co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G38170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016576: histone dephosphorylation	0.00E+00
2	GO:0010202: response to low fluence red light stimulus	0.00E+00
3	GO:0009583: detection of light stimulus	0.00E+00
4	GO:0090470: shoot organ boundary specification	0.00E+00
5	GO:0046294: formaldehyde catabolic process	0.00E+00
6	GO:0048856: anatomical structure development	0.00E+00
7	GO:0017012: protein-phytochromobilin linkage	0.00E+00
8	GO:0010336: gibberellic acid homeostasis	0.00E+00
9	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
10	GO:0071000: response to magnetism	0.00E+00
11	GO:0010617: circadian regulation of calcium ion oscillation	6.85E-07
12	GO:0010343: singlet oxygen-mediated programmed cell death	6.85E-07
13	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.06E-05
14	GO:0034971: histone H3-R17 methylation	1.16E-04
15	GO:0072387: flavin adenine dinucleotide metabolic process	1.16E-04
16	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.16E-04
17	GO:0006567: threonine catabolic process	1.16E-04
18	GO:0034970: histone H3-R2 methylation	1.16E-04
19	GO:0034972: histone H3-R26 methylation	1.16E-04
20	GO:1902265: abscisic acid homeostasis	1.16E-04
21	GO:0009638: phototropism	1.34E-04
22	GO:0007154: cell communication	2.69E-04
23	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.69E-04
24	GO:0099402: plant organ development	2.69E-04
25	GO:0035335: peptidyl-tyrosine dephosphorylation	2.69E-04
26	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	2.69E-04
27	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.69E-04
28	GO:1901529: positive regulation of anion channel activity	2.69E-04
29	GO:0009640: photomorphogenesis	2.96E-04
30	GO:0045739: positive regulation of DNA repair	4.45E-04
31	GO:0010476: gibberellin mediated signaling pathway	4.45E-04
32	GO:0010325: raffinose family oligosaccharide biosynthetic process	4.45E-04
33	GO:0031022: nuclear migration along microfilament	4.45E-04
34	GO:1902448: positive regulation of shade avoidance	4.45E-04
35	GO:1901672: positive regulation of systemic acquired resistance	4.45E-04
36	GO:1901332: negative regulation of lateral root development	6.38E-04
37	GO:0010371: regulation of gibberellin biosynthetic process	6.38E-04
38	GO:0009584: detection of visible light	6.38E-04
39	GO:0010148: transpiration	6.38E-04
40	GO:1902347: response to strigolactone	8.47E-04
41	GO:0009902: chloroplast relocation	8.47E-04
42	GO:0034613: cellular protein localization	8.47E-04
43	GO:0009687: abscisic acid metabolic process	8.47E-04
44	GO:0070534: protein K63-linked ubiquitination	8.47E-04
45	GO:0006545: glycine biosynthetic process	8.47E-04
46	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	8.47E-04
47	GO:0006552: leucine catabolic process	8.47E-04
48	GO:0009649: entrainment of circadian clock	8.47E-04
49	GO:0008295: spermidine biosynthetic process	8.47E-04
50	GO:0010117: photoprotection	1.07E-03
51	GO:0046283: anthocyanin-containing compound metabolic process	1.07E-03
52	GO:0000304: response to singlet oxygen	1.07E-03
53	GO:0006301: postreplication repair	1.31E-03
54	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.31E-03
55	GO:0006555: methionine metabolic process	1.31E-03
56	GO:1901371: regulation of leaf morphogenesis	1.31E-03
57	GO:0060918: auxin transport	1.31E-03
58	GO:0016126: sterol biosynthetic process	1.33E-03
59	GO:0010029: regulation of seed germination	1.41E-03
60	GO:0009903: chloroplast avoidance movement	1.56E-03
61	GO:0048444: floral organ morphogenesis	1.56E-03
62	GO:0010310: regulation of hydrogen peroxide metabolic process	1.56E-03
63	GO:0019509: L-methionine salvage from methylthioadenosine	1.56E-03
64	GO:0018298: protein-chromophore linkage	1.73E-03
65	GO:0051510: regulation of unidimensional cell growth	1.84E-03
66	GO:0010374: stomatal complex development	1.84E-03
67	GO:0010161: red light signaling pathway	1.84E-03
68	GO:0010218: response to far red light	1.90E-03
69	GO:0009850: auxin metabolic process	2.13E-03
70	GO:0009704: de-etiolation	2.13E-03
71	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.13E-03
72	GO:0009637: response to blue light	2.18E-03
73	GO:0046916: cellular transition metal ion homeostasis	2.74E-03
74	GO:0009056: catabolic process	2.74E-03
