GO Enrichment Analysis of Co-expressed Genes with
AT2G38695
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090279: regulation of calcium ion import | 0.00E+00 |
| 2 | GO:0071474: cellular hyperosmotic response | 0.00E+00 |
| 3 | GO:1905421: regulation of plant organ morphogenesis | 0.00E+00 |
| 4 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 5 | GO:0030155: regulation of cell adhesion | 0.00E+00 |
| 6 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 7 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 8 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 9 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 10 | GO:0032544: plastid translation | 6.62E-12 |
| 11 | GO:0015979: photosynthesis | 1.12E-10 |
| 12 | GO:0006412: translation | 5.34E-09 |
| 13 | GO:0009773: photosynthetic electron transport in photosystem I | 9.74E-09 |
| 14 | GO:0042254: ribosome biogenesis | 1.28E-06 |
| 15 | GO:0010027: thylakoid membrane organization | 3.03E-06 |
| 16 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 4.22E-06 |
| 17 | GO:0061077: chaperone-mediated protein folding | 6.41E-06 |
| 18 | GO:0009735: response to cytokinin | 8.00E-06 |
| 19 | GO:0009658: chloroplast organization | 1.35E-05 |
| 20 | GO:0006000: fructose metabolic process | 1.50E-05 |
| 21 | GO:0009409: response to cold | 1.66E-05 |
| 22 | GO:0005983: starch catabolic process | 4.59E-05 |
| 23 | GO:0006094: gluconeogenesis | 5.64E-05 |
| 24 | GO:0010021: amylopectin biosynthetic process | 6.01E-05 |
| 25 | GO:0019464: glycine decarboxylation via glycine cleavage system | 6.01E-05 |
| 26 | GO:0015995: chlorophyll biosynthetic process | 8.16E-05 |
| 27 | GO:0010190: cytochrome b6f complex assembly | 1.37E-04 |
| 28 | GO:0080093: regulation of photorespiration | 3.04E-04 |
| 29 | GO:0043007: maintenance of rDNA | 3.04E-04 |
| 30 | GO:0031998: regulation of fatty acid beta-oxidation | 3.04E-04 |
| 31 | GO:0010028: xanthophyll cycle | 3.04E-04 |
| 32 | GO:0000023: maltose metabolic process | 3.04E-04 |
| 33 | GO:0000025: maltose catabolic process | 3.04E-04 |
| 34 | GO:0005980: glycogen catabolic process | 3.04E-04 |
| 35 | GO:0006002: fructose 6-phosphate metabolic process | 3.80E-04 |
| 36 | GO:0006782: protoporphyrinogen IX biosynthetic process | 6.31E-04 |
| 37 | GO:0005976: polysaccharide metabolic process | 6.66E-04 |
| 38 | GO:0016122: xanthophyll metabolic process | 6.66E-04 |
| 39 | GO:0051262: protein tetramerization | 6.66E-04 |
| 40 | GO:0005986: sucrose biosynthetic process | 9.40E-04 |
| 41 | GO:0009266: response to temperature stimulus | 1.06E-03 |
| 42 | GO:0006518: peptide metabolic process | 1.08E-03 |
| 43 | GO:0080055: low-affinity nitrate transport | 1.08E-03 |
| 44 | GO:0016050: vesicle organization | 1.08E-03 |
| 45 | GO:0048281: inflorescence morphogenesis | 1.08E-03 |
| 46 | GO:0010731: protein glutathionylation | 1.55E-03 |
| 47 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.55E-03 |
| 48 | GO:0006241: CTP biosynthetic process | 1.55E-03 |
| 49 | GO:0006165: nucleoside diphosphate phosphorylation | 1.55E-03 |
| 50 | GO:0006228: UTP biosynthetic process | 1.55E-03 |
| 51 | GO:0010148: transpiration | 1.55E-03 |
| 52 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.60E-03 |
| 53 | GO:0006546: glycine catabolic process | 2.07E-03 |
| 54 | GO:0006808: regulation of nitrogen utilization | 2.07E-03 |
| 55 | GO:0009765: photosynthesis, light harvesting | 2.07E-03 |
| 56 | GO:0006109: regulation of carbohydrate metabolic process | 2.07E-03 |
