Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G36620

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009264: deoxyribonucleotide catabolic process0.00E+00
2GO:0046487: glyoxylate metabolic process0.00E+00
3GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
4GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
5GO:0090239: regulation of histone H4 acetylation0.00E+00
6GO:0001881: receptor recycling0.00E+00
7GO:0000740: nuclear membrane fusion0.00E+00
8GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
9GO:0044843: cell cycle G1/S phase transition0.00E+00
10GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
11GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
12GO:0006412: translation1.01E-157
13GO:0042254: ribosome biogenesis1.00E-59
14GO:0000027: ribosomal large subunit assembly9.49E-11
15GO:0006626: protein targeting to mitochondrion3.47E-08
16GO:0000028: ribosomal small subunit assembly4.12E-08
17GO:0009735: response to cytokinin4.62E-06
18GO:0009967: positive regulation of signal transduction2.96E-05
19GO:0006511: ubiquitin-dependent protein catabolic process3.28E-05
20GO:0009955: adaxial/abaxial pattern specification4.35E-05
21GO:0006414: translational elongation5.01E-05
22GO:0002181: cytoplasmic translation9.38E-05
23GO:0046686: response to cadmium ion1.24E-04
24GO:0009651: response to salt stress2.12E-04
25GO:0042274: ribosomal small subunit biogenesis3.19E-04
26GO:0006820: anion transport4.09E-04
27GO:0000398: mRNA splicing, via spliceosome5.15E-04
28GO:0043248: proteasome assembly6.58E-04
29GO:0045040: protein import into mitochondrial outer membrane6.58E-04
30GO:2001006: regulation of cellulose biosynthetic process8.42E-04
31GO:0006434: seryl-tRNA aminoacylation8.42E-04
32GO:0000494: box C/D snoRNA 3'-end processing8.42E-04
33GO:0018002: N-terminal peptidyl-glutamic acid acetylation8.42E-04
34GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)8.42E-04
35GO:0032365: intracellular lipid transport8.42E-04
36GO:0006407: rRNA export from nucleus8.42E-04
37GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)8.42E-04
38GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process8.42E-04
39GO:1901349: glucosinolate transport8.42E-04
40GO:0006475: internal protein amino acid acetylation8.42E-04
41GO:0090449: phloem glucosinolate loading8.42E-04
42GO:0015801: aromatic amino acid transport8.42E-04
43GO:1990258: histone glutamine methylation8.42E-04
44GO:0017198: N-terminal peptidyl-serine acetylation8.42E-04
45GO:0030490: maturation of SSU-rRNA8.42E-04
46GO:0030150: protein import into mitochondrial matrix8.72E-04
47GO:0051603: proteolysis involved in cellular protein catabolic process9.39E-04
48GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c1.10E-03
49GO:0061077: chaperone-mediated protein folding1.12E-03
50GO:0010204: defense response signaling pathway, resistance gene-independent1.68E-03
51GO:0048569: post-embryonic animal organ development1.83E-03
52GO:0043981: histone H4-K5 acetylation1.83E-03
53GO:0006452: translational frameshifting1.83E-03
54GO:0010198: synergid death1.83E-03
55GO:0015786: UDP-glucose transport1.83E-03
56GO:0006432: phenylalanyl-tRNA aminoacylation1.83E-03
57GO:0051788: response to misfolded protein1.83E-03
58GO:0045905: positive regulation of translational termination1.83E-03
59GO:0071668: plant-type cell wall assembly1.83E-03
60GO:0045901: positive regulation of translational elongation1.83E-03
61GO:0045041: protein import into mitochondrial intermembrane space1.83E-03
62GO:0098656: anion transmembrane transport2.02E-03
63GO:0009245: lipid A biosynthetic process2.02E-03
64GO:0000387: spliceosomal snRNP assembly2.40E-03
65GO:0090506: axillary shoot meristem initiation3.03E-03
66GO:1902626: assembly of large subunit precursor of preribosome3.03E-03
67GO:0046168: glycerol-3-phosphate catabolic process3.03E-03
68GO:0009150: purine ribonucleotide metabolic process3.03E-03
69GO:0008333: endosome to lysosome transport3.03E-03
