Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G38140

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905421: regulation of plant organ morphogenesis0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0030155: regulation of cell adhesion0.00E+00
4GO:0019323: pentose catabolic process0.00E+00
5GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
6GO:0061635: regulation of protein complex stability0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:0016553: base conversion or substitution editing0.00E+00
9GO:0005996: monosaccharide metabolic process0.00E+00
10GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
11GO:0018023: peptidyl-lysine trimethylation0.00E+00
12GO:0015979: photosynthesis1.66E-17
13GO:0009735: response to cytokinin1.07E-14
14GO:0032544: plastid translation9.28E-14
15GO:0006412: translation2.05E-13
16GO:0009409: response to cold8.28E-10
17GO:0042254: ribosome biogenesis1.91E-09
18GO:0009773: photosynthetic electron transport in photosystem I2.43E-08
19GO:0019464: glycine decarboxylation via glycine cleavage system8.06E-07
20GO:0030388: fructose 1,6-bisphosphate metabolic process6.50E-06
21GO:0010027: thylakoid membrane organization7.07E-06
22GO:0015995: chlorophyll biosynthetic process1.07E-05
23GO:0005978: glycogen biosynthetic process1.43E-05
24GO:0042742: defense response to bacterium1.94E-05
25GO:0006000: fructose metabolic process2.27E-05
26GO:0009658: chloroplast organization3.74E-05
27GO:0019252: starch biosynthetic process4.82E-05
28GO:0005983: starch catabolic process7.62E-05
29GO:0045727: positive regulation of translation8.79E-05
30GO:0010021: amylopectin biosynthetic process8.79E-05
31GO:0009817: defense response to fungus, incompatible interaction1.77E-04
32GO:0010196: nonphotochemical quenching3.44E-04
33GO:0009645: response to low light intensity stimulus3.44E-04
34GO:0000023: maltose metabolic process3.81E-04
35GO:0000025: maltose catabolic process3.81E-04
36GO:0043489: RNA stabilization3.81E-04
37GO:0044262: cellular carbohydrate metabolic process3.81E-04
38GO:0080093: regulation of photorespiration3.81E-04
39GO:0031998: regulation of fatty acid beta-oxidation3.81E-04
40GO:1902458: positive regulation of stomatal opening3.81E-04
41GO:0006002: fructose 6-phosphate metabolic process5.27E-04
42GO:0010206: photosystem II repair6.32E-04
43GO:0005982: starch metabolic process7.45E-04
44GO:1903426: regulation of reactive oxygen species biosynthetic process8.27E-04
45GO:0010270: photosystem II oxygen evolving complex assembly8.27E-04
46GO:0019388: galactose catabolic process8.27E-04
47GO:0005976: polysaccharide metabolic process8.27E-04
48GO:0018026: peptidyl-lysine monomethylation8.27E-04
49GO:0043085: positive regulation of catalytic activity9.99E-04
50GO:0018119: peptidyl-cysteine S-nitrosylation9.99E-04
51GO:0045037: protein import into chloroplast stroma1.14E-03
52GO:0006979: response to oxidative stress1.16E-03
53GO:0006094: gluconeogenesis1.29E-03
54GO:0005986: sucrose biosynthetic process1.29E-03
55GO:0048281: inflorescence morphogenesis1.34E-03
56GO:0006518: peptide metabolic process1.34E-03
57GO:0080055: low-affinity nitrate transport1.34E-03
58GO:0090153: regulation of sphingolipid biosynthetic process1.34E-03
59GO:0016050: vesicle organization1.34E-03
60GO:0010207: photosystem II assembly1.46E-03
61GO:0019253: reductive pentose-phosphate cycle1.46E-03
62GO:0051085: chaperone mediated protein folding requiring cofactor1.93E-03
63GO:0006241: CTP biosynthetic process1.93E-03
64GO:0009052: pentose-phosphate shunt, non-oxidative branch1.93E-03
65GO:0010731: protein glutathionylation1.93E-03
66GO:0006424: glutamyl-tRNA aminoacylation1.93E-03
