co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G38660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900088: regulation of inositol biosynthetic process	0.00E+00
2	GO:1900091: regulation of raffinose biosynthetic process	0.00E+00
3	GO:0090056: regulation of chlorophyll metabolic process	0.00E+00
4	GO:0018293: protein-FAD linkage	0.00E+00
5	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
6	GO:0032780: negative regulation of ATPase activity	0.00E+00
7	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.02E-06
8	GO:0006555: methionine metabolic process	6.48E-05
9	GO:0019509: L-methionine salvage from methylthioadenosine	9.02E-05
10	GO:0006520: cellular amino acid metabolic process	1.19E-04
11	GO:0032956: regulation of actin cytoskeleton organization	1.91E-04
12	GO:0048438: floral whorl development	1.91E-04
13	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.91E-04
14	GO:0097502: mannosylation	1.91E-04
15	GO:0006567: threonine catabolic process	1.91E-04
16	GO:0009240: isopentenyl diphosphate biosynthetic process	1.91E-04
17	GO:0006285: base-excision repair, AP site formation	1.91E-04
18	GO:0030010: establishment of cell polarity	4.29E-04
19	GO:2000071: regulation of defense response by callose deposition	4.29E-04
20	GO:0006501: C-terminal protein lipidation	4.29E-04
21	GO:0010220: positive regulation of vernalization response	4.29E-04
22	GO:0048571: long-day photoperiodism	4.29E-04
23	GO:0019441: tryptophan catabolic process to kynurenine	4.29E-04
24	GO:0050992: dimethylallyl diphosphate biosynthetic process	4.29E-04
25	GO:0080183: response to photooxidative stress	4.29E-04
26	GO:0043100: pyrimidine nucleobase salvage	4.29E-04
27	GO:2000030: regulation of response to red or far red light	4.29E-04
28	GO:0006099: tricarboxylic acid cycle	5.51E-04
29	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	6.99E-04
30	GO:0044210: 'de novo' CTP biosynthetic process	6.99E-04
31	GO:1901562: response to paraquat	6.99E-04
32	GO:0009150: purine ribonucleotide metabolic process	6.99E-04
33	GO:0031929: TOR signaling	6.99E-04
34	GO:0015940: pantothenate biosynthetic process	6.99E-04
35	GO:0071492: cellular response to UV-A	6.99E-04
36	GO:0006760: folic acid-containing compound metabolic process	6.99E-04
37	GO:0010351: lithium ion transport	6.99E-04
38	GO:0055114: oxidation-reduction process	8.47E-04
39	GO:0009963: positive regulation of flavonoid biosynthetic process	9.97E-04
40	GO:0006516: glycoprotein catabolic process	9.97E-04
41	GO:0009647: skotomorphogenesis	9.97E-04
42	GO:0009399: nitrogen fixation	9.97E-04
43	GO:0016226: iron-sulfur cluster assembly	1.00E-03
44	GO:0009649: entrainment of circadian clock	1.32E-03
45	GO:0042594: response to starvation	1.32E-03
46	GO:0034613: cellular protein localization	1.32E-03
47	GO:0044804: nucleophagy	1.32E-03
48	GO:0006542: glutamine biosynthetic process	1.32E-03
49	GO:0006646: phosphatidylethanolamine biosynthetic process	1.32E-03
50	GO:0070534: protein K63-linked ubiquitination	1.32E-03
51	GO:0015976: carbon utilization	1.32E-03
52	GO:0006545: glycine biosynthetic process	1.32E-03
53	GO:0071486: cellular response to high light intensity	1.32E-03
54	GO:0009765: photosynthesis, light harvesting	1.32E-03
55	GO:0000422: mitophagy	1.68E-03
56	GO:0098719: sodium ion import across plasma membrane	1.68E-03
57	GO:0046283: anthocyanin-containing compound metabolic process	1.68E-03
58	GO:0000045: autophagosome assembly	2.07E-03