70GO:0045793: positive regulation of cell size3.03E-03
71GO:0015783: GDP-fucose transport3.03E-03
72GO:0034227: tRNA thio-modification3.03E-03
73GO:0010476: gibberellin mediated signaling pathway3.03E-03
74GO:0042256: mature ribosome assembly3.03E-03
75GO:0006364: rRNA processing3.99E-03
76GO:0070301: cellular response to hydrogen peroxide4.41E-03
77GO:0051085: chaperone mediated protein folding requiring cofactor4.41E-03
78GO:0046653: tetrahydrofolate metabolic process4.41E-03
79GO:0009647: skotomorphogenesis4.41E-03
80GO:0006241: CTP biosynthetic process4.41E-03
81GO:0072334: UDP-galactose transmembrane transport4.41E-03
82GO:0006072: glycerol-3-phosphate metabolic process4.41E-03
83GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity4.41E-03
84GO:0006168: adenine salvage4.41E-03
85GO:0006165: nucleoside diphosphate phosphorylation4.41E-03
86GO:0006228: UTP biosynthetic process4.41E-03
87GO:0006164: purine nucleotide biosynthetic process4.41E-03
88GO:0009558: embryo sac cellularization4.41E-03
89GO:0001676: long-chain fatty acid metabolic process4.41E-03
90GO:0046513: ceramide biosynthetic process4.41E-03
91GO:0032877: positive regulation of DNA endoreduplication4.41E-03
92GO:0046836: glycolipid transport4.41E-03
93GO:0006166: purine ribonucleoside salvage4.41E-03
94GO:0006446: regulation of translational initiation4.81E-03
95GO:0051781: positive regulation of cell division5.97E-03
96GO:0006183: GTP biosynthetic process5.97E-03
97GO:0010363: regulation of plant-type hypersensitive response5.97E-03
98GO:0006621: protein retention in ER lumen5.97E-03
99GO:2000032: regulation of secondary shoot formation5.97E-03
100GO:0009165: nucleotide biosynthetic process5.97E-03
101GO:0009116: nucleoside metabolic process6.70E-03
102GO:0006289: nucleotide-excision repair6.70E-03
103GO:0006487: protein N-linked glycosylation6.70E-03
104GO:0009793: embryo development ending in seed dormancy6.99E-03
105GO:0010043: response to zinc ion7.58E-03
106GO:0045116: protein neddylation7.68E-03
107GO:0071493: cellular response to UV-B7.68E-03
108GO:0031167: rRNA methylation7.68E-03
109GO:0036065: fucosylation7.68E-03
110GO:0007029: endoplasmic reticulum organization7.68E-03
111GO:1902183: regulation of shoot apical meristem development7.68E-03
112GO:0044209: AMP salvage7.68E-03
113GO:0048511: rhythmic process8.16E-03
114GO:0000470: maturation of LSU-rRNA9.56E-03
115GO:0001731: formation of translation preinitiation complex9.56E-03
116GO:0071215: cellular response to abscisic acid stimulus9.78E-03
117GO:0040007: growth9.78E-03
118GO:1901001: negative regulation of response to salt stress1.16E-02
119GO:0009612: response to mechanical stimulus1.16E-02
120GO:0006458: 'de novo' protein folding1.16E-02
121GO:0000911: cytokinesis by cell plate formation1.16E-02
122GO:0042026: protein refolding1.16E-02
123GO:0000245: spliceosomal complex assembly1.16E-02
124GO:0009648: photoperiodism1.16E-02
125GO:0042744: hydrogen peroxide catabolic process1.18E-02
126GO:0000413: protein peptidyl-prolyl isomerization1.25E-02
127GO:0048528: post-embryonic root development1.37E-02
128GO:1900056: negative regulation of leaf senescence1.37E-02
129GO:0009965: leaf morphogenesis1.37E-02
130GO:0009396: folic acid-containing compound biosynthetic process1.37E-02
131GO:0032880: regulation of protein localization1.37E-02
132GO:0006413: translational initiation1.42E-02
133GO:0009749: response to glucose1.56E-02
134GO:0009690: cytokinin metabolic process1.60E-02
135GO:0050821: protein stabilization1.60E-02
136GO:0031540: regulation of anthocyanin biosynthetic process1.60E-02
137GO:0080156: mitochondrial mRNA modification1.67E-02
138GO:0000302: response to reactive oxygen species1.67E-02
139GO:0006635: fatty acid beta-oxidation1.67E-02
140GO:0009409: response to cold1.77E-02
141GO:0022900: electron transport chain1.85E-02
142GO:0001558: regulation of cell growth1.85E-02
143GO:0001510: RNA methylation1.85E-02
144GO:0006526: arginine biosynthetic process1.85E-02
