co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G38210

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
2	GO:0009715: chalcone biosynthetic process	0.00E+00
3	GO:0042821: pyridoxal biosynthetic process	0.00E+00
4	GO:0005996: monosaccharide metabolic process	0.00E+00
5	GO:0015882: L-ascorbic acid transport	0.00E+00
6	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
7	GO:0006114: glycerol biosynthetic process	0.00E+00
8	GO:0042820: vitamin B6 catabolic process	0.00E+00
9	GO:0015979: photosynthesis	1.75E-15
10	GO:0009768: photosynthesis, light harvesting in photosystem I	2.22E-13
11	GO:0018298: protein-chromophore linkage	1.01E-12
12	GO:0009769: photosynthesis, light harvesting in photosystem II	2.72E-09
13	GO:0090391: granum assembly	3.12E-09
14	GO:0042549: photosystem II stabilization	2.03E-07
15	GO:0010218: response to far red light	2.95E-07
16	GO:0010196: nonphotochemical quenching	5.88E-07
17	GO:0009645: response to low light intensity stimulus	5.88E-07
18	GO:0010114: response to red light	8.61E-07
19	GO:0009642: response to light intensity	9.09E-07
20	GO:0009644: response to high light intensity	1.06E-06
21	GO:0010206: photosystem II repair	1.90E-06
22	GO:0009773: photosynthetic electron transport in photosystem I	4.56E-06
23	GO:0006021: inositol biosynthetic process	1.33E-05
24	GO:0009637: response to blue light	1.39E-05
25	GO:0009269: response to desiccation	2.23E-05
26	GO:0010189: vitamin E biosynthetic process	4.63E-05
27	GO:0009416: response to light stimulus	9.01E-05
28	GO:0010027: thylakoid membrane organization	1.20E-04
29	GO:0000481: maturation of 5S rRNA	1.25E-04
30	GO:0043686: co-translational protein modification	1.25E-04
31	GO:0010028: xanthophyll cycle	1.25E-04
32	GO:0034337: RNA folding	1.25E-04
33	GO:0009443: pyridoxal 5'-phosphate salvage	1.25E-04
34	GO:0051775: response to redox state	1.25E-04
35	GO:0071277: cellular response to calcium ion	1.25E-04
36	GO:0090333: regulation of stomatal closure	1.25E-04
37	GO:0019684: photosynthesis, light reaction	2.10E-04
38	GO:0043085: positive regulation of catalytic activity	2.10E-04
39	GO:0034599: cellular response to oxidative stress	2.59E-04
40	GO:0006094: gluconeogenesis	2.77E-04
41	GO:0000256: allantoin catabolic process	2.90E-04
42	GO:0006729: tetrahydrobiopterin biosynthetic process	2.90E-04
43	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.90E-04
44	GO:0035304: regulation of protein dephosphorylation	2.90E-04
45	GO:0009629: response to gravity	2.90E-04
46	GO:0010207: photosystem II assembly	3.14E-04
47	GO:0019253: reductive pentose-phosphate cycle	3.14E-04
48	GO:0090351: seedling development	3.52E-04
49	GO:0042742: defense response to bacterium	4.35E-04
50	GO:1902448: positive regulation of shade avoidance	4.78E-04
51	GO:0006000: fructose metabolic process	4.78E-04
52	GO:0010136: ureide catabolic process	4.78E-04
53	GO:0080167: response to karrikin	6.02E-04
54	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.85E-04
55	GO:0006020: inositol metabolic process	6.85E-04
56	GO:0071484: cellular response to light intensity	6.85E-04
57	GO:0006107: oxaloacetate metabolic process	6.85E-04
58	GO:0006145: purine nucleobase catabolic process	6.85E-04
59	GO:0042989: sequestering of actin monomers	6.85E-04
60	GO:0006662: glycerol ether metabolic process	8.52E-04
61	GO:0006734: NADH metabolic process	9.08E-04
62	GO:0015976: carbon utilization	9.08E-04
63	GO:0009765: photosynthesis, light harvesting	9.08E-04
64	GO:0006109: regulation of carbohydrate metabolic process	9.08E-04
65	GO:0045727: positive regulation of translation	9.08E-04
66	GO:0015994: chlorophyll metabolic process	9.08E-04
67	GO:0030104: water homeostasis	9.08E-04
68	GO:0010236: plastoquinone biosynthetic process	1.15E-03
69	GO:0031365: N-terminal protein amino acid modification	1.15E-03