| 57 | GO:0006183: GTP biosynthetic process | 2.07E-03 |
| 58 | GO:0045727: positive regulation of translation | 2.07E-03 |
| 59 | GO:0015994: chlorophyll metabolic process | 2.07E-03 |
| 60 | GO:0006097: glyoxylate cycle | 2.65E-03 |
| 61 | GO:0006461: protein complex assembly | 2.65E-03 |
| 62 | GO:0042549: photosystem II stabilization | 3.27E-03 |
| 63 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 3.27E-03 |
| 64 | GO:0000470: maturation of LSU-rRNA | 3.27E-03 |
| 65 | GO:0019252: starch biosynthetic process | 3.31E-03 |
| 66 | GO:0006810: transport | 3.88E-03 |
| 67 | GO:1901259: chloroplast rRNA processing | 3.93E-03 |
| 68 | GO:0006458: 'de novo' protein folding | 3.93E-03 |
| 69 | GO:0009955: adaxial/abaxial pattern specification | 3.93E-03 |
| 70 | GO:0042026: protein refolding | 3.93E-03 |
| 71 | GO:0070370: cellular heat acclimation | 4.64E-03 |
| 72 | GO:0009645: response to low light intensity stimulus | 4.64E-03 |
| 73 | GO:0010103: stomatal complex morphogenesis | 4.64E-03 |
| 74 | GO:0010196: nonphotochemical quenching | 4.64E-03 |
| 75 | GO:0045454: cell redox homeostasis | 5.34E-03 |
| 76 | GO:0006353: DNA-templated transcription, termination | 5.39E-03 |
| 77 | GO:0000105: histidine biosynthetic process | 5.39E-03 |
| 78 | GO:0005978: glycogen biosynthetic process | 5.39E-03 |
| 79 | GO:0009790: embryo development | 6.15E-03 |
| 80 | GO:0017004: cytochrome complex assembly | 6.18E-03 |
| 81 | GO:0001558: regulation of cell growth | 6.18E-03 |
| 82 | GO:0009657: plastid organization | 6.18E-03 |
| 83 | GO:0018298: protein-chromophore linkage | 6.69E-03 |
| 84 | GO:0010206: photosystem II repair | 7.01E-03 |
| 85 | GO:0006783: heme biosynthetic process | 7.01E-03 |
| 86 | GO:0010218: response to far red light | 7.38E-03 |
| 87 | GO:0009631: cold acclimation | 7.74E-03 |
| 88 | GO:0005982: starch metabolic process | 7.87E-03 |
| 89 | GO:0006779: porphyrin-containing compound biosynthetic process | 7.87E-03 |
| 90 | GO:0042761: very long-chain fatty acid biosynthetic process | 7.87E-03 |
| 91 | GO:0009637: response to blue light | 8.49E-03 |
| 92 | GO:0031627: telomeric loop formation | 8.77E-03 |
| 93 | GO:0034599: cellular response to oxidative stress | 8.87E-03 |
| 94 | GO:0009089: lysine biosynthetic process via diaminopimelate | 9.71E-03 |
| 95 | GO:0006415: translational termination | 9.71E-03 |
| 96 | GO:0009073: aromatic amino acid family biosynthetic process | 9.71E-03 |
| 97 | GO:0043085: positive regulation of catalytic activity | 9.71E-03 |
| 98 | GO:0000272: polysaccharide catabolic process | 9.71E-03 |
| 99 | GO:0009750: response to fructose | 9.71E-03 |
| 100 | GO:0018119: peptidyl-cysteine S-nitrosylation | 9.71E-03 |
| 101 | GO:0019684: photosynthesis, light reaction | 9.71E-03 |
| 102 | GO:0006631: fatty acid metabolic process | 1.01E-02 |
| 103 | GO:0045037: protein import into chloroplast stroma | 1.07E-02 |
| 104 | GO:0010114: response to red light | 1.10E-02 |
| 105 | GO:0006108: malate metabolic process | 1.17E-02 |
| 106 | GO:0010102: lateral root morphogenesis | 1.17E-02 |
| 107 | GO:0005975: carbohydrate metabolic process | 1.22E-02 |
| 108 | GO:0019253: reductive pentose-phosphate cycle | 1.27E-02 |
| 109 | GO:0010020: chloroplast fission | 1.27E-02 |
| 110 | GO:0005985: sucrose metabolic process | 1.38E-02 |
| 111 | GO:0006364: rRNA processing | 1.48E-02 |
| 112 | GO:0010025: wax biosynthetic process | 1.49E-02 |