145GO:0009808: lignin metabolic process1.85E-02
146GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.87E-02
147GO:0006189: 'de novo' IMP biosynthetic process2.10E-02
148GO:0048589: developmental growth2.10E-02
149GO:0009060: aerobic respiration2.10E-02
150GO:0015780: nucleotide-sugar transport2.10E-02
151GO:0042761: very long-chain fatty acid biosynthetic process2.37E-02
152GO:0035999: tetrahydrofolate interconversion2.37E-02
153GO:0009870: defense response signaling pathway, resistance gene-dependent2.64E-02
154GO:0043069: negative regulation of programmed cell death2.64E-02
155GO:0010015: root morphogenesis2.93E-02
156GO:0006913: nucleocytoplasmic transport2.93E-02
157GO:0015770: sucrose transport2.93E-02
158GO:0008361: regulation of cell size3.23E-02
159GO:0006790: sulfur compound metabolic process3.23E-02
160GO:0016925: protein sumoylation3.23E-02
161GO:0015031: protein transport3.38E-02
162GO:0010102: lateral root morphogenesis3.54E-02
163GO:2000028: regulation of photoperiodism, flowering3.54E-02
164GO:0048467: gynoecium development3.85E-02
165GO:0007034: vacuolar transport3.85E-02
166GO:0002237: response to molecule of bacterial origin3.85E-02
167GO:0009845: seed germination3.95E-02
168GO:0009853: photorespiration4.02E-02
169GO:0009969: xyloglucan biosynthetic process4.18E-02
170GO:0006406: mRNA export from nucleus4.86E-02
RankGO TermAdjusted P value
1GO:0016881: acid-amino acid ligase activity0.00E+00
2GO:0030272: 5-formyltetrahydrofolate cyclo-ligase activity0.00E+00
3GO:0052873: FMN reductase (NADPH) activity0.00E+00
4GO:0004055: argininosuccinate synthase activity0.00E+00
5GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
6GO:0008752: FMN reductase activity0.00E+00
7GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
8GO:0003735: structural constituent of ribosome5.76E-202
9GO:0003729: mRNA binding3.16E-41
10GO:0004298: threonine-type endopeptidase activity8.25E-14
11GO:0019843: rRNA binding2.50E-13
12GO:0008233: peptidase activity2.97E-08
13GO:0003746: translation elongation factor activity3.91E-06
14GO:0005078: MAP-kinase scaffold activity2.96E-05
15GO:0015288: porin activity9.52E-05
16GO:0008308: voltage-gated anion channel activity1.30E-04
17GO:0008097: 5S rRNA binding1.91E-04
18GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.01E-04
19GO:0004576: oligosaccharyl transferase activity3.19E-04
20GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity4.75E-04
21GO:0031177: phosphopantetheine binding6.58E-04
22GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.83E-04
23GO:0000824: inositol tetrakisphosphate 3-kinase activity8.42E-04
24GO:0047326: inositol tetrakisphosphate 5-kinase activity8.42E-04
25GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity8.42E-04
26GO:1990189: peptide-serine-N-acetyltransferase activity8.42E-04
27GO:0004828: serine-tRNA ligase activity8.42E-04
28GO:0005080: protein kinase C binding8.42E-04
29GO:1990190: peptide-glutamate-N-acetyltransferase activity8.42E-04
30GO:0090448: glucosinolate:proton symporter activity8.42E-04
31GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity8.42E-04
32GO:1990259: histone-glutamine methyltransferase activity8.42E-04
33GO:0035614: snRNA stem-loop binding8.42E-04
34GO:0000035: acyl binding8.68E-04
35GO:0008121: ubiquinol-cytochrome-c reductase activity1.10E-03
36GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.38E-03
37GO:0043022: ribosome binding1.38E-03
38GO:0015173: aromatic amino acid transmembrane transporter activity1.83E-03
39GO:0004750: ribulose-phosphate 3-epimerase activity1.83E-03
40GO:0032934: sterol binding1.83E-03
41GO:0004826: phenylalanine-tRNA ligase activity1.83E-03
42GO:0030619: U1 snRNA binding1.83E-03
43GO:0004634: phosphopyruvate hydratase activity1.83E-03
44GO:0050291: sphingosine N-acyltransferase activity1.83E-03
45GO:0004618: phosphoglycerate kinase activity1.83E-03
46GO:0019781: NEDD8 activating enzyme activity1.83E-03
47GO:0003723: RNA binding1.87E-03
