GO Enrichment Analysis of Co-expressed Genes with
AT2G38780
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 3 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 4 | GO:0071482: cellular response to light stimulus | 2.72E-05 |
| 5 | GO:0009657: plastid organization | 2.72E-05 |
| 6 | GO:1904966: positive regulation of vitamin E biosynthetic process | 5.34E-05 |
| 7 | GO:1904964: positive regulation of phytol biosynthetic process | 5.34E-05 |
| 8 | GO:0006436: tryptophanyl-tRNA aminoacylation | 5.34E-05 |
| 9 | GO:0006419: alanyl-tRNA aminoacylation | 5.34E-05 |
| 10 | GO:0019646: aerobic electron transport chain | 5.34E-05 |
| 11 | GO:0080005: photosystem stoichiometry adjustment | 1.30E-04 |
| 12 | GO:0000256: allantoin catabolic process | 1.30E-04 |
| 13 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.30E-04 |
| 14 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.30E-04 |
| 15 | GO:0034755: iron ion transmembrane transport | 1.30E-04 |
| 16 | GO:0010136: ureide catabolic process | 2.22E-04 |
| 17 | GO:0051604: protein maturation | 2.22E-04 |
| 18 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 3.25E-04 |
| 19 | GO:0009226: nucleotide-sugar biosynthetic process | 3.25E-04 |
| 20 | GO:2001141: regulation of RNA biosynthetic process | 3.25E-04 |
| 21 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.25E-04 |
| 22 | GO:0006145: purine nucleobase catabolic process | 3.25E-04 |
| 23 | GO:0006021: inositol biosynthetic process | 4.35E-04 |
| 24 | GO:0009765: photosynthesis, light harvesting | 4.35E-04 |
| 25 | GO:0016123: xanthophyll biosynthetic process | 5.52E-04 |
| 26 | GO:0016120: carotene biosynthetic process | 5.52E-04 |
| 27 | GO:0018298: protein-chromophore linkage | 6.46E-04 |
| 28 | GO:0006655: phosphatidylglycerol biosynthetic process | 6.76E-04 |
| 29 | GO:0042549: photosystem II stabilization | 6.76E-04 |
| 30 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 6.76E-04 |
| 31 | GO:0046855: inositol phosphate dephosphorylation | 6.76E-04 |
| 32 | GO:0042372: phylloquinone biosynthetic process | 8.05E-04 |
| 33 | GO:0010189: vitamin E biosynthetic process | 8.05E-04 |
| 34 | GO:0009645: response to low light intensity stimulus | 9.40E-04 |
| 35 | GO:0006400: tRNA modification | 9.40E-04 |
| 36 | GO:0015979: photosynthesis | 9.86E-04 |
| 37 | GO:0010114: response to red light | 1.03E-03 |
| 38 | GO:0048564: photosystem I assembly | 1.08E-03 |
| 39 | GO:0017004: cytochrome complex assembly | 1.23E-03 |
| 40 | GO:0005982: starch metabolic process | 1.54E-03 |
| 41 | GO:0006879: cellular iron ion homeostasis | 1.88E-03 |
| 42 | GO:0006352: DNA-templated transcription, initiation | 1.88E-03 |
| 43 | GO:0006415: translational termination | 1.88E-03 |
| 44 | GO:0006396: RNA processing | 1.99E-03 |
| 45 | GO:0006790: sulfur compound metabolic process | 2.06E-03 |
| 46 | GO:0016024: CDP-diacylglycerol biosynthetic process | 2.06E-03 |
| 47 | GO:0006094: gluconeogenesis | 2.25E-03 |
| 48 | GO:2000012: regulation of auxin polar transport | 2.25E-03 |
| 49 | GO:0010207: photosystem II assembly | 2.43E-03 |
| 50 | GO:0019853: L-ascorbic acid biosynthetic process | 2.63E-03 |
| 51 | GO:0046854: phosphatidylinositol phosphorylation | 2.63E-03 |
| 52 | GO:0006413: translational initiation | 3.08E-03 |
| 53 | GO:0009768: photosynthesis, light harvesting in photosystem I | 3.24E-03 |
| 54 | GO:0008299: isoprenoid biosynthetic process | 3.24E-03 |
| 55 | GO:0006418: tRNA aminoacylation for protein translation | 3.24E-03 |
| 56 | GO:0003333: amino acid transmembrane transport | 3.46E-03 |
| 57 | GO:0016117: carotenoid biosynthetic process | 4.36E-03 |