67GO:0006165: nucleoside diphosphate phosphorylation1.93E-03
68GO:0006228: UTP biosynthetic process1.93E-03
69GO:0010148: transpiration1.93E-03
70GO:0009590: detection of gravity1.93E-03
71GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.93E-03
72GO:0034599: cellular response to oxidative stress1.94E-03
73GO:0006289: nucleotide-excision repair2.02E-03
74GO:0009768: photosynthesis, light harvesting in photosystem I2.22E-03
75GO:0045454: cell redox homeostasis2.25E-03
76GO:0061077: chaperone-mediated protein folding2.44E-03
77GO:0007623: circadian rhythm2.50E-03
78GO:0015976: carbon utilization2.60E-03
79GO:0009765: photosynthesis, light harvesting2.60E-03
80GO:0006109: regulation of carbohydrate metabolic process2.60E-03
81GO:0006183: GTP biosynthetic process2.60E-03
82GO:2000122: negative regulation of stomatal complex development2.60E-03
83GO:0006546: glycine catabolic process2.60E-03
84GO:0010037: response to carbon dioxide2.60E-03
85GO:0006808: regulation of nitrogen utilization2.60E-03
86GO:0000304: response to singlet oxygen3.32E-03
87GO:0032543: mitochondrial translation3.32E-03
88GO:0006544: glycine metabolic process3.32E-03
89GO:0045038: protein import into chloroplast thylakoid membrane3.32E-03
90GO:0006097: glyoxylate cycle3.32E-03
91GO:0006461: protein complex assembly3.32E-03
92GO:0000413: protein peptidyl-prolyl isomerization3.72E-03
93GO:0006662: glycerol ether metabolic process4.00E-03
94GO:0042549: photosystem II stabilization4.11E-03
95GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.11E-03
96GO:0000470: maturation of LSU-rRNA4.11E-03
97GO:0006828: manganese ion transport4.11E-03
98GO:0010190: cytochrome b6f complex assembly4.11E-03
99GO:0006563: L-serine metabolic process4.11E-03
100GO:0009955: adaxial/abaxial pattern specification4.95E-03
101GO:0042026: protein refolding4.95E-03
102GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.95E-03
103GO:1901259: chloroplast rRNA processing4.95E-03
104GO:0010555: response to mannitol4.95E-03
105GO:0070370: cellular heat acclimation5.85E-03
106GO:0010103: stomatal complex morphogenesis5.85E-03
107GO:0055114: oxidation-reduction process5.95E-03
108GO:0030091: protein repair6.80E-03
109GO:0009642: response to light intensity6.80E-03
110GO:2000070: regulation of response to water deprivation6.80E-03
111GO:0015996: chlorophyll catabolic process7.80E-03
112GO:0001558: regulation of cell growth7.80E-03
113GO:0007186: G-protein coupled receptor signaling pathway7.80E-03
114GO:0009657: plastid organization7.80E-03
115GO:0006810: transport8.04E-03
116GO:0006783: heme biosynthetic process8.86E-03
117GO:0018298: protein-chromophore linkage9.36E-03
118GO:0010205: photoinhibition9.96E-03
119GO:0035999: tetrahydrofolate interconversion9.96E-03
120GO:0042761: very long-chain fatty acid biosynthetic process9.96E-03
121GO:0006633: fatty acid biosynthetic process1.03E-02
122GO:0031627: telomeric loop formation1.11E-02
123GO:0006782: protoporphyrinogen IX biosynthetic process1.11E-02
124GO:0043069: negative regulation of programmed cell death1.11E-02
125GO:0009853: photorespiration1.19E-02
126GO:0006816: calcium ion transport1.23E-02
127GO:0006415: translational termination1.23E-02
128GO:0000272: polysaccharide catabolic process1.23E-02
129GO:0009750: response to fructose1.23E-02
130GO:0016485: protein processing1.23E-02
131GO:0010582: floral meristem determinacy1.36E-02
132GO:0006457: protein folding1.39E-02
133GO:0006631: fatty acid metabolic process1.42E-02
134GO:0009767: photosynthetic electron transport chain1.48E-02
135GO:0010102: lateral root morphogenesis1.48E-02
136GO:0006108: malate metabolic process1.48E-02