48GO:0001055: RNA polymerase II activity2.40E-03
49GO:0015462: ATPase-coupled protein transmembrane transporter activity3.03E-03
50GO:0003955: NAD(P)H dehydrogenase (quinone) activity3.03E-03
51GO:0008649: rRNA methyltransferase activity3.03E-03
52GO:0032947: protein complex scaffold3.03E-03
53GO:0008253: 5'-nucleotidase activity3.03E-03
54GO:0070181: small ribosomal subunit rRNA binding3.03E-03
55GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity3.03E-03
56GO:0005457: GDP-fucose transmembrane transporter activity3.03E-03
57GO:0070180: large ribosomal subunit rRNA binding3.03E-03
58GO:0001054: RNA polymerase I activity3.25E-03
59GO:0044183: protein binding involved in protein folding3.25E-03
60GO:0001056: RNA polymerase III activity3.73E-03
61GO:0015266: protein channel activity4.25E-03
62GO:0017089: glycolipid transporter activity4.41E-03
63GO:0004749: ribose phosphate diphosphokinase activity4.41E-03
64GO:0003999: adenine phosphoribosyltransferase activity4.41E-03
65GO:0005460: UDP-glucose transmembrane transporter activity4.41E-03
66GO:0004550: nucleoside diphosphate kinase activity4.41E-03
67GO:0047627: adenylylsulfatase activity4.41E-03
68GO:0051861: glycolipid binding5.97E-03
69GO:0070628: proteasome binding5.97E-03
70GO:0046923: ER retention sequence binding5.97E-03
71GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances5.97E-03
72GO:0010011: auxin binding5.97E-03
73GO:0005528: FK506 binding6.70E-03
74GO:0005459: UDP-galactose transmembrane transporter activity7.68E-03
75GO:0008641: small protein activating enzyme activity7.68E-03
76GO:0005275: amine transmembrane transporter activity7.68E-03
77GO:0031386: protein tag7.68E-03
78GO:0004601: peroxidase activity9.42E-03
79GO:0031593: polyubiquitin binding9.56E-03
80GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity9.56E-03
81GO:0004130: cytochrome-c peroxidase activity9.56E-03
82GO:0016688: L-ascorbate peroxidase activity9.56E-03
83GO:0051920: peroxiredoxin activity1.16E-02
84GO:0102391: decanoate--CoA ligase activity1.16E-02
85GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity1.37E-02
86GO:0005338: nucleotide-sugar transmembrane transporter activity1.37E-02
87GO:0008235: metalloexopeptidase activity1.37E-02
88GO:0042162: telomeric DNA binding1.37E-02
89GO:0030515: snoRNA binding1.37E-02
90GO:0004467: long-chain fatty acid-CoA ligase activity1.37E-02
91GO:0004872: receptor activity1.56E-02
92GO:0016209: antioxidant activity1.60E-02
93GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.73E-02
94GO:0003743: translation initiation factor activity2.00E-02
95GO:0008417: fucosyltransferase activity2.10E-02
96GO:0000989: transcription factor activity, transcription factor binding2.10E-02
97GO:0051082: unfolded protein binding2.71E-02
98GO:0008515: sucrose transmembrane transporter activity2.93E-02
99GO:0046961: proton-transporting ATPase activity, rotational mechanism2.93E-02
100GO:0004129: cytochrome-c oxidase activity2.93E-02
101GO:0008794: arsenate reductase (glutaredoxin) activity2.93E-02
102GO:0000049: tRNA binding3.23E-02
103GO:0031072: heat shock protein binding3.54E-02
104GO:0050897: cobalt ion binding3.67E-02
105GO:0008266: poly(U) RNA binding3.85E-02
106GO:0003697: single-stranded DNA binding4.02E-02
107GO:0051119: sugar transmembrane transporter activity4.18E-02
108GO:0003993: acid phosphatase activity4.20E-02
109GO:0043130: ubiquitin binding4.86E-02
RankGO TermAdjusted P value
1GO:0043186: P granule0.00E+00
2GO:0005675: holo TFIIH complex0.00E+00
3GO:0022626: cytosolic ribosome1.35E-142
4GO:0005840: ribosome1.51E-139
5GO:0022625: cytosolic large ribosomal subunit2.88E-121
6GO:0022627: cytosolic small ribosomal subunit1.55E-89
7GO:0005829: cytosol1.19E-51
8GO:0005737: cytoplasm5.52E-43
9GO:0005730: nucleolus4.97E-41
10GO:0009506: plasmodesma1.52E-30
11GO:0015934: large ribosomal subunit7.14E-21
12GO:0005774: vacuolar membrane9.47E-20
13GO:0016020: membrane3.47E-15
14GO:0005773: vacuole2.34E-14