| 58 | GO:0000413: protein peptidyl-prolyl isomerization | 4.60E-03 |
| 59 | GO:0009793: embryo development ending in seed dormancy | 4.65E-03 |
| 60 | GO:0009658: chloroplast organization | 5.09E-03 |
| 61 | GO:0008654: phospholipid biosynthetic process | 5.34E-03 |
| 62 | GO:0010027: thylakoid membrane organization | 7.22E-03 |
| 63 | GO:0009911: positive regulation of flower development | 7.22E-03 |
| 64 | GO:0042128: nitrate assimilation | 7.79E-03 |
| 65 | GO:0048481: plant ovule development | 8.68E-03 |
| 66 | GO:0009817: defense response to fungus, incompatible interaction | 8.68E-03 |
| 67 | GO:0007568: aging | 9.61E-03 |
| 68 | GO:0006397: mRNA processing | 9.71E-03 |
| 69 | GO:0009637: response to blue light | 1.02E-02 |
| 70 | GO:0009644: response to high light intensity | 1.30E-02 |
| 71 | GO:0055114: oxidation-reduction process | 1.36E-02 |
| 72 | GO:0006364: rRNA processing | 1.51E-02 |
| 73 | GO:0006417: regulation of translation | 1.63E-02 |
| 74 | GO:0006096: glycolytic process | 1.70E-02 |
| 75 | GO:0055085: transmembrane transport | 2.11E-02 |
| 76 | GO:0006457: protein folding | 2.15E-02 |
| 77 | GO:0006508: proteolysis | 2.81E-02 |
| 78 | GO:0008380: RNA splicing | 3.25E-02 |
| 79 | GO:0010468: regulation of gene expression | 3.25E-02 |
| 80 | GO:0042254: ribosome biogenesis | 3.96E-02 |
| 81 | GO:0009409: response to cold | 4.53E-02 |
| 82 | GO:0080167: response to karrikin | 4.56E-02 |
| 83 | GO:0046777: protein autophosphorylation | 4.78E-02 |
| 84 | GO:0006810: transport | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010276: phytol kinase activity | 0.00E+00 |
| 2 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 3 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 4 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 5 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 6 | GO:0004830: tryptophan-tRNA ligase activity | 5.34E-05 |
| 7 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 5.34E-05 |
| 8 | GO:0004347: glucose-6-phosphate isomerase activity | 5.34E-05 |
| 9 | GO:0004813: alanine-tRNA ligase activity | 5.34E-05 |
| 10 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.30E-04 |
| 11 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.30E-04 |
| 12 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.30E-04 |
| 13 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 2.22E-04 |
| 14 | GO:0004751: ribose-5-phosphate isomerase activity | 2.22E-04 |
| 15 | GO:0004096: catalase activity | 2.22E-04 |
| 16 | GO:0070402: NADPH binding | 2.22E-04 |
| 17 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.22E-04 |
| 18 | GO:0016149: translation release factor activity, codon specific | 3.25E-04 |
| 19 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 4.35E-04 |
| 20 | GO:0001053: plastid sigma factor activity | 4.35E-04 |
| 21 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 4.35E-04 |
| 22 | GO:0004045: aminoacyl-tRNA hydrolase activity | 4.35E-04 |
| 23 | GO:0016987: sigma factor activity | 4.35E-04 |
| 24 | GO:0043495: protein anchor | 4.35E-04 |
| 25 | GO:0016168: chlorophyll binding | 5.28E-04 |
| 26 | GO:0004605: phosphatidate cytidylyltransferase activity | 6.76E-04 |
| 27 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 8.05E-04 |
| 28 | GO:0008233: peptidase activity | 8.21E-04 |
| 29 | GO:0019899: enzyme binding | 9.40E-04 |
| 30 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.19E-03 |
| 31 | GO:0003747: translation release factor activity | 1.38E-03 |
| 32 | GO:0005381: iron ion transmembrane transporter activity | 1.54E-03 |
| 33 | GO:0015174: basic amino acid transmembrane transporter activity | 1.54E-03 |
