Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G36230

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0061635: regulation of protein complex stability0.00E+00
3GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
4GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0090042: tubulin deacetylation0.00E+00
7GO:0006114: glycerol biosynthetic process0.00E+00
8GO:0018023: peptidyl-lysine trimethylation0.00E+00
9GO:0006399: tRNA metabolic process0.00E+00
10GO:0070125: mitochondrial translational elongation0.00E+00
11GO:0006429: leucyl-tRNA aminoacylation0.00E+00
12GO:1905421: regulation of plant organ morphogenesis0.00E+00
13GO:0002184: cytoplasmic translational termination0.00E+00
14GO:0030155: regulation of cell adhesion0.00E+00
15GO:0015979: photosynthesis2.00E-13
16GO:0010027: thylakoid membrane organization9.99E-09
17GO:0009658: chloroplast organization3.06E-08
18GO:0032544: plastid translation3.39E-07
19GO:0009773: photosynthetic electron transport in photosystem I1.72E-06
20GO:1901259: chloroplast rRNA processing6.32E-06
21GO:0018026: peptidyl-lysine monomethylation6.76E-06
22GO:0010196: nonphotochemical quenching1.01E-05
23GO:0015995: chlorophyll biosynthetic process1.16E-05
24GO:0090391: granum assembly2.36E-05
25GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.16E-05
26GO:0006546: glycine catabolic process9.11E-05
27GO:0010021: amylopectin biosynthetic process9.11E-05
28GO:0006109: regulation of carbohydrate metabolic process9.11E-05
29GO:0010020: chloroplast fission1.17E-04
30GO:0006412: translation1.31E-04
31GO:0010236: plastoquinone biosynthetic process1.42E-04
32GO:0000476: maturation of 4.5S rRNA3.89E-04
33GO:0000967: rRNA 5'-end processing3.89E-04
34GO:0010493: Lewis a epitope biosynthetic process3.89E-04
35GO:0006438: valyl-tRNA aminoacylation3.89E-04
36GO:0043953: protein transport by the Tat complex3.89E-04
37GO:0000481: maturation of 5S rRNA3.89E-04
38GO:0042371: vitamin K biosynthetic process3.89E-04
39GO:0065002: intracellular protein transmembrane transport3.89E-04
40GO:0043686: co-translational protein modification3.89E-04
41GO:0043007: maintenance of rDNA3.89E-04
42GO:1902458: positive regulation of stomatal opening3.89E-04
43GO:0034337: RNA folding3.89E-04
44GO:0005978: glycogen biosynthetic process4.44E-04
45GO:0048564: photosystem I assembly4.44E-04
46GO:0009657: plastid organization5.43E-04
47GO:0019252: starch biosynthetic process5.82E-04
48GO:0010206: photosystem II repair6.50E-04
49GO:0019388: galactose catabolic process8.44E-04
50GO:0006432: phenylalanyl-tRNA aminoacylation8.44E-04
51GO:0006729: tetrahydrobiopterin biosynthetic process8.44E-04
52GO:1903426: regulation of reactive oxygen species biosynthetic process8.44E-04
53GO:0030388: fructose 1,6-bisphosphate metabolic process8.44E-04
54GO:0034470: ncRNA processing8.44E-04
55GO:0010275: NAD(P)H dehydrogenase complex assembly8.44E-04
56GO:0043085: positive regulation of catalytic activity1.03E-03
57GO:0018119: peptidyl-cysteine S-nitrosylation1.03E-03
58GO:0045037: protein import into chloroplast stroma1.17E-03
59GO:0009793: embryo development ending in seed dormancy1.28E-03
60GO:0016311: dephosphorylation1.32E-03
61GO:0006006: glucose metabolic process1.33E-03
62GO:0048281: inflorescence morphogenesis1.37E-03
63GO:0006954: inflammatory response1.37E-03
64GO:0006000: fructose metabolic process1.37E-03
65GO:0071492: cellular response to UV-A1.37E-03
66GO:0005977: glycogen metabolic process1.37E-03
67GO:0009817: defense response to fungus, incompatible interaction1.41E-03
68GO:0010207: photosystem II assembly1.50E-03
69GO:0019253: reductive pentose-phosphate cycle1.50E-03
70GO:0009052: pentose-phosphate shunt, non-oxidative branch1.97E-03
71GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.97E-03
72GO:0009590: detection of gravity1.97E-03
73GO:0010148: transpiration1.97E-03
74GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.97E-03
75GO:2001141: regulation of RNA biosynthetic process1.97E-03
76GO:0006020: inositol metabolic process1.97E-03
77GO:0009102: biotin biosynthetic process1.97E-03
78GO:0010239: chloroplast mRNA processing1.97E-03
79GO:0006418: tRNA aminoacylation for protein translation2.29E-03
80GO:0009735: response to cytokinin2.32E-03
81GO:0045454: cell redox homeostasis2.37E-03
82GO:0019915: lipid storage2.52E-03
83GO:0061077: chaperone-mediated protein folding2.52E-03
84GO:0009409: response to cold2.53E-03
85GO:0045727: positive regulation of translation2.65E-03
86GO:0015994: chlorophyll metabolic process2.65E-03
87GO:0006021: inositol biosynthetic process2.65E-03
88GO:0071486: cellular response to high light intensity2.65E-03
89GO:0051781: positive regulation of cell division2.65E-03
90GO:0019464: glycine decarboxylation via glycine cleavage system2.65E-03
91GO:0032259: methylation3.18E-03
92GO:0016558: protein import into peroxisome matrix3.40E-03
93GO:0032543: mitochondrial translation3.40E-03
94GO:0045038: protein import into chloroplast thylakoid membrane3.40E-03
95GO:0031365: N-terminal protein amino acid modification3.40E-03
96GO:0042631: cellular response to water deprivation3.83E-03
97GO:0006364: rRNA processing3.85E-03
98GO:0006662: glycerol ether metabolic process4.13E-03
99GO:0042793: transcription from plastid promoter4.20E-03
100GO:0010190: cytochrome b6f complex assembly4.20E-03
101GO:0046855: inositol phosphate dephosphorylation4.20E-03
102GO:0042549: photosystem II stabilization4.20E-03
103GO:0042372: phylloquinone biosynthetic process5.06E-03
104GO:0030488: tRNA methylation5.06E-03
105GO:0010189: vitamin E biosynthetic process5.06E-03
106GO:0009955: adaxial/abaxial pattern specification5.06E-03
107GO:0042254: ribosome biogenesis5.26E-03
108GO:0070370: cellular heat acclimation5.98E-03
109GO:0010103: stomatal complex morphogenesis5.98E-03
110GO:0009772: photosynthetic electron transport in photosystem II5.98E-03
111GO:0030091: protein repair6.95E-03
112GO:0009642: response to light intensity6.95E-03
113GO:0032508: DNA duplex unwinding6.95E-03
114GO:2000070: regulation of response to water deprivation6.95E-03
115GO:0006875: cellular metal ion homeostasis6.95E-03
116GO:0009231: riboflavin biosynthetic process6.95E-03
117GO:0016559: peroxisome fission6.95E-03
118GO:0001558: regulation of cell growth7.98E-03
119GO:0007186: G-protein coupled receptor signaling pathway7.98E-03
120GO:0017004: cytochrome complex assembly7.98E-03
121GO:0006002: fructose 6-phosphate metabolic process7.98E-03
122GO:0071482: cellular response to light stimulus7.98E-03
123GO:0015996: chlorophyll catabolic process7.98E-03
124GO:0006810: transport8.59E-03
125GO:0018298: protein-chromophore linkage9.66E-03
126GO:0005982: starch metabolic process1.02E-02
127GO:0006779: porphyrin-containing compound biosynthetic process1.02E-02
128GO:0007568: aging1.12E-02
129GO:0006782: protoporphyrinogen IX biosynthetic process1.14E-02
130GO:0009637: response to blue light1.23E-02
131GO:0019684: photosynthesis, light reaction1.26E-02
132GO:0009089: lysine biosynthetic process via diaminopimelate1.26E-02
133GO:0009073: aromatic amino acid family biosynthetic process1.26E-02
134GO:1903507: negative regulation of nucleic acid-templated transcription1.26E-02
135GO:0006352: DNA-templated transcription, initiation1.26E-02
136GO:0000272: polysaccharide catabolic process1.26E-02
137GO:0006415: translational termination1.26E-02
138GO:0034599: cellular response to oxidative stress1.28E-02
139GO:0005983: starch catabolic process1.39E-02
140GO:0006790: sulfur compound metabolic process1.39E-02
141GO:0006094: gluconeogenesis1.52E-02
142GO:0005986: sucrose biosynthetic process1.52E-02
143GO:0010114: response to red light1.59E-02
144GO:0009266: response to temperature stimulus1.65E-02