15GO:0000502: proteasome complex7.16E-14
16GO:0005839: proteasome core complex8.25E-14
17GO:0015935: small ribosomal subunit2.42E-10
18GO:0005618: cell wall3.40E-08
19GO:0019773: proteasome core complex, alpha-subunit complex8.06E-08
20GO:0009507: chloroplast2.04E-07
21GO:0005853: eukaryotic translation elongation factor 1 complex5.21E-07
22GO:0005742: mitochondrial outer membrane translocase complex4.55E-06
23GO:0005741: mitochondrial outer membrane8.50E-06
24GO:0005886: plasma membrane2.88E-05
25GO:0005732: small nucleolar ribonucleoprotein complex8.78E-05
26GO:0046930: pore complex1.30E-04
27GO:0071011: precatalytic spliceosome2.21E-04
28GO:0071013: catalytic step 2 spliceosome3.40E-04
29GO:0005665: DNA-directed RNA polymerase II, core complex4.09E-04
30GO:0008250: oligosaccharyltransferase complex4.75E-04
31GO:0019013: viral nucleocapsid4.86E-04
32GO:0030686: 90S preribosome8.42E-04
33GO:0005783: endoplasmic reticulum1.16E-03
34GO:0005747: mitochondrial respiratory chain complex I1.25E-03
35GO:0031415: NatA complex1.83E-03
36GO:0000015: phosphopyruvate hydratase complex1.83E-03
37GO:0005697: telomerase holoenzyme complex1.83E-03
38GO:0005736: DNA-directed RNA polymerase I complex2.02E-03
39GO:0005685: U1 snRNP2.02E-03
40GO:0005666: DNA-directed RNA polymerase III complex2.40E-03
41GO:0015030: Cajal body2.40E-03
42GO:0005740: mitochondrial envelope2.81E-03
43GO:0000418: DNA-directed RNA polymerase IV complex2.81E-03
44GO:0000439: core TFIIH complex3.03E-03
45GO:0046861: glyoxysomal membrane3.03E-03
46GO:0034719: SMN-Sm protein complex3.03E-03
47GO:0008541: proteasome regulatory particle, lid subcomplex3.25E-03
48GO:0009331: glycerol-3-phosphate dehydrogenase complex4.41E-03
49GO:0033180: proton-transporting V-type ATPase, V1 domain4.41E-03
50GO:1990726: Lsm1-7-Pat1 complex4.41E-03
51GO:0005788: endoplasmic reticulum lumen4.80E-03
52GO:0005750: mitochondrial respiratory chain complex III4.81E-03
53GO:0005681: spliceosomal complex5.16E-03
54GO:0005682: U5 snRNP5.97E-03
55GO:0016471: vacuolar proton-transporting V-type ATPase complex5.97E-03
56GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)5.97E-03
57GO:0000419: DNA-directed RNA polymerase V complex6.03E-03
58GO:0005758: mitochondrial intermembrane space6.70E-03
59GO:0045271: respiratory chain complex I7.41E-03
60GO:0070469: respiratory chain7.41E-03
61GO:0097526: spliceosomal tri-snRNP complex7.68E-03
62GO:0005746: mitochondrial respiratory chain7.68E-03
63GO:0005687: U4 snRNP7.68E-03
64GO:0030904: retromer complex9.56E-03
65GO:0016282: eukaryotic 43S preinitiation complex9.56E-03
66GO:0031428: box C/D snoRNP complex9.56E-03
67GO:0000974: Prp19 complex9.56E-03
68GO:0005771: multivesicular body9.56E-03
69GO:0005744: mitochondrial inner membrane presequence translocase complex1.07E-02
70GO:0033290: eukaryotic 48S preinitiation complex1.16E-02
71GO:0005689: U12-type spliceosomal complex1.16E-02
72GO:0016272: prefoldin complex1.16E-02
73GO:0005762: mitochondrial large ribosomal subunit1.16E-02
74GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.60E-02
75GO:0005688: U6 snRNP1.60E-02
76GO:0071004: U2-type prespliceosome1.60E-02
77GO:0045273: respiratory chain complex II1.60E-02
78GO:0009514: glyoxysome1.85E-02
79GO:0046540: U4/U6 x U5 tri-snRNP complex1.85E-02
80GO:0031090: organelle membrane2.10E-02
81GO:0005834: heterotrimeric G-protein complex2.32E-02
82GO:0005743: mitochondrial inner membrane2.36E-02
83GO:0030529: intracellular ribonucleoprotein complex2.43E-02
84GO:0005686: U2 snRNP2.64E-02
85GO:0005852: eukaryotic translation initiation factor 3 complex2.93E-02
86GO:0048471: perinuclear region of cytoplasm2.93E-02
87GO:0032040: small-subunit processome3.23E-02
88GO:0031307: integral component of mitochondrial outer membrane3.23E-02
89GO:0009508: plastid chromosome3.54E-02
90GO:0005753: mitochondrial proton-transporting ATP synthase complex4.18E-02
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Gene type



Gene DE type