| 34 | GO:0000049: tRNA binding | 2.06E-03 |
| 35 | GO:0031409: pigment binding | 2.83E-03 |
| 36 | GO:0003954: NADH dehydrogenase activity | 3.03E-03 |
| 37 | GO:0005528: FK506 binding | 3.03E-03 |
| 38 | GO:0043424: protein histidine kinase binding | 3.24E-03 |
| 39 | GO:0004176: ATP-dependent peptidase activity | 3.46E-03 |
| 40 | GO:0003743: translation initiation factor activity | 3.85E-03 |
| 41 | GO:0022891: substrate-specific transmembrane transporter activity | 3.90E-03 |
| 42 | GO:0003727: single-stranded RNA binding | 4.13E-03 |
| 43 | GO:0004812: aminoacyl-tRNA ligase activity | 4.36E-03 |
| 44 | GO:0008080: N-acetyltransferase activity | 4.84E-03 |
| 45 | GO:0016853: isomerase activity | 5.09E-03 |
| 46 | GO:0048038: quinone binding | 5.60E-03 |
| 47 | GO:0016597: amino acid binding | 6.94E-03 |
| 48 | GO:0008236: serine-type peptidase activity | 8.38E-03 |
| 49 | GO:0050897: cobalt ion binding | 9.61E-03 |
| 50 | GO:0030145: manganese ion binding | 9.61E-03 |
| 51 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.30E-02 |
| 52 | GO:0043621: protein self-association | 1.30E-02 |
| 53 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.51E-02 |
| 54 | GO:0015171: amino acid transmembrane transporter activity | 1.63E-02 |
| 55 | GO:0016746: transferase activity, transferring acyl groups | 1.98E-02 |
| 56 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.32E-02 |
| 57 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 3.40E-02 |
| 58 | GO:0042802: identical protein binding | 3.40E-02 |
| 59 | GO:0016788: hydrolase activity, acting on ester bonds | 3.96E-02 |
| 60 | GO:0050660: flavin adenine dinucleotide binding | 4.34E-02 |
| 61 | GO:0046872: metal ion binding | 4.84E-02 |
| 62 | GO:0052689: carboxylic ester hydrolase activity | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 4.05E-25 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 5.05E-11 |
| 3 | GO:0009941: chloroplast envelope | 3.30E-09 |
| 4 | GO:0009570: chloroplast stroma | 2.28E-07 |
| 5 | GO:0009534: chloroplast thylakoid | 6.77E-06 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 1.37E-05 |
| 7 | GO:0009782: photosystem I antenna complex | 5.34E-05 |
| 8 | GO:0031977: thylakoid lumen | 6.08E-05 |
| 9 | GO:0031969: chloroplast membrane | 9.02E-05 |
| 10 | GO:0031304: intrinsic component of mitochondrial inner membrane | 1.30E-04 |
| 11 | GO:0009523: photosystem II | 3.25E-04 |
| 12 | GO:0009526: plastid envelope | 4.35E-04 |
| 13 | GO:0055035: plastid thylakoid membrane | 5.52E-04 |
| 14 | GO:0009533: chloroplast stromal thylakoid | 9.40E-04 |
| 15 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.38E-03 |
| 16 | GO:0090404: pollen tube tip | 1.88E-03 |
| 17 | GO:0009508: plastid chromosome | 2.25E-03 |
| 18 | GO:0010287: plastoglobule | 2.28E-03 |
| 19 | GO:0030076: light-harvesting complex | 2.63E-03 |
| 20 | GO:0042651: thylakoid membrane | 3.24E-03 |
| 21 | GO:0009654: photosystem II oxygen evolving complex | 3.24E-03 |
| 22 | GO:0019898: extrinsic component of membrane | 5.34E-03 |
| 23 | GO:0009295: nucleoid | 6.66E-03 |
| 24 | GO:0030529: intracellular ribonucleoprotein complex | 7.22E-03 |
| 25 | GO:0009707: chloroplast outer membrane | 8.68E-03 |
| 26 | GO:0009536: plastid | 8.81E-03 |
| 27 | GO:0031966: mitochondrial membrane | 1.44E-02 |
| 28 | GO:0005635: nuclear envelope | 1.59E-02 |
| 29 | GO:0005747: mitochondrial respiratory chain complex I | 1.74E-02 |
| 30 | GO:0009579: thylakoid | 1.98E-02 |
| 31 | GO:0005759: mitochondrial matrix | 2.68E-02 |
| 32 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 4.18E-02 |