| 113 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.49E-02 |
| 114 | GO:0000162: tryptophan biosynthetic process | 1.49E-02 |
| 115 | GO:0006289: nucleotide-excision repair | 1.60E-02 |
| 116 | GO:0000027: ribosomal large subunit assembly | 1.60E-02 |
| 117 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.60E-02 |
| 118 | GO:0051302: regulation of cell division | 1.72E-02 |
| 119 | GO:0016575: histone deacetylation | 1.72E-02 |
| 120 | GO:0007017: microtubule-based process | 1.72E-02 |
| 121 | GO:0080167: response to karrikin | 1.75E-02 |
| 122 | GO:0006096: glycolytic process | 1.75E-02 |
| 123 | GO:0043086: negative regulation of catalytic activity | 1.75E-02 |
| 124 | GO:0019915: lipid storage | 1.84E-02 |
| 125 | GO:0009411: response to UV | 2.09E-02 |
| 126 | GO:0001944: vasculature development | 2.09E-02 |
| 127 | GO:0009686: gibberellin biosynthetic process | 2.09E-02 |
| 128 | GO:0006284: base-excision repair | 2.22E-02 |
| 129 | GO:0042631: cellular response to water deprivation | 2.48E-02 |
| 130 | GO:0006662: glycerol ether metabolic process | 2.62E-02 |
| 131 | GO:0000302: response to reactive oxygen species | 3.04E-02 |
| 132 | GO:1901657: glycosyl compound metabolic process | 3.33E-02 |
| 133 | GO:0009607: response to biotic stimulus | 4.11E-02 |
| 134 | GO:0016311: dephosphorylation | 4.60E-02 |
| 135 | GO:0009414: response to water deprivation | 4.73E-02 |
| 136 | GO:0009817: defense response to fungus, incompatible interaction | 4.77E-02 |
| 137 | GO:0042742: defense response to bacterium | 4.90E-02 |
| 138 | GO:0009813: flavonoid biosynthetic process | 4.94E-02 |
| 139 | GO:0006979: response to oxidative stress | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 2 | GO:0009899: ent-kaurene synthase activity | 0.00E+00 |
| 3 | GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity | 0.00E+00 |
| 4 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 5 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 6 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 7 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 8 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 9 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 10 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 11 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 12 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 13 | GO:0019843: rRNA binding | 3.09E-18 |
| 14 | GO:0003735: structural constituent of ribosome | 1.39E-11 |
| 15 | GO:0005528: FK506 binding | 1.30E-09 |
| 16 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.84E-06 |
| 17 | GO:0010297: heteropolysaccharide binding | 4.22E-06 |
| 18 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 4.22E-06 |
| 19 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 3.35E-05 |
| 20 | GO:2001070: starch binding | 1.37E-04 |
| 21 | GO:0004134: 4-alpha-glucanotransferase activity | 3.04E-04 |
| 22 | GO:0004645: phosphorylase activity | 3.04E-04 |
| 23 | GO:0019203: carbohydrate phosphatase activity | 3.04E-04 |
| 24 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 3.04E-04 |
| 25 | GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | 3.04E-04 |
| 26 | GO:0005227: calcium activated cation channel activity | 3.04E-04 |
| 27 | GO:0008184: glycogen phosphorylase activity | 3.04E-04 |
| 28 | GO:0050308: sugar-phosphatase activity | 3.04E-04 |
| 29 | GO:0004856: xylulokinase activity | 3.04E-04 |
| 30 | GO:0004853: uroporphyrinogen decarboxylase activity | 3.04E-04 |
