Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G37600

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070918: production of small RNA involved in gene silencing by RNA0.00E+00
2GO:0007530: sex determination0.00E+00
3GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
4GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
5GO:0090239: regulation of histone H4 acetylation0.00E+00
6GO:0000740: nuclear membrane fusion0.00E+00
7GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
8GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
9GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
10GO:0046487: glyoxylate metabolic process0.00E+00
11GO:0006412: translation9.01E-151
12GO:0042254: ribosome biogenesis2.12E-61
13GO:0000027: ribosomal large subunit assembly1.75E-12
14GO:0000028: ribosomal small subunit assembly4.26E-08
15GO:0006511: ubiquitin-dependent protein catabolic process2.50E-07
16GO:0009735: response to cytokinin4.91E-06
17GO:0006626: protein targeting to mitochondrion3.75E-05
18GO:0009955: adaxial/abaxial pattern specification4.44E-05
19GO:1902626: assembly of large subunit precursor of preribosome9.50E-05
20GO:0002181: cytoplasmic translation9.50E-05
21GO:0006414: translational elongation1.86E-04
22GO:0006241: CTP biosynthetic process1.94E-04
23GO:0006165: nucleoside diphosphate phosphorylation1.94E-04
24GO:0006228: UTP biosynthetic process1.94E-04
25GO:0006183: GTP biosynthetic process3.24E-04
26GO:0006820: anion transport4.15E-04
27GO:0009793: embryo development ending in seed dormancy6.47E-04
28GO:0043248: proteasome assembly6.65E-04
29GO:0032365: intracellular lipid transport8.48E-04
30GO:0006407: rRNA export from nucleus8.48E-04
31GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)8.48E-04
32GO:0006475: internal protein amino acid acetylation8.48E-04
33GO:1990258: histone glutamine methylation8.48E-04
34GO:0015801: aromatic amino acid transport8.48E-04
35GO:0017198: N-terminal peptidyl-serine acetylation8.48E-04
36GO:0030490: maturation of SSU-rRNA8.48E-04
37GO:2001006: regulation of cellulose biosynthetic process8.48E-04
38GO:0000494: box C/D snoRNA 3'-end processing8.48E-04
39GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)8.48E-04
40GO:0018002: N-terminal peptidyl-glutamic acid acetylation8.48E-04
41GO:0051603: proteolysis involved in cellular protein catabolic process9.59E-04
42GO:0061077: chaperone-mediated protein folding1.13E-03
43GO:0015786: UDP-glucose transport1.84E-03
44GO:0051788: response to misfolded protein1.84E-03
45GO:0006432: phenylalanyl-tRNA aminoacylation1.84E-03
46GO:0045905: positive regulation of translational termination1.84E-03
47GO:0071668: plant-type cell wall assembly1.84E-03
48GO:0045901: positive regulation of translational elongation1.84E-03
49GO:0045041: protein import into mitochondrial intermembrane space1.84E-03
50GO:0048569: post-embryonic animal organ development1.84E-03
51GO:0043981: histone H4-K5 acetylation1.84E-03
52GO:0006452: translational frameshifting1.84E-03
53GO:0010198: synergid death1.84E-03
54GO:0000413: protein peptidyl-prolyl isomerization1.94E-03
55GO:0098656: anion transmembrane transport2.05E-03
56GO:0009245: lipid A biosynthetic process2.05E-03
57GO:0046686: response to cadmium ion2.16E-03
58GO:0000398: mRNA splicing, via spliceosome2.18E-03
59GO:0000387: spliceosomal snRNP assembly2.43E-03
60GO:0009651: response to salt stress2.47E-03
61GO:0008283: cell proliferation2.56E-03
62GO:0046168: glycerol-3-phosphate catabolic process3.05E-03
63GO:0009150: purine ribonucleotide metabolic process3.05E-03
64GO:1904278: positive regulation of wax biosynthetic process3.05E-03
65GO:0045793: positive regulation of cell size3.05E-03
66GO:0015783: GDP-fucose transport3.05E-03
67GO:0034227: tRNA thio-modification3.05E-03
