co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G38330

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
4	GO:0090042: tubulin deacetylation	0.00E+00
5	GO:0006114: glycerol biosynthetic process	0.00E+00
6	GO:0017038: protein import	0.00E+00
7	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
8	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
9	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
10	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
11	GO:2000505: regulation of energy homeostasis	0.00E+00
12	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
13	GO:0061635: regulation of protein complex stability	0.00E+00
14	GO:0010027: thylakoid membrane organization	1.47E-06
15	GO:0015979: photosynthesis	3.29E-05
16	GO:0010196: nonphotochemical quenching	3.32E-05
17	GO:0009642: response to light intensity	4.35E-05
18	GO:0010206: photosystem II repair	6.88E-05
19	GO:0018298: protein-chromophore linkage	8.11E-05
20	GO:0006438: valyl-tRNA aminoacylation	8.43E-05
21	GO:0000481: maturation of 5S rRNA	8.43E-05
22	GO:0042371: vitamin K biosynthetic process	8.43E-05
23	GO:0043609: regulation of carbon utilization	8.43E-05
24	GO:0043007: maintenance of rDNA	8.43E-05
25	GO:0034337: RNA folding	8.43E-05
26	GO:0043085: positive regulation of catalytic activity	1.18E-04
27	GO:0009773: photosynthetic electron transport in photosystem I	1.18E-04
28	GO:0006790: sulfur compound metabolic process	1.37E-04
29	GO:0006432: phenylalanyl-tRNA aminoacylation	2.00E-04
30	GO:0018026: peptidyl-lysine monomethylation	2.00E-04
31	GO:0097054: L-glutamate biosynthetic process	2.00E-04
32	GO:0046854: phosphatidylinositol phosphorylation	2.04E-04
33	GO:0009768: photosynthesis, light harvesting in photosystem I	2.83E-04
34	GO:0006418: tRNA aminoacylation for protein translation	2.83E-04
35	GO:0090391: granum assembly	3.35E-04
36	GO:0005977: glycogen metabolic process	3.35E-04
37	GO:0006000: fructose metabolic process	3.35E-04
38	GO:0016117: carotenoid biosynthetic process	4.38E-04
39	GO:0006537: glutamate biosynthetic process	4.84E-04
40	GO:0006020: inositol metabolic process	4.84E-04
41	GO:0006662: glycerol ether metabolic process	5.10E-04
42	GO:0006021: inositol biosynthetic process	6.44E-04
43	GO:0010021: amylopectin biosynthetic process	6.44E-04
44	GO:0010109: regulation of photosynthesis	6.44E-04
45	GO:0019676: ammonia assimilation cycle	6.44E-04
46	GO:0006109: regulation of carbohydrate metabolic process	6.44E-04
47	GO:0045727: positive regulation of translation	6.44E-04
48	GO:0015994: chlorophyll metabolic process	6.44E-04
49	GO:0009793: embryo development ending in seed dormancy	7.83E-04
50	GO:0032543: mitochondrial translation	8.14E-04
51	GO:0010236: plastoquinone biosynthetic process	8.14E-04
52	GO:0016123: xanthophyll biosynthetic process	8.14E-04
53	GO:0046855: inositol phosphate dephosphorylation	9.94E-04
54	GO:0042793: transcription from plastid promoter	9.94E-04
55	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	9.94E-04
56	GO:0016311: dephosphorylation	1.09E-03
57	GO:0042372: phylloquinone biosynthetic process	1.18E-03
58	GO:0009658: chloroplast organization	1.36E-03
59	GO:0009645: response to low light intensity stimulus	1.39E-03
60	GO:0009772: photosynthetic electron transport in photosystem II	1.39E-03
61	GO:0034599: cellular response to oxidative stress	1.50E-03
62	GO:0006605: protein targeting	1.60E-03
63	GO:0032508: DNA duplex unwinding	1.60E-03
64	GO:0009657: plastid organization	1.83E-03
65	GO:0032544: plastid translation	1.83E-03
66	GO:0006002: fructose 6-phosphate metabolic process	1.83E-03
67	GO:0071482: cellular response to light stimulus	1.83E-03
68	GO:0045454: cell redox homeostasis	2.23E-03