70	GO:0035434: copper ion transmembrane transport	1.15E-03
71	GO:0030041: actin filament polymerization	1.15E-03
72	GO:0009635: response to herbicide	1.41E-03
73	GO:0050665: hydrogen peroxide biosynthetic process	1.41E-03
74	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.41E-03
75	GO:0046855: inositol phosphate dephosphorylation	1.41E-03
76	GO:0007623: circadian rhythm	1.54E-03
77	GO:0009854: oxidative photosynthetic carbon pathway	1.68E-03
78	GO:0071470: cellular response to osmotic stress	1.68E-03
79	GO:0015995: chlorophyll biosynthetic process	1.74E-03
80	GO:0016311: dephosphorylation	1.83E-03
81	GO:0051510: regulation of unidimensional cell growth	1.98E-03
82	GO:1900057: positive regulation of leaf senescence	1.98E-03
83	GO:0009813: flavonoid biosynthetic process	2.02E-03
84	GO:0009735: response to cytokinin	2.24E-03
85	GO:0009704: de-etiolation	2.29E-03
86	GO:0032508: DNA duplex unwinding	2.29E-03
87	GO:0031540: regulation of anthocyanin biosynthetic process	2.29E-03
88	GO:0016559: peroxisome fission	2.29E-03
89	GO:0032544: plastid translation	2.61E-03
90	GO:0017004: cytochrome complex assembly	2.61E-03
91	GO:0006002: fructose 6-phosphate metabolic process	2.61E-03
92	GO:0071482: cellular response to light stimulus	2.61E-03
93	GO:0009658: chloroplast organization	2.67E-03
94	GO:0098656: anion transmembrane transport	2.95E-03
95	GO:0009245: lipid A biosynthetic process	2.95E-03
96	GO:0006098: pentose-phosphate shunt	2.95E-03
97	GO:0009821: alkaloid biosynthetic process	2.95E-03
98	GO:0009409: response to cold	3.13E-03
99	GO:0010205: photoinhibition	3.31E-03
100	GO:0000272: polysaccharide catabolic process	4.06E-03
101	GO:0018119: peptidyl-cysteine S-nitrosylation	4.06E-03
102	GO:0009073: aromatic amino acid family biosynthetic process	4.06E-03
103	GO:0006364: rRNA processing	4.20E-03
104	GO:0010224: response to UV-B	4.34E-03
105	GO:0045454: cell redox homeostasis	4.41E-03
106	GO:0006790: sulfur compound metabolic process	4.45E-03
107	GO:0006108: malate metabolic process	4.86E-03
108	GO:0006006: glucose metabolic process	4.86E-03
109	GO:0005986: sucrose biosynthetic process	4.86E-03
110	GO:0006096: glycolytic process	4.95E-03
111	GO:0010020: chloroplast fission	5.28E-03
112	GO:0046854: phosphatidylinositol phosphorylation	5.71E-03
113	GO:0007010: cytoskeleton organization	6.61E-03
114	GO:0006825: copper ion transport	7.08E-03
115	GO:0009845: seed germination	8.07E-03
116	GO:0009411: response to UV	8.56E-03
117	GO:0071215: cellular response to abscisic acid stimulus	8.56E-03
118	GO:0009733: response to auxin	8.93E-03
119	GO:0009561: megagametogenesis	9.07E-03
120	GO:0042631: cellular response to water deprivation	1.01E-02
121	GO:0042335: cuticle development	1.01E-02
122	GO:0006814: sodium ion transport	1.12E-02
123	GO:0019252: starch biosynthetic process	1.18E-02
124	GO:0008654: phospholipid biosynthetic process	1.18E-02
125	GO:0009791: post-embryonic development	1.18E-02
126	GO:0071554: cell wall organization or biogenesis	1.24E-02
127	GO:0048235: pollen sperm cell differentiation	1.30E-02
128	GO:0006810: transport	1.34E-02
129	GO:0051607: defense response to virus	1.54E-02
130	GO:0055114: oxidation-reduction process	1.54E-02
131	GO:0009627: systemic acquired resistance	1.74E-02
132	GO:0048573: photoperiodism, flowering	1.81E-02
133	GO:0009817: defense response to fungus, incompatible interaction	1.94E-02
134	GO:0006811: ion transport	2.08E-02
135	GO:0007568: aging	2.15E-02
136	GO:0048527: lateral root development	2.15E-02
137	GO:0010119: regulation of stomatal movement	2.15E-02
138	GO:0016051: carbohydrate biosynthetic process	2.30E-02
139	GO:0009853: photorespiration	2.30E-02
140	GO:0006099: tricarboxylic acid cycle	2.37E-02
141	GO:0009793: embryo development ending in seed dormancy	2.64E-02
142	GO:0042542: response to hydrogen peroxide	2.68E-02