68GO:0042256: mature ribosome assembly3.05E-03
69GO:0010452: histone H3-K36 methylation3.05E-03
70GO:0072334: UDP-galactose transmembrane transport4.44E-03
71GO:0006072: glycerol-3-phosphate metabolic process4.44E-03
72GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity4.44E-03
73GO:0006164: purine nucleotide biosynthetic process4.44E-03
74GO:0006168: adenine salvage4.44E-03
75GO:0009558: embryo sac cellularization4.44E-03
76GO:0001676: long-chain fatty acid metabolic process4.44E-03
77GO:0046513: ceramide biosynthetic process4.44E-03
78GO:0032877: positive regulation of DNA endoreduplication4.44E-03
79GO:0046836: glycolipid transport4.44E-03
80GO:0006166: purine ribonucleoside salvage4.44E-03
81GO:0070301: cellular response to hydrogen peroxide4.44E-03
82GO:0051085: chaperone mediated protein folding requiring cofactor4.44E-03
83GO:0006107: oxaloacetate metabolic process4.44E-03
84GO:0009647: skotomorphogenesis4.44E-03
85GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process5.44E-03
86GO:0010363: regulation of plant-type hypersensitive response6.01E-03
87GO:0006621: protein retention in ER lumen6.01E-03
88GO:0006221: pyrimidine nucleotide biosynthetic process6.01E-03
89GO:0044205: 'de novo' UMP biosynthetic process6.01E-03
90GO:0032366: intracellular sterol transport6.01E-03
91GO:0009165: nucleotide biosynthetic process6.01E-03
92GO:0051781: positive regulation of cell division6.01E-03
93GO:0042274: ribosomal small subunit biogenesis6.01E-03
94GO:0010387: COP9 signalosome assembly6.01E-03
95GO:0030150: protein import into mitochondrial matrix6.78E-03
96GO:0006406: mRNA export from nucleus6.78E-03
97GO:0006289: nucleotide-excision repair6.78E-03
98GO:0006487: protein N-linked glycosylation6.78E-03
99GO:0009116: nucleoside metabolic process6.78E-03
100GO:0071493: cellular response to UV-B7.74E-03
101GO:0031167: rRNA methylation7.74E-03
102GO:0036065: fucosylation7.74E-03
103GO:1902183: regulation of shoot apical meristem development7.74E-03
104GO:0044209: AMP salvage7.74E-03
105GO:0051568: histone H3-K4 methylation9.64E-03
106GO:0000470: maturation of LSU-rRNA9.64E-03
107GO:0045040: protein import into mitochondrial outer membrane9.64E-03
108GO:0000911: cytokinesis by cell plate formation1.17E-02
109GO:0009612: response to mechanical stimulus1.17E-02
110GO:0006458: 'de novo' protein folding1.17E-02
111GO:0042026: protein refolding1.17E-02
112GO:0000054: ribosomal subunit export from nucleus1.17E-02
113GO:0009554: megasporogenesis1.17E-02
114GO:0016444: somatic cell DNA recombination1.17E-02
115GO:0009648: photoperiodism1.17E-02
116GO:1901001: negative regulation of response to salt stress1.17E-02
117GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c1.39E-02
118GO:0000338: protein deneddylation1.39E-02
119GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process1.39E-02
120GO:0032880: regulation of protein localization1.39E-02
121GO:0048528: post-embryonic root development1.39E-02
122GO:1900056: negative regulation of leaf senescence1.39E-02
123GO:0009965: leaf morphogenesis1.40E-02
124GO:0006413: translational initiation1.45E-02
125GO:0010183: pollen tube guidance1.58E-02
126GO:0009690: cytokinin metabolic process1.62E-02
127GO:0050821: protein stabilization1.62E-02
128GO:0031540: regulation of anthocyanin biosynthetic process1.62E-02
129GO:0009231: riboflavin biosynthetic process1.62E-02
130GO:0000302: response to reactive oxygen species1.69E-02
131GO:0010193: response to ozone1.69E-02
132GO:0006635: fatty acid beta-oxidation1.69E-02
133GO:0001510: RNA methylation1.86E-02
134GO:0006526: arginine biosynthetic process1.86E-02
135GO:0010204: defense response signaling pathway, resistance gene-independent1.86E-02
136GO:0044030: regulation of DNA methylation1.86E-02
