosynthetic process | 7.45E-06 |
| 21 | GO:0009644: response to high light intensity | 1.08E-05 |
| 22 | GO:0010236: plastoquinone biosynthetic process | 1.24E-05 |
| 23 | GO:0046855: inositol phosphate dephosphorylation | 1.89E-05 |
| 24 | GO:0009769: photosynthesis, light harvesting in photosystem II | 3.66E-05 |
| 25 | GO:0048564: photosystem I assembly | 4.79E-05 |
| 26 | GO:0009657: plastid organization | 6.09E-05 |
| 27 | GO:0010027: thylakoid membrane organization | 6.12E-05 |
| 28 | GO:1904966: positive regulation of vitamin E biosynthetic process | 8.96E-05 |
| 29 | GO:0000481: maturation of 5S rRNA | 8.96E-05 |
| 30 | GO:1904964: positive regulation of phytol biosynthetic process | 8.96E-05 |
| 31 | GO:0042371: vitamin K biosynthetic process | 8.96E-05 |
| 32 | GO:0010028: xanthophyll cycle | 8.96E-05 |
| 33 | GO:0034337: RNA folding | 8.96E-05 |
| 34 | GO:0071277: cellular response to calcium ion | 8.96E-05 |
| 35 | GO:0009443: pyridoxal 5'-phosphate salvage | 8.96E-05 |
| 36 | GO:0006790: sulfur compound metabolic process | 1.50E-04 |
| 37 | GO:0019253: reductive pentose-phosphate cycle | 1.97E-04 |
| 38 | GO:0010207: photosystem II assembly | 1.97E-04 |
| 39 | GO:0000256: allantoin catabolic process | 2.12E-04 |
| 40 | GO:0006729: tetrahydrobiopterin biosynthetic process | 2.12E-04 |
| 41 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.12E-04 |
| 42 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.12E-04 |
| 43 | GO:0009629: response to gravity | 2.12E-04 |
| 44 | GO:0046854: phosphatidylinositol phosphorylation | 2.22E-04 |
| 45 | GO:0009269: response to desiccation | 3.38E-04 |
| 46 | GO:0010136: ureide catabolic process | 3.54E-04 |
| 47 | GO:0006000: fructose metabolic process | 3.54E-04 |
| 48 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 5.10E-04 |
| 49 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 5.10E-04 |
| 50 | GO:0006020: inositol metabolic process | 5.10E-04 |
| 51 | GO:0071484: cellular response to light intensity | 5.10E-04 |
| 52 | GO:0006145: purine nucleobase catabolic process | 5.10E-04 |
| 53 | GO:0042823: pyridoxal phosphate biosynthetic process | 5.10E-04 |
| 54 | GO:0009765: photosynthesis, light harvesting | 6.78E-04 |
| 55 | GO:0015994: chlorophyll metabolic process | 6.78E-04 |
| 56 | GO:0006546: glycine catabolic process | 6.78E-04 |
| 57 | GO:0050665: hydrogen peroxide biosynthetic process | 1.05E-03 |
| 58 | GO:0009735: response to cytokinin | 1.12E-03 |
| 59 | GO:0016311: dephosphorylation | 1.18E-03 |
| 60 | GO:0010189: vitamin E biosynthetic process | 1.25E-03 |
| 61 | GO:0009854: oxidative photosynthetic carbon pathway | 1.25E-03 |
| 62 | GO:0071470: cellular response to osmotic stress | 1.25E-03 |
| 63 | GO:0042372: phylloquinone biosynthetic process | 1.25E-03 |
| 64 | GO:0009409: response to cold | 1.39E-03 |
| 65 | GO:0009772: photosynthetic electron transport in photosystem II | 1.46E-03 |
| 66 | GO:0009704: de-etiolation | 1.69E-03 |
| 67 | GO:0032508: DNA duplex unwinding | 1.69E-03 |
| 68 | GO:0031540: regulation of anthocyanin biosynthetic process | 1.69E-03 |
| 69 | GO:0016559: peroxisome fission | 1.69E-03 |
| 70 | GO:0009642: response to light intensity | 1.69E-03 |
| 71 | GO:0032544: plastid translation | 1.93E-03 |
| 72 | GO:0017004: cytochrome complex assembly | 1.93E-03 |
| 73 | GO:0006002: fructose 6-phosphate metabolic process | 1.93E-03 |
| 74 | GO:0090333: regulation of stomatal closure | 2.18E-03 |
| 75 | GO:0098656: anion transmembrane transport | 2.18E-03 |
| 76 | GO:0009245: lipid A biosynthetic process | 2.18E-03 |
| 77 | GO:0009773: photosynthetic electron transport in photosystem I | 2.98E-03 |
| 78 | GO:0006415: translational termination | 2.98E-03 |
| 79 | GO:0006006: glucose metabolic process | 3.56E-03 |
| 80 | GO:0009793: embryo development ending in seed dormancy | 3.56E-03 |
| 81 | GO:0006094: gluconeogenesis | 3.56E-03 |
| 82 | GO:0005986: sucrose biosynthetic process | 3.56E-03 |
| 83 | GO:0010020: chloroplast fission | 3.86E-03 |
| 84 | GO:0006396: RNA processing | 3.90E-03 |