59	GO:0006796: phosphate-containing compound metabolic process	2.07E-03
60	GO:0007035: vacuolar acidification	2.07E-03
61	GO:0033365: protein localization to organelle	2.07E-03
62	GO:0000060: protein import into nucleus, translocation	2.07E-03
63	GO:0009117: nucleotide metabolic process	2.07E-03
64	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	2.07E-03
65	GO:0006301: postreplication repair	2.07E-03
66	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.07E-03
67	GO:0070814: hydrogen sulfide biosynthetic process	2.07E-03
68	GO:0009058: biosynthetic process	2.29E-03
69	GO:0010076: maintenance of floral meristem identity	2.49E-03
70	GO:0010077: maintenance of inflorescence meristem identity	2.49E-03
71	GO:1901001: negative regulation of response to salt stress	2.49E-03
72	GO:0022904: respiratory electron transport chain	2.93E-03
73	GO:0050790: regulation of catalytic activity	2.93E-03
74	GO:0030091: protein repair	3.40E-03
75	GO:0000028: ribosomal small subunit assembly	3.40E-03
76	GO:0009231: riboflavin biosynthetic process	3.40E-03
77	GO:0006102: isocitrate metabolic process	3.40E-03
78	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.40E-03
79	GO:0015996: chlorophyll catabolic process	3.88E-03
80	GO:0009880: embryonic pattern specification	3.88E-03
81	GO:0009853: photorespiration	4.33E-03
82	GO:0006754: ATP biosynthetic process	4.40E-03
83	GO:0051453: regulation of intracellular pH	4.93E-03
84	GO:0042761: very long-chain fatty acid biosynthetic process	4.93E-03
85	GO:0006979: response to oxidative stress	5.24E-03
86	GO:0006995: cellular response to nitrogen starvation	5.48E-03
87	GO:0000103: sulfate assimilation	5.48E-03
88	GO:0009641: shade avoidance	5.48E-03
89	GO:0009970: cellular response to sulfate starvation	5.48E-03
90	GO:0006879: cellular iron ion homeostasis	6.06E-03
91	GO:0009682: induced systemic resistance	6.06E-03
92	GO:0010582: floral meristem determinacy	6.66E-03
93	GO:0006790: sulfur compound metabolic process	6.66E-03
94	GO:0009691: cytokinin biosynthetic process	7.28E-03
95	GO:0050826: response to freezing	7.28E-03
96	GO:0006094: gluconeogenesis	7.28E-03
97	GO:0006829: zinc II ion transport	7.28E-03
98	GO:0015031: protein transport	7.86E-03
99	GO:0019853: L-ascorbic acid biosynthetic process	8.57E-03
100	GO:0010039: response to iron ion	8.57E-03
101	GO:0009225: nucleotide-sugar metabolic process	8.57E-03
102	GO:0009620: response to fungus	9.76E-03
103	GO:2000377: regulation of reactive oxygen species metabolic process	9.94E-03
104	GO:0008299: isoprenoid biosynthetic process	1.07E-02
105	GO:0010431: seed maturation	1.14E-02
106	GO:0019915: lipid storage	1.14E-02
107	GO:0061077: chaperone-mediated protein folding	1.14E-02
108	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.21E-02
109	GO:0006012: galactose metabolic process	1.29E-02
110	GO:0009693: ethylene biosynthetic process	1.29E-02
111	GO:0006284: base-excision repair	1.37E-02
112	GO:0008152: metabolic process	1.37E-02
113	GO:0042391: regulation of membrane potential	1.53E-02
114	GO:0080022: primary root development	1.53E-02
115	GO:0010118: stomatal movement	1.53E-02
116	GO:0015991: ATP hydrolysis coupled proton transport	1.53E-02
117	GO:0015986: ATP synthesis coupled proton transport	1.70E-02
118	GO:0006814: sodium ion transport	1.70E-02
119	GO:0008654: phospholipid biosynthetic process	1.79E-02
120	GO:0010150: leaf senescence	1.86E-02
121	GO:0002229: defense response to oomycetes	1.88E-02