69	GO:0006415: translational termination	2.82E-03
70	GO:0019684: photosynthesis, light reaction	2.82E-03
71	GO:0009089: lysine biosynthetic process via diaminopimelate	2.82E-03
72	GO:0009073: aromatic amino acid family biosynthetic process	2.82E-03
73	GO:0000272: polysaccharide catabolic process	2.82E-03
74	GO:0018119: peptidyl-cysteine S-nitrosylation	2.82E-03
75	GO:0006006: glucose metabolic process	3.37E-03
76	GO:0055114: oxidation-reduction process	3.47E-03
77	GO:0019253: reductive pentose-phosphate cycle	3.66E-03
78	GO:0010207: photosystem II assembly	3.66E-03
79	GO:0008299: isoprenoid biosynthetic process	4.89E-03
80	GO:0016575: histone deacetylation	4.89E-03
81	GO:0061077: chaperone-mediated protein folding	5.22E-03
82	GO:0009561: megagametogenesis	6.24E-03
83	GO:0042631: cellular response to water deprivation	6.97E-03
84	GO:0009646: response to absence of light	7.72E-03
85	GO:0019252: starch biosynthetic process	8.10E-03
86	GO:0010090: trichome morphogenesis	9.30E-03
87	GO:0015995: chlorophyll biosynthetic process	1.23E-02
88	GO:0006499: N-terminal protein myristoylation	1.42E-02
89	GO:0010218: response to far red light	1.42E-02
90	GO:0007568: aging	1.47E-02
91	GO:0009637: response to blue light	1.57E-02
92	GO:0009853: photorespiration	1.57E-02
93	GO:0006281: DNA repair	1.71E-02
94	GO:0010114: response to red light	1.88E-02
95	GO:0009744: response to sucrose	1.88E-02
96	GO:0009644: response to high light intensity	1.99E-02
97	GO:0009409: response to cold	2.16E-02
98	GO:0006364: rRNA processing	2.32E-02
99	GO:0006096: glycolytic process	2.62E-02
100	GO:0043086: negative regulation of catalytic activity	2.62E-02
101	GO:0009416: response to light stimulus	3.04E-02
102	GO:0006396: RNA processing	3.05E-02
103	GO:0006413: translational initiation	4.19E-02
104	GO:0007623: circadian rhythm	4.40E-02
105	GO:0010468: regulation of gene expression	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0051721: protein phosphatase 2A binding	0.00E+00
2	GO:0042903: tubulin deacetylase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
5	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
6	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
7	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
8	GO:0043014: alpha-tubulin binding	0.00E+00
9	GO:0004823: leucine-tRNA ligase activity	0.00E+00
10	GO:0046408: chlorophyll synthetase activity	0.00E+00
11	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
12	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
13	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.44E-05
14	GO:0004832: valine-tRNA ligase activity	8.43E-05
15	GO:0016041: glutamate synthase (ferredoxin) activity	8.43E-05
16	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	8.43E-05
17	GO:0008047: enzyme activator activity	1.00E-04
18	GO:0031072: heat shock protein binding	1.58E-04
19	GO:0052833: inositol monophosphate 4-phosphatase activity	2.00E-04
20	GO:0004826: phenylalanine-tRNA ligase activity	2.00E-04
21	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.00E-04
22	GO:0019156: isoamylase activity	2.00E-04
23	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.00E-04
24	GO:0019200: carbohydrate kinase activity	2.00E-04
25	GO:0010291: carotene beta-ring hydroxylase activity	2.00E-04
26	GO:0047746: chlorophyllase activity	2.00E-04
27	GO:0010297: heteropolysaccharide binding	2.00E-04
28	GO:0052832: inositol monophosphate 3-phosphatase activity	2.00E-04
29	GO:0008934: inositol monophosphate 1-phosphatase activity	2.00E-04
30	GO:0031409: pigment binding	2.29E-04
31	GO:0005528: FK506 binding	2.55E-04
32	GO:0002161: aminoacyl-tRNA editing activity	3.35E-04
33	GO:0070402: NADPH binding	3.35E-04