| 85 | GO:0019853: L-ascorbic acid biosynthetic process | 4.18E-03 |
| 86 | GO:0006413: translational initiation | 6.08E-03 |
| 87 | GO:0007623: circadian rhythm | 6.52E-03 |
| 88 | GO:0009561: megagametogenesis | 6.61E-03 |
| 89 | GO:0009416: response to light stimulus | 6.66E-03 |
| 90 | GO:0042335: cuticle development | 7.37E-03 |
| 91 | GO:0019252: starch biosynthetic process | 8.58E-03 |
| 92 | GO:0080167: response to karrikin | 1.25E-02 |
| 93 | GO:0009627: systemic acquired resistance | 1.26E-02 |
| 94 | GO:0015995: chlorophyll biosynthetic process | 1.31E-02 |
| 95 | GO:0009817: defense response to fungus, incompatible interaction | 1.41E-02 |
| 96 | GO:0009813: flavonoid biosynthetic process | 1.46E-02 |
| 97 | GO:0009407: toxin catabolic process | 1.51E-02 |
| 98 | GO:0007568: aging | 1.56E-02 |
| 99 | GO:0016051: carbohydrate biosynthetic process | 1.66E-02 |
| 100 | GO:0009853: photorespiration | 1.66E-02 |
| 101 | GO:0034599: cellular response to oxidative stress | 1.72E-02 |
| 102 | GO:0032259: methylation | 1.78E-02 |
| 103 | GO:0009926: auxin polar transport | 1.99E-02 |
| 104 | GO:0009636: response to toxic substance | 2.16E-02 |
| 105 | GO:0006855: drug transmembrane transport | 2.22E-02 |
| 106 | GO:0010224: response to UV-B | 2.52E-02 |
| 107 | GO:0006417: regulation of translation | 2.65E-02 |
| 108 | GO:0006096: glycolytic process | 2.77E-02 |
| 109 | GO:0055085: transmembrane transport | 4.17E-02 |
| 110 | GO:0009737: response to abscisic acid | 4.19E-02 |
| 111 | GO:0006633: fatty acid biosynthetic process | 4.36E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 2 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 3 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 4 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 5 | GO:0043136: glycerol-3-phosphatase activity | 0.00E+00 |
| 6 | GO:0000121: glycerol-1-phosphatase activity | 0.00E+00 |
| 7 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 8 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 9 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 10 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 11 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 12 | GO:0016210: naringenin-chalcone synthase activity | 0.00E+00 |
| 13 | GO:0016168: chlorophyll binding | 5.70E-14 |
| 14 | GO:0031409: pigment binding | 3.41E-12 |
| 15 | GO:0052832: inositol monophosphate 3-phosphatase activity | 4.31E-07 |
| 16 | GO:0008934: inositol monophosphate 1-phosphatase activity | 4.31E-07 |
| 17 | GO:0052833: inositol monophosphate 4-phosphatase activity | 4.31E-07 |
| 18 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.69E-05 |
| 19 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 8.96E-05 |
| 20 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 8.96E-05 |
| 21 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 8.96E-05 |
| 22 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 8.96E-05 |
| 23 | GO:0031072: heat shock protein binding | 1.73E-04 |
| 24 | GO:0047746: chlorophyllase activity | 2.12E-04 |
| 25 | GO:0004047: aminomethyltransferase activity | 2.12E-04 |
| 26 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.12E-04 |
| 27 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 2.12E-04 |
| 28 | GO:0070402: NADPH binding | 3.54E-04 |
| 29 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 3.54E-04 |
| 30 | GO:0022891: substrate-specific transmembrane transporter activity | 4.04E-04 |
| 31 | GO:0004792: thiosulfate sulfurtransferase activity | 5.10E-04 |
| 32 | GO:0016149: translation release factor activity, codon specific | 5.10E-04 |
| 33 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 5.10E-04 |
| 34 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 5.10E-04 |
| 35 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 5.10E-04 |
| 36 | GO:0008891: glycolate oxidase activity | 6.78E-04 |
| 37 | GO:0004659: prenyltransferase activity | 6.78E-04 |
| 38 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 6.78E-04 |
| 39 | GO:0008453: alanine-glyoxylate transaminase activity | 6.78E-04 |