122	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.88E-02
123	GO:1901657: glycosyl compound metabolic process	2.06E-02
124	GO:0006464: cellular protein modification process	2.15E-02
125	GO:0006914: autophagy	2.15E-02
126	GO:0071805: potassium ion transmembrane transport	2.25E-02
127	GO:0010027: thylakoid membrane organization	2.44E-02
128	GO:0016126: sterol biosynthetic process	2.44E-02
129	GO:0006906: vesicle fusion	2.64E-02
130	GO:0042128: nitrate assimilation	2.64E-02
131	GO:0035556: intracellular signal transduction	2.68E-02
132	GO:0048573: photoperiodism, flowering	2.74E-02
133	GO:0015995: chlorophyll biosynthetic process	2.74E-02
134	GO:0016311: dephosphorylation	2.84E-02
135	GO:0009407: toxin catabolic process	3.16E-02
136	GO:0010119: regulation of stomatal movement	3.27E-02
137	GO:0010043: response to zinc ion	3.27E-02
138	GO:0007568: aging	3.27E-02
139	GO:0048527: lateral root development	3.27E-02
140	GO:0005975: carbohydrate metabolic process	3.36E-02
141	GO:0009867: jasmonic acid mediated signaling pathway	3.49E-02
142	GO:0030001: metal ion transport	3.83E-02
143	GO:0006887: exocytosis	3.94E-02
144	GO:0009651: response to salt stress	4.08E-02
145	GO:0009640: photomorphogenesis	4.18E-02
146	GO:0042546: cell wall biogenesis	4.30E-02
147	GO:0000165: MAPK cascade	4.78E-02
148	GO:0031347: regulation of defense response	4.78E-02
149	GO:0042538: hyperosmotic salinity response	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
2	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
3	GO:0047710: bis(5'-adenosyl)-triphosphatase activity	0.00E+00
4	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
5	GO:0042030: ATPase inhibitor activity	0.00E+00
6	GO:0047918: GDP-mannose 3,5-epimerase activity	0.00E+00
7	GO:0052925: dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity	0.00E+00
8	GO:0043530: adenosine 5'-monophosphoramidase activity	0.00E+00
9	GO:0000033: alpha-1,3-mannosyltransferase activity	0.00E+00
10	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
11	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.40E-06
12	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.47E-05
13	GO:0047627: adenylylsulfatase activity	1.47E-05
14	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	6.48E-05
15	GO:0004793: threonine aldolase activity	1.91E-04
16	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	1.91E-04
17	GO:0016783: sulfurtransferase activity	1.91E-04
18	GO:0052917: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase activity	1.91E-04
19	GO:0004307: ethanolaminephosphotransferase activity	1.91E-04
20	GO:0019707: protein-cysteine S-acyltransferase activity	1.91E-04
21	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	1.91E-04
22	GO:0008732: L-allo-threonine aldolase activity	1.91E-04
23	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	1.91E-04
24	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.91E-04
25	GO:0046480: galactolipid galactosyltransferase activity	1.91E-04
26	GO:0080079: cellobiose glucosidase activity	1.91E-04
27	GO:0004560: alpha-L-fucosidase activity	1.91E-04
28	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	1.91E-04
29	GO:0016776: phosphotransferase activity, phosphate group as acceptor	1.91E-04
30	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	1.91E-04
31	GO:0016780: phosphotransferase activity, for other substituted phosphate groups	1.91E-04
32	GO:0030572: phosphatidyltransferase activity	4.29E-04