| 31 | GO:0008967: phosphoglycolate phosphatase activity | 6.66E-04 |
| 32 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 6.66E-04 |
| 33 | GO:0042389: omega-3 fatty acid desaturase activity | 6.66E-04 |
| 34 | GO:0016868: intramolecular transferase activity, phosphotransferases | 6.66E-04 |
| 35 | GO:0033201: alpha-1,4-glucan synthase activity | 6.66E-04 |
| 36 | GO:0018708: thiol S-methyltransferase activity | 6.66E-04 |
| 37 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 6.66E-04 |
| 38 | GO:0016168: chlorophyll binding | 6.89E-04 |
| 39 | GO:0044183: protein binding involved in protein folding | 7.28E-04 |
| 40 | GO:0004565: beta-galactosidase activity | 9.40E-04 |
| 41 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 1.08E-03 |
| 42 | GO:0080054: low-affinity nitrate transmembrane transporter activity | 1.08E-03 |
| 43 | GO:0043169: cation binding | 1.08E-03 |
| 44 | GO:0004373: glycogen (starch) synthase activity | 1.08E-03 |
| 45 | GO:0017150: tRNA dihydrouridine synthase activity | 1.08E-03 |
| 46 | GO:0005504: fatty acid binding | 1.08E-03 |
| 47 | GO:0031409: pigment binding | 1.31E-03 |
| 48 | GO:0004857: enzyme inhibitor activity | 1.45E-03 |
| 49 | GO:0016851: magnesium chelatase activity | 1.55E-03 |
| 50 | GO:0048487: beta-tubulin binding | 1.55E-03 |
| 51 | GO:0016149: translation release factor activity, codon specific | 1.55E-03 |
| 52 | GO:0004550: nucleoside diphosphate kinase activity | 1.55E-03 |
| 53 | GO:0043023: ribosomal large subunit binding | 1.55E-03 |
| 54 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 1.55E-03 |
| 55 | GO:0009011: starch synthase activity | 2.07E-03 |
| 56 | GO:0042277: peptide binding | 2.07E-03 |
| 57 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 2.07E-03 |
| 58 | GO:0019199: transmembrane receptor protein kinase activity | 2.07E-03 |
| 59 | GO:0045430: chalcone isomerase activity | 2.07E-03 |
| 60 | GO:0008725: DNA-3-methyladenine glycosylase activity | 2.65E-03 |
| 61 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.65E-03 |
| 62 | GO:0016615: malate dehydrogenase activity | 3.27E-03 |
| 63 | GO:0004332: fructose-bisphosphate aldolase activity | 3.27E-03 |
| 64 | GO:0004130: cytochrome-c peroxidase activity | 3.27E-03 |
| 65 | GO:0048038: quinone binding | 3.55E-03 |
| 66 | GO:0051082: unfolded protein binding | 3.79E-03 |
| 67 | GO:0051920: peroxiredoxin activity | 3.93E-03 |
| 68 | GO:0030060: L-malate dehydrogenase activity | 3.93E-03 |
| 69 | GO:0005261: cation channel activity | 3.93E-03 |
| 70 | GO:0016209: antioxidant activity | 5.39E-03 |
| 71 | GO:0004033: aldo-keto reductase (NADP) activity | 5.39E-03 |
| 72 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 6.18E-03 |
| 73 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 6.18E-03 |
| 74 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 7.01E-03 |
| 75 | GO:0003747: translation release factor activity | 7.01E-03 |
| 76 | GO:0008047: enzyme activator activity | 8.77E-03 |
| 77 | GO:0047372: acylglycerol lipase activity | 9.71E-03 |
| 78 | GO:0003691: double-stranded telomeric DNA binding | 9.71E-03 |
| 79 | GO:0008378: galactosyltransferase activity | 1.07E-02 |
| 80 | GO:0031072: heat shock protein binding | 1.17E-02 |
| 81 | GO:0043621: protein self-association | 1.19E-02 |
| 82 | GO:0008266: poly(U) RNA binding | 1.27E-02 |
| 83 | GO:0000287: magnesium ion binding | 1.30E-02 |
| 84 | GO:0004407: histone deacetylase activity | 1.60E-02 |