| 40 | GO:0043495: protein anchor | 6.78E-04 |
| 41 | GO:0042578: phosphoric ester hydrolase activity | 1.05E-03 |
| 42 | GO:0031177: phosphopantetheine binding | 1.05E-03 |
| 43 | GO:0046872: metal ion binding | 1.15E-03 |
| 44 | GO:0000035: acyl binding | 1.25E-03 |
| 45 | GO:0019899: enzyme binding | 1.46E-03 |
| 46 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 1.69E-03 |
| 47 | GO:0004033: aldo-keto reductase (NADP) activity | 1.69E-03 |
| 48 | GO:0003747: translation release factor activity | 2.18E-03 |
| 49 | GO:0005315: inorganic phosphate transmembrane transporter activity | 3.56E-03 |
| 50 | GO:0051082: unfolded protein binding | 3.79E-03 |
| 51 | GO:0019843: rRNA binding | 4.73E-03 |
| 52 | GO:0005528: FK506 binding | 4.83E-03 |
| 53 | GO:0003727: single-stranded RNA binding | 6.61E-03 |
| 54 | GO:0008514: organic anion transmembrane transporter activity | 6.61E-03 |
| 55 | GO:0003756: protein disulfide isomerase activity | 6.61E-03 |
| 56 | GO:0003743: translation initiation factor activity | 7.62E-03 |
| 57 | GO:0016853: isomerase activity | 8.17E-03 |
| 58 | GO:0010181: FMN binding | 8.17E-03 |
| 59 | GO:0042802: identical protein binding | 8.29E-03 |
| 60 | GO:0048038: quinone binding | 8.99E-03 |
| 61 | GO:0008483: transaminase activity | 1.07E-02 |
| 62 | GO:0016787: hydrolase activity | 1.18E-02 |
| 63 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.36E-02 |
| 64 | GO:0015238: drug transmembrane transporter activity | 1.46E-02 |
| 65 | GO:0003746: translation elongation factor activity | 1.66E-02 |
| 66 | GO:0003993: acid phosphatase activity | 1.72E-02 |
| 67 | GO:0050661: NADP binding | 1.82E-02 |
| 68 | GO:0003924: GTPase activity | 1.86E-02 |
| 69 | GO:0004364: glutathione transferase activity | 1.93E-02 |
| 70 | GO:0043621: protein self-association | 2.10E-02 |
| 71 | GO:0005198: structural molecule activity | 2.16E-02 |
| 72 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.22E-02 |
| 73 | GO:0051287: NAD binding | 2.28E-02 |
| 74 | GO:0016491: oxidoreductase activity | 2.31E-02 |
| 75 | GO:0003729: mRNA binding | 2.69E-02 |
| 76 | GO:0015297: antiporter activity | 4.51E-02 |
| 77 | GO:0008017: microtubule binding | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 3.52E-43 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 4.37E-38 |
| 4 | GO:0009534: chloroplast thylakoid | 2.70E-23 |
| 5 | GO:0009941: chloroplast envelope | 3.00E-20 |
| 6 | GO:0009579: thylakoid | 1.68E-18 |
| 7 | GO:0009570: chloroplast stroma | 4.51E-15 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 5.34E-11 |
| 9 | GO:0010287: plastoglobule | 1.92E-09 |
| 10 | GO:0009522: photosystem I | 7.21E-09 |
| 11 | GO:0009523: photosystem II | 8.84E-09 |
| 12 | GO:0030076: light-harvesting complex | 5.43E-08 |
| 13 | GO:0031977: thylakoid lumen | 2.02E-07 |
| 14 | GO:0009517: PSII associated light-harvesting complex II | 7.45E-06 |
| 15 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 7.55E-05 |
| 16 | GO:0009782: photosystem I antenna complex | 8.96E-05 |
| 17 | GO:0009783: photosystem II antenna complex | 8.96E-05 |
| 18 | GO:0030095: chloroplast photosystem II | 1.97E-04 |
| 19 | GO:0009654: photosystem II oxygen evolving complex | 3.07E-04 |
| 20 | GO:0019898: extrinsic component of membrane | 6.33E-04 |
| 21 | GO:0016021: integral component of membrane | 8.38E-04 |
| 22 | GO:0009538: photosystem I reaction center | 1.69E-03 |
| 23 | GO:0031969: chloroplast membrane | 1.97E-03 |
| 24 | GO:0032040: small-subunit processome | 3.26E-03 |
| 25 | GO:0016020: membrane | 3.69E-03 |
| 26 | GO:0009706: chloroplast inner membrane | 3.79E-03 |
| 27 | GO:0042651: thylakoid membrane | 5.17E-03 |
| 28 | GO:0022626: cytosolic ribosome | 6.30E-03 |
| 29 | GO:0048046: apoplast | 7.84E-03 |
| 30 | GO:0005777: peroxisome | 7.94E-03 |
| 31 | GO:0009707: chloroplast outer membrane | 1.41E-02 |
| 32 | GO:0015934: large ribosomal subunit | 1.56E-02 |
| 33 | GO:0005840: ribosome | 1.73E-02 |
| 34 | GO:0005759: mitochondrial matrix | 4.36E-02 |
| 35 | GO:0009705: plant-type vacuole membrane | 4.67E-02 |