137GO:0006006: glucose metabolic process1.48E-02
138GO:0010020: chloroplast fission1.62E-02
139GO:0009644: response to high light intensity1.66E-02
140GO:0005985: sucrose metabolic process1.75E-02
141GO:0010025: wax biosynthetic process1.89E-02
142GO:0006636: unsaturated fatty acid biosynthetic process1.89E-02
143GO:0019344: cysteine biosynthetic process2.04E-02
144GO:0009944: polarity specification of adaxial/abaxial axis2.04E-02
145GO:0000027: ribosomal large subunit assembly2.04E-02
146GO:0006364: rRNA processing2.08E-02
147GO:0051302: regulation of cell division2.19E-02
148GO:0006418: tRNA aminoacylation for protein translation2.19E-02
149GO:0007017: microtubule-based process2.19E-02
150GO:0031408: oxylipin biosynthetic process2.34E-02
151GO:0016114: terpenoid biosynthetic process2.34E-02
152GO:0046686: response to cadmium ion2.43E-02
153GO:0006096: glycolytic process2.46E-02
154GO:0035428: hexose transmembrane transport2.50E-02
155GO:0007005: mitochondrion organization2.50E-02
156GO:0006012: galactose metabolic process2.65E-02
157GO:0009686: gibberellin biosynthetic process2.65E-02
158GO:0009411: response to UV2.65E-02
159GO:0001944: vasculature development2.65E-02
160GO:0006284: base-excision repair2.82E-02
161GO:0042631: cellular response to water deprivation3.15E-02
162GO:0042335: cuticle development3.15E-02
163GO:0010182: sugar mediated signaling pathway3.33E-02
164GO:0048868: pollen tube development3.33E-02
165GO:0046323: glucose import3.33E-02
166GO:0015986: ATP synthesis coupled proton transport3.50E-02
167GO:0000302: response to reactive oxygen species3.86E-02
168GO:0030163: protein catabolic process4.24E-02
169GO:0009790: embryo development4.31E-02
170GO:0008152: metabolic process4.85E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
3GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
4GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
5GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
6GO:0004822: isoleucine-tRNA ligase activity0.00E+00
7GO:0009899: ent-kaurene synthase activity0.00E+00
8GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
9GO:0051738: xanthophyll binding0.00E+00
10GO:0019843: rRNA binding2.84E-25
11GO:0003735: structural constituent of ribosome3.26E-16
12GO:0005528: FK506 binding3.79E-09
13GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.17E-08
14GO:0008266: poly(U) RNA binding4.01E-06
15GO:0051920: peroxiredoxin activity5.99E-06
16GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.50E-06
17GO:0010297: heteropolysaccharide binding6.50E-06
18GO:0016209: antioxidant activity1.43E-05
19GO:0004375: glycine dehydrogenase (decarboxylating) activity4.98E-05
20GO:0016851: magnesium chelatase activity4.98E-05
21GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.81E-04
22GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.81E-04
23GO:0080132: fatty acid alpha-hydroxylase activity3.81E-04
24GO:0004856: xylulokinase activity3.81E-04
25GO:0009496: plastoquinol--plastocyanin reductase activity3.81E-04
26GO:0004134: 4-alpha-glucanotransferase activity3.81E-04
27GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.81E-04
28GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.81E-04
29GO:0019203: carbohydrate phosphatase activity3.81E-04
30GO:0008158: hedgehog receptor activity3.81E-04
31GO:0004853: uroporphyrinogen decarboxylase activity3.81E-04
32GO:0045485: omega-6 fatty acid desaturase activity3.81E-04
33GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.81E-04
34GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity3.81E-04
35GO:0050662: coenzyme binding5.11E-04
36GO:0016491: oxidoreductase activity7.44E-04
37GO:0033201: alpha-1,4-glucan synthase activity8.27E-04