33	GO:0004142: diacylglycerol cholinephosphotransferase activity	4.29E-04
34	GO:0004061: arylformamidase activity	4.29E-04
35	GO:0008967: phosphoglycolate phosphatase activity	4.29E-04
36	GO:0004450: isocitrate dehydrogenase (NADP+) activity	4.29E-04
37	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	4.29E-04
38	GO:0003935: GTP cyclohydrolase II activity	6.99E-04
39	GO:0004781: sulfate adenylyltransferase (ATP) activity	6.99E-04
40	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.99E-04
41	GO:0051287: NAD binding	9.10E-04
42	GO:0004792: thiosulfate sulfurtransferase activity	9.97E-04
43	GO:0003883: CTP synthase activity	9.97E-04
44	GO:0016656: monodehydroascorbate reductase (NADH) activity	9.97E-04
45	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	9.97E-04
46	GO:0000254: C-4 methylsterol oxidase activity	9.97E-04
47	GO:0019776: Atg8 ligase activity	1.32E-03
48	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.32E-03
49	GO:0019104: DNA N-glycosylase activity	1.32E-03
50	GO:0008177: succinate dehydrogenase (ubiquinone) activity	1.68E-03
51	GO:0016651: oxidoreductase activity, acting on NAD(P)H	1.68E-03
52	GO:0005496: steroid binding	1.68E-03
53	GO:0004356: glutamate-ammonia ligase activity	1.68E-03
54	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.83E-03
55	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	2.07E-03
56	GO:0015081: sodium ion transmembrane transporter activity	2.07E-03
57	GO:0016491: oxidoreductase activity	2.43E-03
58	GO:0005261: cation channel activity	2.49E-03
59	GO:0004427: inorganic diphosphatase activity	2.93E-03
60	GO:0016621: cinnamoyl-CoA reductase activity	2.93E-03
61	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	3.40E-03
62	GO:0004034: aldose 1-epimerase activity	3.40E-03
63	GO:0015078: hydrogen ion transmembrane transporter activity	3.88E-03
64	GO:0016887: ATPase activity	5.10E-03
65	GO:0015386: potassium:proton antiporter activity	6.06E-03
66	GO:0046961: proton-transporting ATPase activity, rotational mechanism	6.06E-03
67	GO:0016787: hydrolase activity	6.33E-03
68	GO:0008378: galactosyltransferase activity	6.66E-03
69	GO:0015266: protein channel activity	7.28E-03
70	GO:0004089: carbonate dehydratase activity	7.28E-03
71	GO:0030552: cAMP binding	8.57E-03
72	GO:0030553: cGMP binding	8.57E-03
73	GO:0042803: protein homodimerization activity	9.85E-03
74	GO:0051536: iron-sulfur cluster binding	9.94E-03
75	GO:0005528: FK506 binding	9.94E-03
76	GO:0005216: ion channel activity	1.07E-02
77	GO:0004176: ATP-dependent peptidase activity	1.14E-02
78	GO:0004386: helicase activity	1.17E-02
79	GO:0030170: pyridoxal phosphate binding	1.49E-02
80	GO:0005249: voltage-gated potassium channel activity	1.53E-02
81	GO:0030551: cyclic nucleotide binding	1.53E-02
82	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.62E-02
83	GO:0046873: metal ion transmembrane transporter activity	1.62E-02
84	GO:0050662: coenzyme binding	1.70E-02
85	GO:0016853: isomerase activity	1.70E-02
86	GO:0048038: quinone binding	1.88E-02
87	GO:0004197: cysteine-type endopeptidase activity	1.97E-02
88	GO:0015385: sodium:proton antiporter activity	2.06E-02
89	GO:0003824: catalytic activity	2.09E-02
90	GO:0016791: phosphatase activity	2.15E-02
91	GO:0008237: metallopeptidase activity	2.25E-02
92	GO:0008483: transaminase activity	2.25E-02
93	GO:0016597: amino acid binding	2.34E-02
94	GO:0016168: chlorophyll binding	2.54E-02
95	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.64E-02