145GO:0019853: L-ascorbic acid biosynthetic process1.79E-02
146GO:0005985: sucrose metabolic process1.79E-02
147GO:0010030: positive regulation of seed germination1.79E-02
148GO:0046854: phosphatidylinositol phosphorylation1.79E-02
149GO:0006636: unsaturated fatty acid biosynthetic process1.94E-02
150GO:0009944: polarity specification of adaxial/abaxial axis2.08E-02
151GO:0016575: histone deacetylation2.24E-02
152GO:0009768: photosynthesis, light harvesting in photosystem I2.24E-02
153GO:0051302: regulation of cell division2.24E-02
154GO:0019953: sexual reproduction2.24E-02
155GO:0048278: vesicle docking2.39E-02
156GO:0048511: rhythmic process2.39E-02
157GO:0043086: negative regulation of catalytic activity2.53E-02
158GO:0006096: glycolytic process2.53E-02
159GO:2000022: regulation of jasmonic acid mediated signaling pathway2.55E-02
160GO:0071369: cellular response to ethylene stimulus2.71E-02
161GO:0001944: vasculature development2.71E-02
162GO:0006012: galactose metabolic process2.71E-02
163GO:0009561: megagametogenesis2.88E-02
164GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.05E-02
165GO:0006396: RNA processing3.14E-02
166GO:0000413: protein peptidyl-prolyl isomerization3.22E-02
167GO:0006520: cellular amino acid metabolic process3.40E-02
168GO:0010182: sugar mediated signaling pathway3.40E-02
169GO:0061025: membrane fusion3.58E-02
170GO:0042752: regulation of circadian rhythm3.58E-02
171GO:0071554: cell wall organization or biogenesis3.95E-02
172GO:0006635: fatty acid beta-oxidation3.95E-02
173GO:0010583: response to cyclopentenone4.14E-02
174GO:0006457: protein folding4.37E-02
175GO:0009790: embryo development4.44E-02
176GO:0009567: double fertilization forming a zygote and endosperm4.53E-02
177GO:0006633: fatty acid biosynthetic process4.78E-02
RankGO TermAdjusted P value
1GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
2GO:0010349: L-galactose dehydrogenase activity0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
5GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
6GO:0043014: alpha-tubulin binding0.00E+00
7GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
8GO:0051721: protein phosphatase 2A binding0.00E+00
9GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
10GO:0004823: leucine-tRNA ligase activity0.00E+00
11GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
12GO:0042903: tubulin deacetylase activity0.00E+00
13GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
14GO:0042623: ATPase activity, coupled0.00E+00
15GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
16GO:0004076: biotin synthase activity0.00E+00
17GO:0043136: glycerol-3-phosphatase activity0.00E+00
18GO:0000121: glycerol-1-phosphatase activity0.00E+00
19GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
20GO:0019843: rRNA binding1.43E-08
21GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.98E-07
22GO:0005528: FK506 binding8.96E-06
23GO:0004045: aminoacyl-tRNA hydrolase activity9.11E-05
24GO:0016279: protein-lysine N-methyltransferase activity9.11E-05
25GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.11E-05
26GO:0046920: alpha-(1->3)-fucosyltransferase activity3.89E-04
27GO:0050308: sugar-phosphatase activity3.89E-04
28GO:0019203: carbohydrate phosphatase activity3.89E-04
29GO:0015088: copper uptake transmembrane transporter activity3.89E-04
30GO:0004832: valine-tRNA ligase activity3.89E-04
31GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.89E-04
32GO:0042586: peptide deformylase activity3.89E-04
33GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.89E-04
34GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.89E-04
35GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.89E-04
36GO:0004033: aldo-keto reductase (NADP) activity4.44E-04
37GO:0003844: 1,4-alpha-glucan branching enzyme activity8.44E-04
38GO:0016630: protochlorophyllide reductase activity8.44E-04
39GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.44E-04
40GO:0004614: phosphoglucomutase activity8.44E-04
41GO:0019156: isoamylase activity8.44E-04
42GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.44E-04
43GO:0008934: inositol monophosphate 1-phosphatase activity8.44E-04
44GO:0052833: inositol monophosphate 4-phosphatase activity8.44E-04
45GO:0030385: ferredoxin:thioredoxin reductase activity8.44E-04
46GO:0004826: phenylalanine-tRNA ligase activity8.44E-04
47GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.44E-04
48GO:0047746: chlorophyllase activity8.44E-04
49GO:0042389: omega-3 fatty acid desaturase activity8.44E-04
50GO:0016868: intramolecular transferase activity, phosphotransferases8.44E-04
51GO:0010297: heteropolysaccharide binding8.44E-04
52GO:0009977: proton motive force dependent protein transmembrane transporter activity8.44E-04
53GO:0004047: aminomethyltransferase activity8.44E-04
54GO:0052832: inositol monophosphate 3-phosphatase activity8.44E-04
55GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.44E-04
56GO:0003735: structural constituent of ribosome8.49E-04
57GO:0008047: enzyme activator activity8.94E-04
58GO:0004565: beta-galactosidase activity1.33E-03
59GO:0031072: heat shock protein binding1.33E-03
60GO:0005504: fatty acid binding1.37E-03
61GO:0043169: cation binding1.37E-03
62GO:0003913: DNA photolyase activity1.37E-03
63GO:0002161: aminoacyl-tRNA editing activity1.37E-03
64GO:0004751: ribose-5-phosphate isomerase activity1.37E-03
65GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.37E-03
66GO:0004375: glycine dehydrogenase (decarboxylating) activity1.97E-03
67GO:0048487: beta-tubulin binding1.97E-03
68GO:0016149: translation release factor activity, codon specific1.97E-03
69GO:0016851: magnesium chelatase activity1.97E-03
70GO:0043023: ribosomal large subunit binding1.97E-03
71GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.97E-03
72GO:0004857: enzyme inhibitor activity2.08E-03
73GO:0080032: methyl jasmonate esterase activity2.65E-03
74GO:0016987: sigma factor activity2.65E-03
75GO:0045430: chalcone isomerase activity2.65E-03
76GO:0019199: transmembrane receptor protein kinase activity2.65E-03
77GO:0042277: peptide binding2.65E-03
78GO:0004659: prenyltransferase activity2.65E-03
79GO:0001053: plastid sigma factor activity2.65E-03
80GO:0005198: structural molecule activity3.05E-03
81GO:0003959: NADPH dehydrogenase activity3.40E-03
82GO:0047134: protein-disulfide reductase activity3.54E-03
83GO:0004812: aminoacyl-tRNA ligase activity3.54E-03
84GO:0004556: alpha-amylase activity4.20E-03
85GO:2001070: starch binding4.20E-03
86GO:0080030: methyl indole-3-acetate esterase activity4.20E-03
87GO:0004791: thioredoxin-disulfide reductase activity4.44E-03
88GO:0008168: methyltransferase activity4.82E-03
89GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.06E-03
90GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.06E-03
91GO:0051920: peroxiredoxin activity5.06E-03
92GO:0048038: quinone binding5.10E-03
93GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.81E-03
94GO:0009881: photoreceptor activity5.98E-03
95GO:0051082: unfolded protein binding6.04E-03
96GO:0015035: protein disulfide oxidoreductase activity6.27E-03
97GO:0008483: transaminase activity6.57E-03
98GO:0043022: ribosome binding6.95E-03
99GO:0016209: antioxidant activity6.95E-03
100GO:0003723: RNA binding7.44E-03
101GO:0016168: chlorophyll binding7.81E-03
102GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.98E-03
103GO:0008173: RNA methyltransferase activity7.98E-03
104GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.98E-03
105GO:0008138: protein tyrosine/serine/threonine phosphatase activity9.05E-03
106GO:0003747: translation release factor activity9.05E-03
107GO:0008417: fucosyltransferase activity9.05E-03
