co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G37660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
4	GO:0015979: photosynthesis	4.70E-12
5	GO:0010207: photosystem II assembly	2.25E-07
6	GO:0018298: protein-chromophore linkage	6.62E-06
7	GO:0032544: plastid translation	8.34E-06
8	GO:0010206: photosystem II repair	1.06E-05
9	GO:1902458: positive regulation of stomatal opening	2.53E-05
10	GO:0006006: glucose metabolic process	2.69E-05
11	GO:0009768: photosynthesis, light harvesting in photosystem I	5.21E-05
12	GO:0018026: peptidyl-lysine monomethylation	6.44E-05
13	GO:0006729: tetrahydrobiopterin biosynthetic process	6.44E-05
14	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.44E-05
15	GO:0035304: regulation of protein dephosphorylation	6.44E-05
16	GO:0019388: galactose catabolic process	6.44E-05
17	GO:0010581: regulation of starch biosynthetic process	1.13E-04
18	GO:0006412: translation	1.45E-04
19	GO:0009590: detection of gravity	1.69E-04
20	GO:0071484: cellular response to light intensity	1.69E-04
21	GO:0010027: thylakoid membrane organization	1.93E-04
22	GO:0045038: protein import into chloroplast thylakoid membrane	2.95E-04
23	GO:0042549: photosystem II stabilization	3.65E-04
24	GO:0009955: adaxial/abaxial pattern specification	4.36E-04
25	GO:1901259: chloroplast rRNA processing	4.36E-04
26	GO:0009409: response to cold	4.79E-04
27	GO:0009645: response to low light intensity stimulus	5.11E-04
28	GO:0009772: photosynthetic electron transport in photosystem II	5.11E-04
29	GO:0010196: nonphotochemical quenching	5.11E-04
30	GO:2000070: regulation of response to water deprivation	5.89E-04
31	GO:0005978: glycogen biosynthetic process	5.89E-04
32	GO:0046686: response to cadmium ion	5.94E-04
33	GO:0006096: glycolytic process	6.52E-04
34	GO:0015996: chlorophyll catabolic process	6.69E-04
35	GO:0007186: G-protein coupled receptor signaling pathway	6.69E-04
36	GO:0019430: removal of superoxide radicals	6.69E-04
37	GO:0006754: ATP biosynthetic process	7.52E-04
38	GO:0006098: pentose-phosphate shunt	7.52E-04
39	GO:0010205: photoinhibition	8.38E-04
40	GO:0010380: regulation of chlorophyll biosynthetic process	8.38E-04
41	GO:0019684: photosynthesis, light reaction	1.01E-03
42	GO:0009073: aromatic amino acid family biosynthetic process	1.01E-03
43	GO:0043085: positive regulation of catalytic activity	1.01E-03
44	GO:0045037: protein import into chloroplast stroma	1.11E-03
45	GO:0006094: gluconeogenesis	1.20E-03
46	GO:0009767: photosynthetic electron transport chain	1.20E-03
47	GO:0019253: reductive pentose-phosphate cycle	1.30E-03
48	GO:0061077: chaperone-mediated protein folding	1.83E-03
49	GO:0009658: chloroplast organization	1.99E-03
50	GO:0010182: sugar mediated signaling pathway	2.55E-03
51	GO:0015986: ATP synthesis coupled proton transport	2.68E-03
52	GO:0019252: starch biosynthetic process	2.80E-03
53	GO:0009791: post-embryonic development	2.80E-03
54	GO:0015995: chlorophyll biosynthetic process	4.21E-03
55	GO:0016311: dephosphorylation	4.36E-03
56	GO:0009735: response to cytokinin	5.83E-03
57	GO:0009744: response to sucrose	6.32E-03
58	GO:0009644: response to high light intensity	6.67E-03
59	GO:0006414: translational elongation	9.50E-03
60	GO:0009845: seed germination	1.23E-02
61	GO:0042744: hydrogen peroxide catabolic process	1.28E-02
62	GO:0042742: defense response to bacterium	1.29E-02
63	GO:0042254: ribosome biogenesis	2.02E-02
64	GO:0045454: cell redox homeostasis	2.64E-02
65	GO:0006281: DNA repair	3.07E-02
66	GO:0009416: response to light stimulus	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0003959: NADPH dehydrogenase activity	1.49E-06
2	GO:0019843: rRNA binding	1.76E-06