96	GO:0004683: calmodulin-dependent protein kinase activity	2.74E-02
97	GO:0008168: methyltransferase activity	2.77E-02
98	GO:0000287: magnesium ion binding	2.82E-02
99	GO:0004601: peroxidase activity	2.87E-02
100	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.95E-02
101	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.16E-02
102	GO:0004222: metalloendopeptidase activity	3.16E-02
103	GO:0004672: protein kinase activity	3.21E-02
104	GO:0050897: cobalt ion binding	3.27E-02
105	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.49E-02
106	GO:0008422: beta-glucosidase activity	3.71E-02
107	GO:0000149: SNARE binding	3.71E-02
108	GO:0050661: NADP binding	3.83E-02
109	GO:0005507: copper ion binding	3.88E-02
110	GO:0004364: glutathione transferase activity	4.06E-02
111	GO:0005484: SNAP receptor activity	4.18E-02
112	GO:0051537: 2 iron, 2 sulfur cluster binding	4.41E-02
113	GO:0005198: structural molecule activity	4.54E-02
114	GO:0005525: GTP binding	4.62E-02
115	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0005747: mitochondrial respiratory chain complex I	8.19E-10
2	GO:0009507: chloroplast	5.98E-06
3	GO:0005829: cytosol	1.01E-04
4	GO:0031932: TORC2 complex	1.91E-04
5	GO:0000152: nuclear ubiquitin ligase complex	1.91E-04
6	GO:0005737: cytoplasm	2.64E-04
7	GO:0034274: Atg12-Atg5-Atg16 complex	4.29E-04
8	GO:0031931: TORC1 complex	6.99E-04
9	GO:0045271: respiratory chain complex I	8.41E-04
10	GO:0009526: plastid envelope	1.32E-03
11	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.32E-03
12	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.32E-03
13	GO:0009527: plastid outer membrane	1.32E-03
14	GO:0031372: UBC13-MMS2 complex	1.32E-03
15	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.68E-03
16	GO:0005739: mitochondrion	1.79E-03
17	GO:0005777: peroxisome	1.91E-03
18	GO:0031463: Cul3-RING ubiquitin ligase complex	2.07E-03
19	GO:0009536: plastid	2.11E-03
20	GO:0031359: integral component of chloroplast outer membrane	2.93E-03
21	GO:0009501: amyloplast	3.40E-03
22	GO:0045273: respiratory chain complex II	3.40E-03
23	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	3.40E-03
24	GO:0034045: pre-autophagosomal structure membrane	3.88E-03
25	GO:0042644: chloroplast nucleoid	4.40E-03
26	GO:0031901: early endosome membrane	4.40E-03
27	GO:0005763: mitochondrial small ribosomal subunit	4.40E-03
28	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.40E-03
29	GO:0016604: nuclear body	4.93E-03
30	GO:0031966: mitochondrial membrane	6.99E-03
31	GO:0005764: lysosome	7.91E-03
32	GO:0005753: mitochondrial proton-transporting ATP synthase complex	8.57E-03
33	GO:0009570: chloroplast stroma	8.65E-03
34	GO:0005758: mitochondrial intermembrane space	9.94E-03
35	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.37E-02
36	GO:0005773: vacuole	1.41E-02
37	GO:0005759: mitochondrial matrix	1.69E-02
38	GO:0009523: photosystem II	1.79E-02
39	GO:0009535: chloroplast thylakoid membrane	2.08E-02
40	GO:0032580: Golgi cisterna membrane	2.15E-02
41	GO:0005778: peroxisomal membrane	2.25E-02
42	GO:0010319: stromule	2.25E-02
43	GO:0005783: endoplasmic reticulum	2.48E-02
44	GO:0009941: chloroplast envelope	2.85E-02
45	GO:0005643: nuclear pore	2.95E-02
46	GO:0009707: chloroplast outer membrane	2.95E-02
47	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.15E-02
48	GO:0005789: endoplasmic reticulum membrane	3.40E-02
49	GO:0031969: chloroplast membrane	3.56E-02
50	GO:0031201: SNARE complex	3.94E-02