137GO:0009808: lignin metabolic process1.86E-02
138GO:0022900: electron transport chain1.86E-02
139GO:0006189: 'de novo' IMP biosynthetic process2.12E-02
140GO:0048589: developmental growth2.12E-02
141GO:0009060: aerobic respiration2.12E-02
142GO:0015780: nucleotide-sugar transport2.12E-02
143GO:0010449: root meristem growth2.39E-02
144GO:0010267: production of ta-siRNAs involved in RNA interference2.39E-02
145GO:0042761: very long-chain fatty acid biosynthetic process2.39E-02
146GO:0043069: negative regulation of programmed cell death2.66E-02
147GO:0016441: posttranscriptional gene silencing2.66E-02
148GO:0006913: nucleocytoplasmic transport2.95E-02
149GO:0015770: sucrose transport2.95E-02
150GO:0048229: gametophyte development2.95E-02
151GO:0010015: root morphogenesis2.95E-02
152GO:0016925: protein sumoylation3.25E-02
153GO:0008361: regulation of cell size3.25E-02
154GO:0006790: sulfur compound metabolic process3.25E-02
155GO:0010628: positive regulation of gene expression3.57E-02
156GO:0010102: lateral root morphogenesis3.57E-02
157GO:0006108: malate metabolic process3.57E-02
158GO:0006807: nitrogen compound metabolic process3.57E-02
159GO:2000028: regulation of photoperiodism, flowering3.57E-02
160GO:0010043: response to zinc ion3.72E-02
161GO:0010020: chloroplast fission3.89E-02
162GO:0000724: double-strand break repair via homologous recombination3.89E-02
163GO:0006446: regulation of translational initiation3.89E-02
164GO:0048467: gynoecium development3.89E-02
165GO:0009409: response to cold3.97E-02
166GO:0009853: photorespiration4.07E-02
167GO:0009969: xyloglucan biosynthetic process4.22E-02
168GO:0006457: protein folding4.53E-02
RankGO TermAdjusted P value
1GO:0050152: omega-amidase activity0.00E+00
2GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
3GO:0004746: riboflavin synthase activity0.00E+00
4GO:0004055: argininosuccinate synthase activity0.00E+00
5GO:0004151: dihydroorotase activity0.00E+00
6GO:0004056: argininosuccinate lyase activity0.00E+00
7GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
8GO:0003735: structural constituent of ribosome1.04E-193
9GO:0003729: mRNA binding2.82E-36
10GO:0004298: threonine-type endopeptidase activity1.58E-19
11GO:0019843: rRNA binding1.38E-14
12GO:0008233: peptidase activity3.20E-09
13GO:0003746: translation elongation factor activity4.49E-05
14GO:0015288: porin activity9.69E-05
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.27E-04
16GO:0008308: voltage-gated anion channel activity1.33E-04
17GO:0004550: nucleoside diphosphate kinase activity1.94E-04
18GO:0008097: 5S rRNA binding1.94E-04
19GO:0004576: oligosaccharyl transferase activity3.24E-04
20GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity4.80E-04
21GO:0031177: phosphopantetheine binding6.65E-04
22GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity8.48E-04
23GO:0005080: protein kinase C binding8.48E-04
24GO:1990190: peptide-glutamate-N-acetyltransferase activity8.48E-04
25GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity8.48E-04
26GO:1990259: histone-glutamine methyltransferase activity8.48E-04
27GO:0035614: snRNA stem-loop binding8.48E-04
28GO:0000824: inositol tetrakisphosphate 3-kinase activity8.48E-04
29GO:0047326: inositol tetrakisphosphate 5-kinase activity8.48E-04
30GO:1990189: peptide-serine-N-acetyltransferase activity8.48E-04
31GO:0000035: acyl binding8.77E-04
32GO:0003723: RNA binding1.01E-03
33GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.20E-03
34GO:0043022: ribosome binding1.39E-03
35GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.39E-03
36GO:1990585: hydroxyproline O-arabinosyltransferase activity1.84E-03
37GO:0032934: sterol binding1.84E-03
38GO:0004826: phenylalanine-tRNA ligase activity1.84E-03
39GO:0030619: U1 snRNA binding1.84E-03