75	GO:0015780: nucleotide-sugar transport	2.74E-03
76	GO:0009821: alkaloid biosynthetic process	2.74E-03
77	GO:1900426: positive regulation of defense response to bacterium	3.07E-03
78	GO:0046777: protein autophosphorylation	3.32E-03
79	GO:0045036: protein targeting to chloroplast	3.41E-03
80	GO:0051555: flavonol biosynthetic process	3.41E-03
81	GO:0006325: chromatin organization	3.41E-03
82	GO:0008285: negative regulation of cell proliferation	3.76E-03
83	GO:2000028: regulation of photoperiodism, flowering	4.50E-03
84	GO:0050826: response to freezing	4.50E-03
85	GO:0010075: regulation of meristem growth	4.50E-03
86	GO:0009785: blue light signaling pathway	4.50E-03
87	GO:0030048: actin filament-based movement	4.50E-03
88	GO:0009266: response to temperature stimulus	4.89E-03
89	GO:2000377: regulation of reactive oxygen species metabolic process	6.12E-03
90	GO:0010073: meristem maintenance	6.56E-03
91	GO:0010227: floral organ abscission	7.92E-03
92	GO:0006012: galactose metabolic process	7.92E-03
93	GO:0007623: circadian rhythm	9.21E-03
94	GO:0010118: stomatal movement	9.38E-03
95	GO:0010228: vegetative to reproductive phase transition of meristem	9.65E-03
96	GO:0010268: brassinosteroid homeostasis	9.89E-03
97	GO:0006520: cellular amino acid metabolic process	9.89E-03
98	GO:0042752: regulation of circadian rhythm	1.04E-02
99	GO:0009646: response to absence of light	1.04E-02
100	GO:0006810: transport	1.13E-02
101	GO:0016132: brassinosteroid biosynthetic process	1.15E-02
102	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.15E-02
103	GO:0009630: gravitropism	1.20E-02
104	GO:1901657: glycosyl compound metabolic process	1.26E-02
105	GO:0016125: sterol metabolic process	1.31E-02
106	GO:0071805: potassium ion transmembrane transport	1.37E-02
107	GO:0042128: nitrate assimilation	1.61E-02
108	GO:0010411: xyloglucan metabolic process	1.67E-02
109	GO:0006950: response to stress	1.67E-02
110	GO:0016311: dephosphorylation	1.73E-02
111	GO:0010043: response to zinc ion	1.99E-02
112	GO:0007568: aging	1.99E-02
113	GO:0009867: jasmonic acid mediated signaling pathway	2.12E-02
114	GO:0006839: mitochondrial transport	2.33E-02
115	GO:0030001: metal ion transport	2.33E-02
116	GO:0010114: response to red light	2.54E-02
117	GO:0009926: auxin polar transport	2.54E-02
118	GO:0009644: response to high light intensity	2.69E-02
119	GO:0008643: carbohydrate transport	2.69E-02
120	GO:0031347: regulation of defense response	2.91E-02
121	GO:0009809: lignin biosynthetic process	3.15E-02
122	GO:0009585: red, far-red light phototransduction	3.15E-02
123	GO:0006813: potassium ion transport	3.15E-02
124	GO:0051603: proteolysis involved in cellular protein catabolic process	3.22E-02
125	GO:0010224: response to UV-B	3.22E-02
126	GO:0006857: oligopeptide transport	3.30E-02
127	GO:0009909: regulation of flower development	3.38E-02
128	GO:0006417: regulation of translation	3.38E-02
129	GO:0009409: response to cold	3.68E-02
130	GO:0009742: brassinosteroid mediated signaling pathway	4.21E-02
131	GO:0005975: carbohydrate metabolic process	4.23E-02
132	GO:0009416: response to light stimulus	4.63E-02
133	GO:0009058: biosynthetic process	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
2	GO:0031517: red light photoreceptor activity	0.00E+00
3	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
4	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
5	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
6	GO:0000254: C-4 methylsterol oxidase activity	6.10E-06
7	GO:0016783: sulfurtransferase activity	1.16E-04
8	GO:0008732: L-allo-threonine aldolase activity	1.16E-04
9	GO:0016920: pyroglutamyl-peptidase activity	1.16E-04
10	GO:0031516: far-red light photoreceptor activity	1.16E-04
11	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.16E-04
12	GO:0004485: methylcrotonoyl-CoA carboxylase activity	1.16E-04
13	GO:0046480: galactolipid galactosyltransferase activity	1.16E-04
14	GO:0080079: cellobiose glucosidase activity	1.16E-04
15	GO:1990841: promoter-specific chromatin binding	1.16E-04
16	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	1.16E-04
17	GO:0004793: threonine aldolase activity	1.16E-04
18	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	2.69E-04
19	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	2.69E-04
20	GO:0010331: gibberellin binding	2.69E-04