| 85 | GO:0022891: substrate-specific transmembrane transporter activity | 2.09E-02 |
| 86 | GO:0015035: protein disulfide oxidoreductase activity | 2.18E-02 |
| 87 | GO:0003756: protein disulfide isomerase activity | 2.22E-02 |
| 88 | GO:0047134: protein-disulfide reductase activity | 2.35E-02 |
| 89 | GO:0050662: coenzyme binding | 2.76E-02 |
| 90 | GO:0004791: thioredoxin-disulfide reductase activity | 2.76E-02 |
| 91 | GO:0003924: GTPase activity | 2.85E-02 |
| 92 | GO:0030170: pyridoxal phosphate binding | 2.94E-02 |
| 93 | GO:0009055: electron carrier activity | 3.11E-02 |
| 94 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 3.33E-02 |
| 95 | GO:0005200: structural constituent of cytoskeleton | 3.64E-02 |
| 96 | GO:0008483: transaminase activity | 3.64E-02 |
| 97 | GO:0102483: scopolin beta-glucosidase activity | 4.44E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0042579: microbody | 0.00E+00 |
| 3 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 2.90E-69 |
| 5 | GO:0009570: chloroplast stroma | 8.29E-47 |
| 6 | GO:0009941: chloroplast envelope | 3.18E-37 |
| 7 | GO:0009534: chloroplast thylakoid | 8.35E-36 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 8.23E-32 |
| 9 | GO:0009579: thylakoid | 6.20E-27 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 3.09E-18 |
| 11 | GO:0031977: thylakoid lumen | 1.69E-14 |
| 12 | GO:0005840: ribosome | 7.31E-13 |
| 13 | GO:0010287: plastoglobule | 2.20E-09 |
| 14 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.37E-07 |
| 15 | GO:0030095: chloroplast photosystem II | 1.94E-06 |
| 16 | GO:0005960: glycine cleavage complex | 3.35E-05 |
| 17 | GO:0010319: stromule | 4.78E-05 |
| 18 | GO:0009295: nucleoid | 4.78E-05 |
| 19 | GO:0009508: plastid chromosome | 5.64E-05 |
| 20 | GO:0009536: plastid | 5.74E-05 |
| 21 | GO:0009706: chloroplast inner membrane | 9.22E-05 |
| 22 | GO:0009547: plastid ribosome | 3.04E-04 |
| 23 | GO:0009501: amyloplast | 3.09E-04 |
| 24 | GO:0009538: photosystem I reaction center | 3.09E-04 |
| 25 | GO:0009523: photosystem II | 3.65E-04 |
| 26 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 6.66E-04 |
| 27 | GO:0030093: chloroplast photosystem I | 6.66E-04 |
| 28 | GO:0010007: magnesium chelatase complex | 1.08E-03 |
| 29 | GO:0030076: light-harvesting complex | 1.18E-03 |
| 30 | GO:0009654: photosystem II oxygen evolving complex | 1.60E-03 |
| 31 | GO:0015935: small ribosomal subunit | 1.76E-03 |
| 32 | GO:0009517: PSII associated light-harvesting complex II | 2.07E-03 |
| 33 | GO:0055035: plastid thylakoid membrane | 2.65E-03 |
| 34 | GO:0009522: photosystem I | 3.09E-03 |
| 35 | GO:0019898: extrinsic component of membrane | 3.31E-03 |
| 36 | GO:0016272: prefoldin complex | 3.93E-03 |
| 37 | GO:0009840: chloroplastic endopeptidase Clp complex | 3.93E-03 |
| 38 | GO:0009533: chloroplast stromal thylakoid | 4.64E-03 |
| 39 | GO:0000783: nuclear telomere cap complex | 6.18E-03 |
| 40 | GO:0045298: tubulin complex | 7.01E-03 |
| 41 | GO:0005763: mitochondrial small ribosomal subunit | 7.01E-03 |
| 42 | GO:0016020: membrane | 7.38E-03 |
| 43 | GO:0015934: large ribosomal subunit | 7.74E-03 |
| 44 | GO:0000311: plastid large ribosomal subunit | 1.07E-02 |
| 45 | GO:0048046: apoplast | 1.08E-02 |
| 46 | GO:0022626: cytosolic ribosome | 1.63E-02 |
| 47 | GO:0042651: thylakoid membrane | 1.72E-02 |
| 48 | GO:0009532: plastid stroma | 1.84E-02 |
| 49 | GO:0022625: cytosolic large ribosomal subunit | 1.86E-02 |
| 50 | GO:0005623: cell | 2.72E-02 |