3	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	2.53E-05
4	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.53E-05
5	GO:0010242: oxygen evolving activity	2.53E-05
6	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.53E-05
7	GO:0008266: poly(U) RNA binding	3.12E-05
8	GO:0031409: pigment binding	4.09E-05
9	GO:0004614: phosphoglucomutase activity	6.44E-05
10	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	6.44E-05
11	GO:0016630: protochlorophyllide reductase activity	6.44E-05
12	GO:0004324: ferredoxin-NADP+ reductase activity	1.13E-04
13	GO:0003913: DNA photolyase activity	1.13E-04
14	GO:0003735: structural constituent of ribosome	1.30E-04
15	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.69E-04
16	GO:0016168: chlorophyll binding	2.04E-04
17	GO:0016279: protein-lysine N-methyltransferase activity	2.30E-04
18	GO:0003746: translation elongation factor activity	3.23E-04
19	GO:0004332: fructose-bisphosphate aldolase activity	3.65E-04
20	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.36E-04
21	GO:0009881: photoreceptor activity	5.11E-04
22	GO:0008135: translation factor activity, RNA binding	6.69E-04
23	GO:0030234: enzyme regulator activity	9.24E-04
24	GO:0008047: enzyme activator activity	9.24E-04
25	GO:0005528: FK506 binding	1.61E-03
26	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.55E-03
27	GO:0004791: thioredoxin-disulfide reductase activity	2.68E-03
28	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.21E-03
29	GO:0003993: acid phosphatase activity	5.47E-03
30	GO:0050661: NADP binding	5.81E-03
31	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.04E-03
32	GO:0051287: NAD binding	7.22E-03
33	GO:0005509: calcium ion binding	1.19E-02
34	GO:0016491: oxidoreductase activity	1.71E-02
35	GO:0000287: magnesium ion binding	1.97E-02
36	GO:0003924: GTPase activity	3.07E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.31E-30
2	GO:0009535: chloroplast thylakoid membrane	1.44E-29
3	GO:0009579: thylakoid	6.43E-27
4	GO:0009534: chloroplast thylakoid	7.83E-25
5	GO:0009570: chloroplast stroma	8.18E-20
6	GO:0009941: chloroplast envelope	2.09E-19
7	GO:0009543: chloroplast thylakoid lumen	4.19E-10
8	GO:0030095: chloroplast photosystem II	9.22E-10
9	GO:0009538: photosystem I reaction center	2.01E-08
10	GO:0010287: plastoglobule	2.65E-08
11	GO:0031977: thylakoid lumen	2.04E-07
12	GO:0010319: stromule	3.40E-06
13	GO:0009782: photosystem I antenna complex	2.53E-05
14	GO:0009783: photosystem II antenna complex	2.53E-05
15	GO:0009654: photosystem II oxygen evolving complex	5.21E-05
16	GO:0048046: apoplast	6.10E-05
17	GO:0009522: photosystem I	1.11E-04
18	GO:0009528: plastid inner membrane	1.13E-04
19	GO:0019898: extrinsic component of membrane	1.20E-04
20	GO:0009544: chloroplast ATP synthase complex	2.30E-04
21	GO:0009527: plastid outer membrane	2.30E-04
22	GO:0015934: large ribosomal subunit	2.94E-04
23	GO:0055035: plastid thylakoid membrane	2.95E-04
24	GO:0005840: ribosome	3.21E-04
25	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.65E-04
26	GO:0016020: membrane	5.15E-04
27	GO:0005763: mitochondrial small ribosomal subunit	7.52E-04
28	GO:0009508: plastid chromosome	1.20E-03
29	GO:0000312: plastid small ribosomal subunit	1.30E-03
30	GO:0030076: light-harvesting complex	1.40E-03
31	GO:0015935: small ribosomal subunit	1.83E-03
32	GO:0009532: plastid stroma	1.83E-03
33	GO:0031969: chloroplast membrane	2.46E-03
34	GO:0009523: photosystem II	2.80E-03
35	GO:0009295: nucleoid	3.48E-03
36	GO:0009707: chloroplast outer membrane	4.52E-03
37	GO:0005759: mitochondrial matrix	1.37E-02
38	GO:0022627: cytosolic small ribosomal subunit	1.79E-02
39	GO:0022626: cytosolic ribosome	4.47E-02