143	GO:0009926: auxin polar transport	2.75E-02
144	GO:0009640: photomorphogenesis	2.75E-02
145	GO:0032259: methylation	2.81E-02
146	GO:0043086: negative regulation of catalytic activity	3.83E-02
147	GO:0005975: carbohydrate metabolic process	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
2	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
3	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
4	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
5	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
6	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
7	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
8	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
9	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
10	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
11	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
12	GO:0045550: geranylgeranyl reductase activity	0.00E+00
13	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
14	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
15	GO:0031409: pigment binding	9.29E-14
16	GO:0016168: chlorophyll binding	3.22E-11
17	GO:0008746: NAD(P)+ transhydrogenase activity	1.25E-04
18	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.25E-04
19	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.25E-04
20	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.25E-04
21	GO:0010242: oxygen evolving activity	1.25E-04
22	GO:0042586: peptide deformylase activity	1.25E-04
23	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.25E-04
24	GO:0008047: enzyme activator activity	1.79E-04
25	GO:0031072: heat shock protein binding	2.77E-04
26	GO:0047746: chlorophyllase activity	2.90E-04
27	GO:0010297: heteropolysaccharide binding	2.90E-04
28	GO:0052832: inositol monophosphate 3-phosphatase activity	2.90E-04
29	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.90E-04
30	GO:0008934: inositol monophosphate 1-phosphatase activity	2.90E-04
31	GO:0052833: inositol monophosphate 4-phosphatase activity	2.90E-04
32	GO:0004512: inositol-3-phosphate synthase activity	2.90E-04
33	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.90E-04
34	GO:0019172: glyoxalase III activity	2.90E-04
35	GO:0008266: poly(U) RNA binding	3.14E-04
36	GO:0046872: metal ion binding	3.80E-04
37	GO:0070402: NADPH binding	4.78E-04
38	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.78E-04
39	GO:0003913: DNA photolyase activity	4.78E-04
40	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	6.85E-04
41	GO:0008508: bile acid:sodium symporter activity	6.85E-04
42	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	6.85E-04
43	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	6.85E-04
44	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.85E-04
45	GO:0004792: thiosulfate sulfurtransferase activity	6.85E-04
46	GO:0047134: protein-disulfide reductase activity	7.35E-04
47	GO:0015035: protein disulfide oxidoreductase activity	8.12E-04
48	GO:0008891: glycolate oxidase activity	9.08E-04
49	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.08E-04
50	GO:0008453: alanine-glyoxylate transaminase activity	9.08E-04
51	GO:0080032: methyl jasmonate esterase activity	9.08E-04
52	GO:0045430: chalcone isomerase activity	9.08E-04
53	GO:0004791: thioredoxin-disulfide reductase activity	9.12E-04
54	GO:0003785: actin monomer binding	1.15E-03
55	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.18E-03
56	GO:0016615: malate dehydrogenase activity	1.41E-03
57	GO:0080030: methyl indole-3-acetate esterase activity	1.41E-03
58	GO:0004332: fructose-bisphosphate aldolase activity	1.41E-03
59	GO:0000293: ferric-chelate reductase activity	1.41E-03
60	GO:0042578: phosphoric ester hydrolase activity	1.41E-03
61	GO:0031177: phosphopantetheine binding	1.41E-03
62	GO:0004462: lactoylglutathione lyase activity	1.41E-03