108GO:0005381: iron ion transmembrane transporter activity1.02E-02
109GO:0003924: GTPase activity1.28E-02
110GO:0003993: acid phosphatase activity1.28E-02
111GO:0000049: tRNA binding1.39E-02
112GO:0004521: endoribonuclease activity1.39E-02
113GO:0009055: electron carrier activity1.42E-02
114GO:0043621: protein self-association1.72E-02
115GO:0051537: 2 iron, 2 sulfur cluster binding1.72E-02
116GO:0031409: pigment binding1.94E-02
117GO:0000287: magnesium ion binding2.06E-02
118GO:0003714: transcription corepressor activity2.08E-02
119GO:0004407: histone deacetylase activity2.08E-02
120GO:0005525: GTP binding2.21E-02
121GO:0043424: protein histidine kinase binding2.24E-02
122GO:0030570: pectate lyase activity2.71E-02
123GO:0022891: substrate-specific transmembrane transporter activity2.71E-02
124GO:0005509: calcium ion binding2.73E-02
125GO:0003756: protein disulfide isomerase activity2.88E-02
126GO:0008026: ATP-dependent helicase activity3.23E-02
127GO:0050662: coenzyme binding3.58E-02
128GO:0004252: serine-type endopeptidase activity4.23E-02
129GO:0016787: hydrolase activity4.62E-02
130GO:0016491: oxidoreductase activity4.90E-02
131GO:0016413: O-acetyltransferase activity4.92E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
4GO:0009349: riboflavin synthase complex0.00E+00
5GO:0043235: receptor complex0.00E+00
6GO:0009507: chloroplast5.79E-86
7GO:0009570: chloroplast stroma1.15E-44
8GO:0009535: chloroplast thylakoid membrane4.12E-39
9GO:0009534: chloroplast thylakoid1.22E-34
10GO:0009941: chloroplast envelope7.50E-28
11GO:0009579: thylakoid1.31E-19
12GO:0009543: chloroplast thylakoid lumen4.71E-17
13GO:0031977: thylakoid lumen4.90E-12
14GO:0030095: chloroplast photosystem II8.63E-08
15GO:0005840: ribosome1.00E-07
16GO:0010319: stromule2.15E-07
17GO:0009654: photosystem II oxygen evolving complex3.05E-07
18GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.40E-07
19GO:0019898: extrinsic component of membrane2.40E-06
20GO:0000427: plastid-encoded plastid RNA polymerase complex6.76E-06
21GO:0009538: photosystem I reaction center1.51E-05
22GO:0010287: plastoglobule3.56E-05
23GO:0042651: thylakoid membrane2.19E-04
24GO:0009532: plastid stroma2.49E-04
25GO:0031361: integral component of thylakoid membrane3.89E-04
26GO:0048046: apoplast7.11E-04
27GO:0009706: chloroplast inner membrane1.14E-03
28GO:0009508: plastid chromosome1.33E-03
29GO:0009528: plastid inner membrane1.37E-03
30GO:0033281: TAT protein transport complex1.37E-03
31GO:0010007: magnesium chelatase complex1.37E-03
32GO:0031969: chloroplast membrane1.73E-03
33GO:0005960: glycine cleavage complex1.97E-03
34GO:0042646: plastid nucleoid1.97E-03
35GO:0031897: Tic complex2.65E-03
36GO:0009527: plastid outer membrane2.65E-03
37GO:0009523: photosystem II4.76E-03
38GO:0009840: chloroplastic endopeptidase Clp complex5.06E-03
39GO:0016272: prefoldin complex5.06E-03
40GO:0009533: chloroplast stromal thylakoid5.98E-03
41GO:0009295: nucleoid6.57E-03
42GO:0009501: amyloplast6.95E-03
43GO:0030529: intracellular ribonucleoprotein complex7.39E-03
44GO:0042644: chloroplast nucleoid9.05E-03
45GO:0005763: mitochondrial small ribosomal subunit9.05E-03
46GO:0009707: chloroplast outer membrane9.66E-03
47GO:0015934: large ribosomal subunit1.12E-02
48GO:0055028: cortical microtubule1.14E-02
49GO:0012511: monolayer-surrounded lipid storage body1.26E-02
50GO:0032040: small-subunit processome1.39E-02
51GO:0030076: light-harvesting complex1.79E-02
52GO:0016020: membrane1.94E-02
53GO:0031225: anchored component of membrane2.02E-02
54GO:0015935: small ribosomal subunit2.39E-02
55GO:0005874: microtubule2.65E-02
56GO:0009522: photosystem I3.58E-02
57GO:0009504: cell plate3.76E-02
58GO:0032580: Golgi cisterna membrane4.53E-02
59GO:0005778: peroxisomal membrane4.72E-02
60GO:0005759: mitochondrial matrix4.78E-02
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Gene type



Gene DE type