34	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	3.35E-04
35	GO:0015462: ATPase-coupled protein transmembrane transporter activity	3.35E-04
36	GO:0003913: DNA photolyase activity	3.35E-04
37	GO:0047134: protein-disulfide reductase activity	4.38E-04
38	GO:0004812: aminoacyl-tRNA ligase activity	4.38E-04
39	GO:0048487: beta-tubulin binding	4.84E-04
40	GO:0004792: thiosulfate sulfurtransferase activity	4.84E-04
41	GO:0016149: translation release factor activity, codon specific	4.84E-04
42	GO:0004791: thioredoxin-disulfide reductase activity	5.47E-04
43	GO:0004659: prenyltransferase activity	6.44E-04
44	GO:0016279: protein-lysine N-methyltransferase activity	6.44E-04
45	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	7.08E-04
46	GO:0051538: 3 iron, 4 sulfur cluster binding	8.14E-04
47	GO:0016168: chlorophyll binding	9.39E-04
48	GO:0004556: alpha-amylase activity	9.94E-04
49	GO:2001070: starch binding	9.94E-04
50	GO:0004721: phosphoprotein phosphatase activity	1.04E-03
51	GO:0004017: adenylate kinase activity	1.18E-03
52	GO:0009881: photoreceptor activity	1.39E-03
53	GO:0004033: aldo-keto reductase (NADP) activity	1.60E-03
54	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	1.83E-03
55	GO:0003747: translation release factor activity	2.06E-03
56	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.14E-03
57	GO:0046872: metal ion binding	2.25E-03
58	GO:0016787: hydrolase activity	2.69E-03
59	GO:0000049: tRNA binding	3.09E-03
60	GO:0051082: unfolded protein binding	3.50E-03
61	GO:0015035: protein disulfide oxidoreductase activity	3.60E-03
62	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.48E-03
63	GO:0004857: enzyme inhibitor activity	4.57E-03
64	GO:0004407: histone deacetylase activity	4.57E-03
65	GO:0003756: protein disulfide isomerase activity	6.24E-03
66	GO:0050662: coenzyme binding	7.72E-03
67	GO:0016853: isomerase activity	7.72E-03
68	GO:0008236: serine-type peptidase activity	1.28E-02
69	GO:0030145: manganese ion binding	1.47E-02
70	GO:0003746: translation elongation factor activity	1.57E-02
71	GO:0003993: acid phosphatase activity	1.62E-02
72	GO:0050661: NADP binding	1.72E-02
73	GO:0043621: protein self-association	1.99E-02
74	GO:0016491: oxidoreductase activity	2.08E-02
75	GO:0051287: NAD binding	2.15E-02
76	GO:0020037: heme binding	2.61E-02
77	GO:0019843: rRNA binding	3.50E-02
78	GO:0019825: oxygen binding	4.31E-02
79	GO:0003743: translation initiation factor activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	5.74E-47
3	GO:0009570: chloroplast stroma	1.86E-24
4	GO:0009534: chloroplast thylakoid	2.31E-20
5	GO:0009535: chloroplast thylakoid membrane	2.25E-18
6	GO:0009543: chloroplast thylakoid lumen	3.79E-11
7	GO:0009941: chloroplast envelope	8.05E-11
8	GO:0031977: thylakoid lumen	3.05E-09
9	GO:0009579: thylakoid	2.05E-07
10	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.86E-07
11	GO:0010287: plastoglobule	4.11E-05
12	GO:0009515: granal stacked thylakoid	8.43E-05
13	GO:0009782: photosystem I antenna complex	8.43E-05
14	GO:0030076: light-harvesting complex	2.04E-04
15	GO:0031969: chloroplast membrane	2.57E-04
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.06E-03
17	GO:0032040: small-subunit processome	3.09E-03
18	GO:0009508: plastid chromosome	3.37E-03
19	GO:0030095: chloroplast photosystem II	3.66E-03
20	GO:0005623: cell	4.48E-03
21	GO:0042651: thylakoid membrane	4.89E-03
22	GO:0009654: photosystem II oxygen evolving complex	4.89E-03
23	GO:0005759: mitochondrial matrix	5.48E-03
24	GO:0009522: photosystem I	7.72E-03
25	GO:0019898: extrinsic component of membrane	8.10E-03
26	GO:0009295: nucleoid	1.01E-02
27	GO:0010319: stromule	1.01E-02
28	GO:0048046: apoplast	2.31E-02