63	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.68E-03
64	GO:0030060: L-malate dehydrogenase activity	1.68E-03
65	GO:0000035: acyl binding	1.68E-03
66	GO:0009881: photoreceptor activity	1.98E-03
67	GO:0042802: identical protein binding	2.08E-03
68	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.29E-03
69	GO:0004033: aldo-keto reductase (NADP) activity	2.29E-03
70	GO:0008135: translation factor activity, RNA binding	2.61E-03
71	GO:0005375: copper ion transmembrane transporter activity	2.61E-03
72	GO:0016844: strictosidine synthase activity	3.31E-03
73	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.31E-03
74	GO:0005198: structural molecule activity	3.50E-03
75	GO:0005315: inorganic phosphate transmembrane transporter activity	4.86E-03
76	GO:0004089: carbonate dehydratase activity	4.86E-03
77	GO:0003712: transcription cofactor activity	5.71E-03
78	GO:0003924: GTPase activity	5.75E-03
79	GO:0051082: unfolded protein binding	5.96E-03
80	GO:0003954: NADH dehydrogenase activity	6.61E-03
81	GO:0004857: enzyme inhibitor activity	6.61E-03
82	GO:0005509: calcium ion binding	6.63E-03
83	GO:0016787: hydrolase activity	6.98E-03
84	GO:0019843: rRNA binding	7.46E-03
85	GO:0008514: organic anion transmembrane transporter activity	9.07E-03
86	GO:0003756: protein disulfide isomerase activity	9.07E-03
87	GO:0010181: FMN binding	1.12E-02
88	GO:0050662: coenzyme binding	1.12E-02
89	GO:0048038: quinone binding	1.24E-02
90	GO:0016413: O-acetyltransferase activity	1.54E-02
91	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.87E-02
92	GO:0005525: GTP binding	2.24E-02
93	GO:0003746: translation elongation factor activity	2.30E-02
94	GO:0003993: acid phosphatase activity	2.37E-02
95	GO:0050661: NADP binding	2.52E-02
96	GO:0051287: NAD binding	3.15E-02
97	GO:0016491: oxidoreductase activity	4.07E-02
98	GO:0016874: ligase activity	4.19E-02
99	GO:0003779: actin binding	4.28E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	2.49E-41
3	GO:0009534: chloroplast thylakoid	4.78E-38
4	GO:0009535: chloroplast thylakoid membrane	1.14E-37
5	GO:0009579: thylakoid	4.06E-26
6	GO:0009941: chloroplast envelope	3.33E-24
7	GO:0010287: plastoglobule	4.84E-17
8	GO:0009570: chloroplast stroma	2.15E-16
9	GO:0009522: photosystem I	3.44E-12
10	GO:0009523: photosystem II	4.16E-10
11	GO:0030076: light-harvesting complex	1.42E-09
12	GO:0009543: chloroplast thylakoid lumen	1.25E-08
13	GO:0031977: thylakoid lumen	1.72E-08
14	GO:0009517: PSII associated light-harvesting complex II	4.49E-08
15	GO:0030095: chloroplast photosystem II	1.16E-07
16	GO:0009654: photosystem II oxygen evolving complex	3.25E-07
17	GO:0019898: extrinsic component of membrane	1.79E-06
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.90E-06
19	GO:0048046: apoplast	2.71E-05
20	GO:0009538: photosystem I reaction center	8.08E-05
21	GO:0009783: photosystem II antenna complex	1.25E-04
22	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.90E-04
23	GO:0031304: intrinsic component of mitochondrial inner membrane	2.90E-04
24	GO:0042406: extrinsic component of endoplasmic reticulum membrane	4.78E-04
25	GO:0005777: peroxisome	6.84E-04
26	GO:0008180: COP9 signalosome	2.95E-03
27	GO:0016021: integral component of membrane	3.59E-03
28	GO:0032040: small-subunit processome	4.45E-03
29	GO:0005938: cell cortex	4.86E-03
30	GO:0009706: chloroplast inner membrane	5.96E-03
31	GO:0042651: thylakoid membrane	7.08E-03
32	GO:0016020: membrane	7.30E-03
33	GO:0005623: cell	7.66E-03
34	GO:0015629: actin cytoskeleton	8.56E-03
35	GO:0009705: plant-type vacuole membrane	1.03E-02
36	GO:0010319: stromule	1.48E-02
37	GO:0019005: SCF ubiquitin ligase complex	1.94E-02
38	GO:0009707: chloroplast outer membrane	1.94E-02
39	GO:0031969: chloroplast membrane	1.99E-02
40	GO:0000502: proteasome complex	3.40E-02
41	GO:0022626: cytosolic ribosome	4.94E-02