40GO:0050291: sphingosine N-acyltransferase activity1.84E-03
41GO:0015173: aromatic amino acid transmembrane transporter activity1.84E-03
42GO:0001055: RNA polymerase II activity2.43E-03
43GO:0008649: rRNA methyltransferase activity3.05E-03
44GO:0070181: small ribosomal subunit rRNA binding3.05E-03
45GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity3.05E-03
46GO:0005457: GDP-fucose transmembrane transporter activity3.05E-03
47GO:0070180: large ribosomal subunit rRNA binding3.05E-03
48GO:0008430: selenium binding3.05E-03
49GO:0001054: RNA polymerase I activity3.29E-03
50GO:0044183: protein binding involved in protein folding3.29E-03
51GO:0001056: RNA polymerase III activity3.78E-03
52GO:0015266: protein channel activity4.30E-03
53GO:0003999: adenine phosphoribosyltransferase activity4.44E-03
54GO:0005460: UDP-glucose transmembrane transporter activity4.44E-03
55GO:0047627: adenylylsulfatase activity4.44E-03
56GO:0017089: glycolipid transporter activity4.44E-03
57GO:0004749: ribose phosphate diphosphokinase activity4.44E-03
58GO:0010011: auxin binding6.01E-03
59GO:0051861: glycolipid binding6.01E-03
60GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds6.01E-03
61GO:0070628: proteasome binding6.01E-03
62GO:0046923: ER retention sequence binding6.01E-03
63GO:0005528: FK506 binding6.78E-03
64GO:0050897: cobalt ion binding7.70E-03
65GO:0005275: amine transmembrane transporter activity7.74E-03
66GO:0031386: protein tag7.74E-03
67GO:0005459: UDP-galactose transmembrane transporter activity7.74E-03
68GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity9.64E-03
69GO:0031593: polyubiquitin binding9.64E-03
70GO:0102391: decanoate--CoA ligase activity1.17E-02
71GO:0051920: peroxiredoxin activity1.17E-02
72GO:0030515: snoRNA binding1.39E-02
73GO:0004467: long-chain fatty acid-CoA ligase activity1.39E-02
74GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity1.39E-02
75GO:0005338: nucleotide-sugar transmembrane transporter activity1.39E-02
76GO:0042162: telomeric DNA binding1.39E-02
77GO:0008121: ubiquinol-cytochrome-c reductase activity1.39E-02
78GO:0004872: receptor activity1.58E-02
79GO:0016209: antioxidant activity1.62E-02
80GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.76E-02
81GO:0000989: transcription factor activity, transcription factor binding2.12E-02
82GO:0008417: fucosyltransferase activity2.12E-02
83GO:0051082: unfolded protein binding2.75E-02
84GO:0008515: sucrose transmembrane transporter activity2.95E-02
85GO:0046961: proton-transporting ATPase activity, rotational mechanism2.95E-02
86GO:0004129: cytochrome-c oxidase activity2.95E-02
87GO:0008794: arsenate reductase (glutaredoxin) activity2.95E-02
88GO:0000049: tRNA binding3.25E-02
89GO:0031072: heat shock protein binding3.57E-02
90GO:0008266: poly(U) RNA binding3.89E-02
91GO:0004175: endopeptidase activity3.89E-02
92GO:0003697: single-stranded DNA binding4.07E-02
93GO:0051119: sugar transmembrane transporter activity4.22E-02
94GO:0003993: acid phosphatase activity4.25E-02
95GO:0051536: iron-sulfur cluster binding4.90E-02
96GO:0043130: ubiquitin binding4.90E-02
RankGO TermAdjusted P value
1GO:0043186: P granule0.00E+00
2GO:0005675: holo TFIIH complex0.00E+00
3GO:0097361: CIA complex0.00E+00
4GO:0005840: ribosome1.52E-135
5GO:0022626: cytosolic ribosome3.70E-132
6GO:0022625: cytosolic large ribosomal subunit1.59E-114
7GO:0022627: cytosolic small ribosomal subunit3.96E-79
8GO:0005829: cytosol2.31E-45
9GO:0005737: cytoplasm6.58E-38
10GO:0005730: nucleolus2.52E-37
11GO:0009506: plasmodesma3.24E-22
12GO:0015934: large ribosomal subunit7.87E-21
13GO:0005774: vacuolar membrane1.50E-20
14GO:0005839: proteasome core complex1.58E-19
15GO:0000502: proteasome complex3.64E-18
16GO:0005773: vacuole2.80E-14
17GO:0016020: membrane7.21E-12