21	GO:0009883: red or far-red light photoreceptor activity	2.69E-04
22	GO:0004766: spermidine synthase activity	2.69E-04
23	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	2.69E-04
24	GO:0004046: aminoacylase activity	2.69E-04
25	GO:0035241: protein-arginine omega-N monomethyltransferase activity	2.69E-04
26	GO:0008967: phosphoglycolate phosphatase activity	2.69E-04
27	GO:0004075: biotin carboxylase activity	4.45E-04
28	GO:0008020: G-protein coupled photoreceptor activity	4.45E-04
29	GO:0008469: histone-arginine N-methyltransferase activity	4.45E-04
30	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	4.45E-04
31	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.45E-04
32	GO:0004848: ureidoglycolate hydrolase activity	4.45E-04
33	GO:0004792: thiosulfate sulfurtransferase activity	6.38E-04
34	GO:0009882: blue light photoreceptor activity	6.38E-04
35	GO:0016851: magnesium chelatase activity	6.38E-04
36	GO:0016208: AMP binding	1.31E-03
37	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.84E-03
38	GO:0016621: cinnamoyl-CoA reductase activity	1.84E-03
39	GO:0004034: aldose 1-epimerase activity	2.13E-03
40	GO:0046914: transition metal ion binding	2.43E-03
41	GO:0071949: FAD binding	2.74E-03
42	GO:0016844: strictosidine synthase activity	3.07E-03
43	GO:0004673: protein histidine kinase activity	3.41E-03
44	GO:0004860: protein kinase inhibitor activity	3.76E-03
45	GO:0042803: protein homodimerization activity	4.06E-03
46	GO:0008378: galactosyltransferase activity	4.13E-03
47	GO:0031072: heat shock protein binding	4.50E-03
48	GO:0000155: phosphorelay sensor kinase activity	4.50E-03
49	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.87E-03
50	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.87E-03
51	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.89E-03
52	GO:0022857: transmembrane transporter activity	5.02E-03
53	GO:0016787: hydrolase activity	5.74E-03
54	GO:0015079: potassium ion transmembrane transporter activity	6.56E-03
55	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	6.85E-03
56	GO:0004176: ATP-dependent peptidase activity	7.00E-03
57	GO:0008194: UDP-glycosyltransferase activity	1.03E-02
58	GO:0050662: coenzyme binding	1.04E-02
59	GO:0016853: isomerase activity	1.04E-02
60	GO:0048038: quinone binding	1.15E-02
61	GO:0042802: identical protein binding	1.17E-02
62	GO:0016791: phosphatase activity	1.31E-02
63	GO:0008237: metallopeptidase activity	1.37E-02
64	GO:0008168: methyltransferase activity	1.38E-02
65	GO:0046982: protein heterodimerization activity	1.40E-02
66	GO:0016413: O-acetyltransferase activity	1.43E-02
67	GO:0016788: hydrolase activity, acting on ester bonds	1.46E-02
68	GO:0030247: polysaccharide binding	1.67E-02
69	GO:0004497: monooxygenase activity	1.78E-02
70	GO:0004222: metalloendopeptidase activity	1.92E-02
71	GO:0050897: cobalt ion binding	1.99E-02
72	GO:0004871: signal transducer activity	2.23E-02
73	GO:0008422: beta-glucosidase activity	2.26E-02
74	GO:0004674: protein serine/threonine kinase activity	2.40E-02
75	GO:0005506: iron ion binding	2.47E-02
76	GO:0004185: serine-type carboxypeptidase activity	2.54E-02
77	GO:0051537: 2 iron, 2 sulfur cluster binding	2.69E-02
78	GO:0031625: ubiquitin protein ligase binding	3.38E-02
79	GO:0051082: unfolded protein binding	4.04E-02
80	GO:0004672: protein kinase activity	4.06E-02
81	GO:0004386: helicase activity	4.30E-02
82	GO:0016758: transferase activity, transferring hexosyl groups	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0009507: chloroplast	6.05E-06
3	GO:0016604: nuclear body	1.34E-04
4	GO:0016605: PML body	4.45E-04
5	GO:0031372: UBC13-MMS2 complex	8.47E-04
6	GO:0031359: integral component of chloroplast outer membrane	1.84E-03
7	GO:0009536: plastid	2.16E-03
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.74E-03
9	GO:0009535: chloroplast thylakoid membrane	6.19E-03
10	GO:0042651: thylakoid membrane	6.56E-03
11	GO:0005829: cytosol	1.46E-02
12	GO:0009707: chloroplast outer membrane	1.80E-02
13	GO:0009941: chloroplast envelope	2.22E-02
14	GO:0005743: mitochondrial inner membrane	2.44E-02
15	GO:0043231: intracellular membrane-bounded organelle	2.89E-02
16	GO:0016607: nuclear speck	3.63E-02
17	GO:0009706: chloroplast inner membrane	4.04E-02
18	GO:0005623: cell	4.83E-02
19	GO:0005886: plasma membrane	4.98E-02