38GO:0004750: ribulose-phosphate 3-epimerase activity8.27E-04
39GO:0018708: thiol S-methyltransferase activity8.27E-04
40GO:0003844: 1,4-alpha-glucan branching enzyme activity8.27E-04
41GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.27E-04
42GO:0004614: phosphoglucomutase activity8.27E-04
43GO:0008967: phosphoglycolate phosphatase activity8.27E-04
44GO:0004618: phosphoglycerate kinase activity8.27E-04
45GO:0008047: enzyme activator activity8.68E-04
46GO:0016168: chlorophyll binding1.04E-03
47GO:0080054: low-affinity nitrate transmembrane transporter activity1.34E-03
48GO:0004324: ferredoxin-NADP+ reductase activity1.34E-03
49GO:0043169: cation binding1.34E-03
50GO:0004373: glycogen (starch) synthase activity1.34E-03
51GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.34E-03
52GO:0017150: tRNA dihydrouridine synthase activity1.34E-03
53GO:0005504: fatty acid binding1.34E-03
54GO:0002161: aminoacyl-tRNA editing activity1.34E-03
55GO:0004148: dihydrolipoyl dehydrogenase activity1.34E-03
56GO:0045174: glutathione dehydrogenase (ascorbate) activity1.34E-03
57GO:0030267: glyoxylate reductase (NADP) activity1.34E-03
58GO:0004222: metalloendopeptidase activity1.53E-03
59GO:0031409: pigment binding1.82E-03
60GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.93E-03
61GO:0016149: translation release factor activity, codon specific1.93E-03
62GO:0004550: nucleoside diphosphate kinase activity1.93E-03
63GO:0043023: ribosomal large subunit binding1.93E-03
64GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.60E-03
65GO:0019104: DNA N-glycosylase activity2.60E-03
66GO:0045430: chalcone isomerase activity2.60E-03
67GO:0009011: starch synthase activity2.60E-03
68GO:0019199: transmembrane receptor protein kinase activity2.60E-03
69GO:0008878: glucose-1-phosphate adenylyltransferase activity2.60E-03
70GO:0042277: peptide binding2.60E-03
71GO:0016279: protein-lysine N-methyltransferase activity2.60E-03
72GO:0004372: glycine hydroxymethyltransferase activity3.32E-03
73GO:0003959: NADPH dehydrogenase activity3.32E-03
74GO:0016773: phosphotransferase activity, alcohol group as acceptor3.32E-03
75GO:0047134: protein-disulfide reductase activity3.44E-03
76GO:2001070: starch binding4.11E-03
77GO:0004130: cytochrome-c peroxidase activity4.11E-03
78GO:0016615: malate dehydrogenase activity4.11E-03
79GO:0004791: thioredoxin-disulfide reductase activity4.31E-03
80GO:0004601: peroxidase activity4.87E-03
81GO:0048038: quinone binding4.95E-03
82GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.95E-03
83GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.95E-03
84GO:0030060: L-malate dehydrogenase activity4.95E-03
85GO:0004602: glutathione peroxidase activity4.95E-03
86GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.64E-03
87GO:0051082: unfolded protein binding5.80E-03
88GO:0004034: aldose 1-epimerase activity6.80E-03
89GO:0004033: aldo-keto reductase (NADP) activity6.80E-03
90GO:0005515: protein binding7.74E-03
91GO:0015078: hydrogen ion transmembrane transporter activity7.80E-03
92GO:0004252: serine-type endopeptidase activity8.84E-03
93GO:0008138: protein tyrosine/serine/threonine phosphatase activity8.86E-03
94GO:0003747: translation release factor activity8.86E-03
95GO:0008236: serine-type peptidase activity8.90E-03
96GO:0005384: manganese ion transmembrane transporter activity9.96E-03
97GO:0044183: protein binding involved in protein folding1.23E-02
98GO:0003691: double-stranded telomeric DNA binding1.23E-02
99GO:0015386: potassium:proton antiporter activity1.23E-02
100GO:0000049: tRNA binding1.36E-02
101GO:0004022: alcohol dehydrogenase (NAD) activity1.48E-02