18GO:0019773: proteasome core complex, alpha-subunit complex8.57E-12
19GO:0015935: small ribosomal subunit2.54E-10
20GO:0009507: chloroplast1.29E-07
21GO:0005618: cell wall6.50E-07
22GO:0000419: DNA-directed RNA polymerase V complex7.55E-05
23GO:0005853: eukaryotic translation elongation factor 1 complex9.50E-05
24GO:0046930: pore complex1.33E-04
25GO:0005886: plasma membrane3.84E-04
26GO:0005665: DNA-directed RNA polymerase II, core complex4.15E-04
27GO:0005732: small nucleolar ribonucleoprotein complex4.69E-04
28GO:0008250: oligosaccharyltransferase complex4.80E-04
29GO:0019774: proteasome core complex, beta-subunit complex8.48E-04
30GO:0030686: 90S preribosome8.48E-04
31GO:0005758: mitochondrial intermembrane space8.84E-04
32GO:0005741: mitochondrial outer membrane1.13E-03
33GO:0005742: mitochondrial outer membrane translocase complex1.70E-03
34GO:0035145: exon-exon junction complex1.84E-03
35GO:0031415: NatA complex1.84E-03
36GO:0005697: telomerase holoenzyme complex1.84E-03
37GO:0005685: U1 snRNP2.05E-03
38GO:0005736: DNA-directed RNA polymerase I complex2.05E-03
39GO:0005666: DNA-directed RNA polymerase III complex2.43E-03
40GO:0071011: precatalytic spliceosome2.43E-03
41GO:0015030: Cajal body2.43E-03
42GO:0000418: DNA-directed RNA polymerase IV complex2.84E-03
43GO:0034719: SMN-Sm protein complex3.05E-03
44GO:0000439: core TFIIH complex3.05E-03
45GO:0046861: glyoxysomal membrane3.05E-03
46GO:0071013: catalytic step 2 spliceosome3.29E-03
47GO:0048471: perinuclear region of cytoplasm3.29E-03
48GO:0008541: proteasome regulatory particle, lid subcomplex3.29E-03
49GO:0019013: viral nucleocapsid4.30E-03
50GO:0009331: glycerol-3-phosphate dehydrogenase complex4.44E-03
51GO:0033180: proton-transporting V-type ATPase, V1 domain4.44E-03
52GO:1990726: Lsm1-7-Pat1 complex4.44E-03
53GO:0005783: endoplasmic reticulum4.63E-03
54GO:0005788: endoplasmic reticulum lumen4.87E-03
55GO:0005747: mitochondrial respiratory chain complex I5.52E-03
56GO:0000445: THO complex part of transcription export complex6.01E-03
57GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)6.01E-03
58GO:0016593: Cdc73/Paf1 complex6.01E-03
59GO:0005682: U5 snRNP6.01E-03
60GO:0045271: respiratory chain complex I7.50E-03
61GO:0070469: respiratory chain7.50E-03
62GO:0005687: U4 snRNP7.74E-03
63GO:0097526: spliceosomal tri-snRNP complex7.74E-03
64GO:0005746: mitochondrial respiratory chain7.74E-03
65GO:0031428: box C/D snoRNP complex9.64E-03
66GO:0005689: U12-type spliceosomal complex1.17E-02
67GO:0005762: mitochondrial large ribosomal subunit1.17E-02
68GO:0005801: cis-Golgi network1.17E-02
69GO:0016272: prefoldin complex1.17E-02
70GO:0000347: THO complex1.39E-02
71GO:0005777: peroxisome1.45E-02
72GO:0071004: U2-type prespliceosome1.62E-02
73GO:0045273: respiratory chain complex II1.62E-02
74GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.62E-02
75GO:0005688: U6 snRNP1.62E-02
76GO:0046540: U4/U6 x U5 tri-snRNP complex1.86E-02
77GO:0009514: glyoxysome1.86E-02
78GO:0008180: COP9 signalosome2.12E-02
79GO:0031090: organelle membrane2.12E-02
80GO:0005763: mitochondrial small ribosomal subunit2.12E-02
81GO:0005681: spliceosomal complex2.18E-02
82GO:0005686: U2 snRNP2.66E-02
83GO:0005852: eukaryotic translation initiation factor 3 complex2.95E-02
84GO:0009536: plastid3.21E-02
85GO:0031307: integral component of mitochondrial outer membrane3.25E-02
86GO:0032040: small-subunit processome3.25E-02
87GO:0005654: nucleoplasm3.52E-02
88GO:0009508: plastid chromosome3.57E-02
89GO:0005750: mitochondrial respiratory chain complex III3.89E-02
90GO:0005753: mitochondrial proton-transporting ATP synthase complex4.22E-02
91GO:0005769: early endosome4.55E-02
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Gene type



Gene DE type