102GO:0004089: carbonate dehydratase activity1.48E-02
103GO:0015095: magnesium ion transmembrane transporter activity1.48E-02
104GO:0031072: heat shock protein binding1.48E-02
105GO:0051537: 2 iron, 2 sulfur cluster binding1.66E-02
106GO:0004857: enzyme inhibitor activity2.04E-02
107GO:0015079: potassium ion transmembrane transporter activity2.19E-02
108GO:0022891: substrate-specific transmembrane transporter activity2.65E-02
109GO:0004812: aminoacyl-tRNA ligase activity2.98E-02
110GO:0015035: protein disulfide oxidoreductase activity3.05E-02
111GO:0001085: RNA polymerase II transcription factor binding3.33E-02
112GO:0016853: isomerase activity3.50E-02
113GO:0005355: glucose transmembrane transporter activity3.50E-02
114GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding4.21E-02
115GO:0003684: damaged DNA binding4.43E-02
116GO:0008237: metallopeptidase activity4.62E-02
117GO:0005200: structural constituent of cytoskeleton4.62E-02
RankGO TermAdjusted P value
1GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0042579: microbody0.00E+00
5GO:0009507: chloroplast1.93E-115
6GO:0009570: chloroplast stroma1.50E-82
7GO:0009941: chloroplast envelope1.24E-80
8GO:0009535: chloroplast thylakoid membrane2.30E-56
9GO:0009534: chloroplast thylakoid8.77E-54
10GO:0009579: thylakoid3.18E-52
11GO:0009543: chloroplast thylakoid lumen6.27E-22
12GO:0031977: thylakoid lumen9.64E-19
13GO:0010319: stromule1.19E-17
14GO:0005840: ribosome4.59E-17
15GO:0010287: plastoglobule2.66E-14
16GO:0048046: apoplast7.34E-10
17GO:0016020: membrane9.57E-08
18GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.04E-07
19GO:0009706: chloroplast inner membrane1.56E-06
20GO:0009508: plastid chromosome3.02E-06
21GO:0009295: nucleoid5.23E-06
22GO:0009533: chloroplast stromal thylakoid9.55E-06
23GO:0009654: photosystem II oxygen evolving complex1.05E-05
24GO:0009538: photosystem I reaction center1.43E-05
25GO:0010007: magnesium chelatase complex2.27E-05
26GO:0019898: extrinsic component of membrane4.82E-05
27GO:0005960: glycine cleavage complex4.98E-05
28GO:0030095: chloroplast photosystem II1.12E-04
29GO:0031969: chloroplast membrane3.81E-04
30GO:0009782: photosystem I antenna complex3.81E-04
31GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.81E-04
32GO:0009501: amyloplast4.31E-04
33GO:0009523: photosystem II5.60E-04
34GO:0000427: plastid-encoded plastid RNA polymerase complex8.27E-04
35GO:0030093: chloroplast photosystem I8.27E-04
36GO:0000311: plastid large ribosomal subunit1.14E-03
37GO:0009528: plastid inner membrane1.34E-03
38GO:0000312: plastid small ribosomal subunit1.46E-03
39GO:0030076: light-harvesting complex1.63E-03
40GO:0015934: large ribosomal subunit1.63E-03
41GO:0009536: plastid1.85E-03
42GO:0022626: cytosolic ribosome2.39E-03
43GO:0015935: small ribosomal subunit2.44E-03
44GO:0009532: plastid stroma2.44E-03
45GO:0009527: plastid outer membrane2.60E-03
46GO:0009517: PSII associated light-harvesting complex II2.60E-03
47GO:0009512: cytochrome b6f complex3.32E-03
48GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)4.11E-03
49GO:0009522: photosystem I4.31E-03
50GO:0009840: chloroplastic endopeptidase Clp complex4.95E-03
51GO:0016272: prefoldin complex4.95E-03
52GO:0022625: cytosolic large ribosomal subunit7.30E-03
53GO:0000783: nuclear telomere cap complex7.80E-03
54GO:0042644: chloroplast nucleoid8.86E-03
55GO:0045298: tubulin complex8.86E-03
56GO:0005763: mitochondrial small ribosomal subunit8.86E-03
57GO:0043234: protein complex1.89E-02
58GO:0042651: thylakoid membrane2.19E-02
59GO:0005759: mitochondrial matrix4.63E-02
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Gene type



Gene DE type